Wall clock time and date at job start Mon Mar 30 2020 02:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 108.86893 * 2 1 4 4 C 1.50805 * 108.95496 * 118.71125 * 2 1 3 5 5 N 1.47903 * 108.49228 * 213.22949 * 4 2 1 6 6 C 1.40015 * 114.07567 * 280.05761 * 5 4 2 7 7 C 1.54206 * 112.00502 * 61.84519 * 6 5 4 8 8 N 1.44643 * 108.83154 * 281.08098 * 7 6 5 9 9 C 1.46896 * 111.04664 * 220.42978 * 8 7 6 10 10 C 1.53003 * 109.47138 * 62.37131 * 9 8 7 11 11 C 1.50706 * 109.46843 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00340 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99406 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00306 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99655 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46868 * 0.02562 * 15 13 11 17 17 H 1.48493 * 109.46856 * 120.00280 * 15 13 11 18 18 H 1.48505 * 109.47228 * 240.00441 * 15 13 11 19 19 C 1.48065 * 113.78376 * 94.32632 * 8 7 6 20 20 H 1.09006 * 109.46773 * 301.29072 * 1 2 3 21 21 H 1.08995 * 109.47216 * 61.28769 * 1 2 3 22 22 H 1.09003 * 109.47295 * 181.29411 * 1 2 3 23 23 H 1.09002 * 109.63246 * 93.53119 * 4 2 1 24 24 H 1.08995 * 109.80197 * 333.02986 * 4 2 1 25 25 H 1.00904 * 111.00209 * 46.34972 * 5 4 2 26 26 H 1.09002 * 108.96312 * 182.47264 * 6 5 4 27 27 H 1.08999 * 108.95955 * 301.22570 * 6 5 4 28 28 H 1.08998 * 109.57252 * 40.97394 * 7 6 5 29 29 H 1.08997 * 109.57121 * 161.34679 * 7 6 5 30 30 H 1.09001 * 109.47126 * 182.37030 * 9 8 7 31 31 H 1.09004 * 109.46913 * 302.36941 * 9 8 7 32 32 H 1.09001 * 109.47029 * 299.99958 * 10 9 8 33 33 H 1.08996 * 109.47099 * 59.99960 * 10 9 8 34 34 H 0.97006 * 120.00024 * 179.97438 * 14 13 11 35 35 H 1.09000 * 108.88896 * 197.54722 * 19 8 7 36 36 H 1.09004 * 108.80145 * 79.03045 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8825 1.0313 0.0000 4 6 2.0199 -0.6852 1.2509 5 7 3.2819 -0.0411 1.6750 6 6 4.4089 -0.4687 0.9627 7 6 4.3011 -0.1409 -0.5403 8 7 3.4446 -1.1207 -1.1716 9 6 3.9732 -1.5161 -2.4839 10 6 5.3416 -2.1766 -2.3045 11 6 5.8842 -2.5816 -3.6510 12 1 5.3103 -2.3877 -4.5450 13 6 7.1133 -3.1997 -3.7412 14 7 7.8120 -3.4362 -2.6525 15 14 7.7856 -3.7024 -5.4101 16 1 6.8136 -3.3279 -6.4685 17 1 9.0749 -3.0073 -5.6541 18 1 8.0028 -5.1713 -5.4342 19 6 2.0293 -0.6983 -1.2750 20 1 -0.3633 0.5338 0.8782 21 1 -0.3633 0.4937 -0.9013 22 1 -0.3634 -1.0274 0.0232 23 1 2.1987 -1.7404 1.0444 24 1 1.2754 -0.5876 2.0410 25 1 3.2001 0.9644 1.6527 26 1 5.2927 0.0225 1.3698 27 1 4.5161 -1.5467 1.0832 28 1 3.8753 0.8544 -0.6673 29 1 5.2916 -0.1768 -0.9938 30 1 3.2881 -2.2215 -2.9540 31 1 4.0757 -0.6334 -3.1152 32 1 6.0268 -1.4711 -1.8344 33 1 5.2391 -3.0591 -1.6732 34 1 8.6766 -3.8714 -2.7160 35 1 1.4115 -1.5769 -1.4609 36 1 1.9280 -0.0120 -2.1157 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307151874.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:10 Heat of formation + Delta-G solvation = -25.417333 kcal Electronic energy + Delta-G solvation = -14730.666247 eV Core-core repulsion = 12441.251143 eV Total energy + Delta-G solvation = -2289.415104 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.56105 -36.94697 -35.13652 -34.81470 -31.55661 -29.10665 -27.18132 -26.51686 -24.82855 -22.79986 -21.84057 -20.42462 -18.65771 -17.47361 -16.75692 -16.58571 -16.17909 -15.87321 -15.25973 -14.67227 -14.29407 -14.07600 -13.73653 -13.59791 -13.24448 -13.02711 -12.88078 -12.55796 -12.42693 -12.17288 -12.07109 -12.02428 -11.63198 -11.56105 -11.28615 -11.14894 -10.55843 -9.38822 -8.93183 -8.21919 -6.33559 1.38730 1.39228 1.52461 2.38448 2.98569 3.11305 3.46829 3.79018 3.94237 4.07240 4.22930 4.30489 4.41263 4.52210 4.58437 4.62819 4.72882 4.75121 4.89933 4.90834 5.03609 5.04449 5.10555 5.23964 5.30764 5.41247 5.43909 5.66403 5.76079 6.11103 6.23660 6.32567 6.48408 6.67646 6.83350 7.35641 8.90329 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.053429 B = 0.006669 C = 0.006124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.932589 B = 4197.731139 C = 4571.261182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.116 4.116 3 H 0.066 0.934 4 C 0.077 3.923 5 N -0.692 5.692 6 C 0.088 3.912 7 C 0.021 3.979 8 N -0.559 5.559 9 C 0.084 3.916 10 C 0.038 3.962 11 C -0.547 4.547 12 H 0.058 0.942 13 C 0.003 3.997 14 N -0.930 5.930 15 Si 0.967 3.033 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.277 1.277 19 C 0.064 3.936 20 H 0.074 0.926 21 H 0.056 0.944 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.093 0.907 25 H 0.347 0.653 26 H 0.077 0.923 27 H 0.051 0.949 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.014 0.986 32 H -0.002 1.002 33 H -0.009 1.009 34 H 0.264 0.736 35 H 0.070 0.930 36 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.634 8.221 5.726 16.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.136 4.136 3 H 0.084 0.916 4 C -0.052 4.052 5 N -0.321 5.321 6 C -0.045 4.045 7 C -0.110 4.110 8 N -0.284 5.284 9 C -0.043 4.043 10 C 0.001 3.999 11 C -0.585 4.585 12 H 0.076 0.924 13 C -0.195 4.195 14 N -0.570 5.570 15 Si 0.791 3.209 16 H -0.187 1.187 17 H -0.202 1.202 18 H -0.202 1.202 19 C -0.063 4.063 20 H 0.093 0.907 21 H 0.075 0.925 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.111 0.889 25 H 0.167 0.833 26 H 0.095 0.905 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.032 0.968 32 H 0.017 0.983 33 H 0.009 0.991 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -12.372 7.312 6.565 15.800 hybrid contribution 0.686 0.626 -2.282 2.464 sum -11.686 7.938 4.283 14.762 Atomic orbital electron populations 1.21774 0.92430 1.02585 1.02624 1.21697 0.98031 0.99073 0.94834 0.91572 1.21819 0.90413 0.98360 0.94571 1.58092 1.03508 1.12026 1.58512 1.20799 0.93676 1.00723 0.89292 1.22865 0.96845 0.92956 0.98288 1.60857 1.02325 1.42638 1.22579 1.21923 0.96929 0.97215 0.88240 1.18959 0.91271 0.94335 0.95382 1.21640 1.03728 1.39140 0.93993 0.92425 1.25953 0.97201 0.95617 1.00760 1.70113 1.13630 1.43332 1.29924 0.85378 0.78281 0.78019 0.79220 1.18700 1.20221 1.20236 1.22533 0.87959 0.98730 0.97100 0.90663 0.92507 0.92126 0.92310 0.88877 0.83267 0.90467 0.93071 0.93921 0.92817 0.92305 0.96789 0.98340 0.99081 0.92692 0.91162 0.95754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.81 71.98 0.63 -1.61 16 2 C -0.12 -2.57 2.23 -11.27 -0.03 -2.60 16 3 H 0.07 1.43 6.79 -2.39 -0.02 1.42 16 4 C 0.08 1.82 5.78 85.40 0.49 2.32 16 5 N -0.69 -17.59 6.46 -528.26 -3.41 -21.00 16 6 C 0.09 2.75 6.12 87.95 0.54 3.29 16 7 C 0.02 0.74 5.15 87.13 0.45 1.19 16 8 N -0.56 -20.79 3.97 -895.02 -3.56 -24.35 16 9 C 0.08 3.73 4.80 86.30 0.41 4.14 16 10 C 0.04 2.07 4.88 29.85 0.15 2.22 16 11 C -0.55 -31.89 9.11 25.60 0.23 -31.65 16 12 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 13 C 0.00 0.17 5.46 84.66 0.46 0.63 16 14 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 15 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 16 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 19 C 0.06 1.86 4.82 86.31 0.42 2.28 16 20 H 0.07 1.00 8.09 -2.38 -0.02 0.98 16 21 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.06 1.71 7.57 -2.39 -0.02 1.69 16 24 H 0.09 1.79 7.72 -2.39 -0.02 1.77 16 25 H 0.35 7.37 8.21 -89.69 -0.74 6.63 16 26 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.05 1.90 8.06 -2.39 -0.02 1.88 16 28 H 0.04 1.32 6.93 -2.39 -0.02 1.31 16 29 H 0.05 2.22 5.60 -2.39 -0.01 2.20 16 30 H 0.06 2.56 8.08 -2.39 -0.02 2.54 16 31 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.00 -0.09 6.17 -2.39 -0.01 -0.11 16 33 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 34 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 35 H 0.07 2.03 7.97 -2.39 -0.02 2.01 16 36 H 0.02 0.71 8.03 -2.38 -0.02 0.69 16 Total: -1.00 -64.51 277.73 -0.59 -65.11 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.30 Total: 10.38 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: 3.76 Total: -19.80 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -6.68 Total: -102.51 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -64.51 -0.59 -65.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307151874.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.689 kcal (2) G-P(sol) polarization free energy of solvation -64.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds