Wall clock time and date at job start Mon Mar 30 2020 02:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 108.93639 * 2 1 4 4 C 1.53698 * 108.88709 * 241.29429 * 2 1 3 5 5 N 1.48065 * 112.47263 * 197.92539 * 4 2 1 6 6 C 1.44573 * 113.85556 * 318.31683 * 5 4 2 7 7 C 1.54203 * 108.84811 * 94.22936 * 6 5 4 8 8 N 1.40016 * 112.08295 * 281.17997 * 7 6 5 9 9 C 1.46897 * 111.00077 * 188.09596 * 8 7 6 10 10 C 1.53010 * 109.47068 * 66.04714 * 9 8 7 11 11 C 1.50703 * 109.47018 * 180.02562 * 10 9 8 12 12 H 1.08006 * 119.99867 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99978 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99733 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00042 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47230 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47170 * 119.99775 * 15 13 11 18 18 H 1.48500 * 109.47507 * 239.99583 * 15 13 11 19 19 C 1.47906 * 114.06770 * 61.80747 * 8 7 6 20 20 H 1.08996 * 109.47075 * 301.25443 * 1 2 3 21 21 H 1.09001 * 109.47220 * 61.25373 * 1 2 3 22 22 H 1.08996 * 109.46596 * 181.25142 * 1 2 3 23 23 H 1.09009 * 108.88434 * 77.15202 * 4 2 1 24 24 H 1.09008 * 108.88010 * 318.69793 * 4 2 1 25 25 H 1.00901 * 111.00120 * 192.19890 * 5 4 2 26 26 H 1.08996 * 109.57526 * 214.03399 * 6 5 4 27 27 H 1.08999 * 109.57883 * 334.41824 * 6 5 4 28 28 H 1.08996 * 108.95966 * 41.84924 * 7 6 5 29 29 H 1.09005 * 108.96139 * 160.59743 * 7 6 5 30 30 H 1.08997 * 109.47267 * 186.04214 * 9 8 7 31 31 H 1.08998 * 109.47625 * 306.04298 * 9 8 7 32 32 H 1.08997 * 109.46669 * 299.99866 * 10 9 8 33 33 H 1.09000 * 109.47310 * 59.99890 * 10 9 8 34 34 H 0.97005 * 120.00216 * 179.97438 * 14 13 11 35 35 H 1.08999 * 109.62793 * 39.77933 * 19 8 7 36 36 H 1.08999 * 109.63472 * 160.17491 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8838 1.0311 0.0000 4 6 2.0275 -0.6985 -1.2755 5 7 3.4425 -1.1226 -1.1733 6 6 4.3017 -0.1456 -0.5429 7 6 4.4089 -0.4726 0.9602 8 7 3.2832 -0.0437 1.6738 9 6 3.4895 -0.1912 3.1208 10 6 4.5954 0.7623 3.5780 11 6 4.8075 0.6105 5.0623 12 1 4.2126 -0.0951 5.6235 13 6 5.7601 1.3732 5.7041 14 7 6.4839 2.2327 5.0209 15 14 6.0224 1.1856 7.5440 16 1 5.0889 0.1601 8.0752 17 1 7.4219 0.7623 7.8039 18 1 5.7655 2.4849 8.2157 19 6 2.0199 -0.6859 1.2504 20 1 -0.3633 0.5332 0.8785 21 1 -0.3634 0.4942 -0.9010 22 1 -0.3632 -1.0274 0.0224 23 1 1.9248 -0.0125 -2.1164 24 1 1.4086 -1.5764 -1.4612 25 1 3.8046 -1.3943 -2.0751 26 1 5.2921 -0.1837 -0.9964 27 1 3.8775 0.8503 -0.6706 28 1 4.5155 -1.5506 1.0814 29 1 5.2929 0.0183 1.3673 30 1 2.5645 0.0470 3.6458 31 1 3.7798 -1.2179 3.3437 32 1 5.5204 0.5241 3.0530 33 1 4.3051 1.7890 3.3552 34 1 7.1539 2.7695 5.4724 35 1 2.1970 -1.7413 1.0436 36 1 1.2760 -0.5874 2.0410 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307151876.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:12 Heat of formation + Delta-G solvation = -24.113535 kcal Electronic energy + Delta-G solvation = -14656.999681 eV Core-core repulsion = 12367.641114 eV Total energy + Delta-G solvation = -2289.358567 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.43958 -36.92996 -34.98865 -34.76585 -31.71300 -29.21553 -27.24480 -26.40078 -25.00464 -22.77638 -21.35750 -20.32658 -18.64909 -17.49132 -16.72711 -16.48729 -16.24537 -15.80908 -15.65592 -14.60311 -14.28179 -14.10741 -13.69003 -13.54789 -13.33365 -12.98450 -12.85125 -12.47865 -12.29212 -12.12417 -12.06583 -11.87995 -11.67824 -11.39181 -11.23902 -11.10050 -10.53734 -9.25448 -9.02686 -8.20296 -6.31654 1.40071 1.40634 1.54161 2.40418 3.09949 3.13107 3.30822 3.86644 4.02895 4.15047 4.28739 4.39318 4.43500 4.52089 4.62005 4.69341 4.75737 4.84118 4.87271 4.93454 4.99383 5.10164 5.11487 5.24875 5.33969 5.42553 5.50583 5.68781 5.79712 6.13599 6.18013 6.39895 6.59173 6.68448 6.85849 7.37376 8.92208 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052173 B = 0.006465 C = 0.006037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.549910 B = 4330.287918 C = 4636.878085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 H 0.058 0.942 4 C 0.074 3.926 5 N -0.711 5.711 6 C 0.078 3.922 7 C 0.076 3.924 8 N -0.562 5.562 9 C 0.084 3.916 10 C 0.037 3.963 11 C -0.545 4.545 12 H 0.059 0.941 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.968 3.032 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.276 1.276 19 C 0.077 3.923 20 H 0.053 0.947 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.040 0.960 24 H 0.082 0.918 25 H 0.356 0.644 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.011 0.989 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.014 0.986 32 H -0.006 1.006 33 H -0.008 1.008 34 H 0.264 0.736 35 H 0.038 0.962 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.426 -5.931 -12.375 16.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.112 4.112 3 H 0.077 0.923 4 C -0.055 4.055 5 N -0.344 5.344 6 C -0.052 4.052 7 C -0.055 4.055 8 N -0.286 5.286 9 C -0.043 4.043 10 C -0.001 4.001 11 C -0.583 4.583 12 H 0.077 0.923 13 C -0.197 4.197 14 N -0.572 5.572 15 Si 0.792 3.208 16 H -0.186 1.186 17 H -0.203 1.203 18 H -0.202 1.202 19 C -0.050 4.050 20 H 0.073 0.927 21 H 0.087 0.913 22 H 0.084 0.916 23 H 0.059 0.941 24 H 0.101 0.899 25 H 0.176 0.824 26 H 0.101 0.899 27 H 0.059 0.941 28 H 0.029 0.971 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.032 0.968 32 H 0.012 0.988 33 H 0.010 0.990 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.449 -5.665 -11.912 16.225 hybrid contribution 0.775 0.044 0.511 0.930 sum -8.673 -5.621 -11.400 15.388 Atomic orbital electron populations 1.21770 0.92716 1.02530 1.02365 1.21016 0.96957 0.99493 0.93704 0.92314 1.22300 0.88263 0.99105 0.95793 1.58954 1.02621 1.44131 1.28743 1.21587 0.96944 0.93825 0.92844 1.21011 0.92906 0.96671 0.94901 1.59248 1.03922 1.61152 1.04297 1.21949 0.99077 0.96852 0.86380 1.18948 0.92767 0.93843 0.94500 1.21660 1.19715 1.22169 0.94767 0.92297 1.25974 0.95395 0.94649 1.03665 1.70119 1.23780 1.25376 1.37944 0.85359 0.78164 0.78292 0.78968 1.18616 1.20278 1.20204 1.21845 0.90086 0.96088 0.96976 0.92744 0.91272 0.91607 0.94122 0.89937 0.82363 0.89851 0.94147 0.97078 0.93127 0.91944 0.96812 0.98755 0.98988 0.92729 0.94319 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.81 71.98 0.63 -1.97 16 2 C -0.09 -2.33 2.25 -11.27 -0.03 -2.35 16 3 H 0.06 1.75 7.23 -2.38 -0.02 1.73 16 4 C 0.07 1.56 5.86 86.31 0.51 2.07 16 5 N -0.71 -16.93 6.12 -512.97 -3.14 -20.07 16 6 C 0.08 2.25 6.19 87.15 0.54 2.79 16 7 C 0.08 2.83 4.92 87.95 0.43 3.26 16 8 N -0.56 -21.90 4.08 -912.45 -3.73 -25.62 16 9 C 0.08 3.83 4.90 86.31 0.42 4.25 16 10 C 0.04 2.05 4.87 29.85 0.15 2.20 16 11 C -0.54 -32.10 9.11 25.60 0.23 -31.87 16 12 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 13 C 0.00 0.06 5.46 84.65 0.46 0.52 16 14 N -0.93 -58.02 13.29 21.45 0.28 -57.74 16 15 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 16 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 19 C 0.08 2.40 4.85 85.39 0.41 2.81 16 20 H 0.05 1.10 8.09 -2.39 -0.02 1.08 16 21 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 24 H 0.08 1.53 7.97 -2.38 -0.02 1.51 16 25 H 0.36 6.53 8.89 -89.69 -0.80 5.74 16 26 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.04 1.23 6.93 -2.39 -0.02 1.21 16 28 H 0.01 0.43 8.07 -2.39 -0.02 0.41 16 29 H 0.05 2.19 5.92 -2.38 -0.01 2.17 16 30 H 0.06 2.74 7.70 -2.39 -0.02 2.73 16 31 H 0.01 0.63 8.11 -2.39 -0.02 0.61 16 32 H -0.01 -0.35 6.36 -2.39 -0.02 -0.36 16 33 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 34 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 35 H 0.04 1.23 7.57 -2.39 -0.02 1.21 16 36 H 0.07 2.07 7.16 -2.39 -0.02 2.05 16 Total: -1.00 -66.21 278.32 -0.55 -66.76 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 0.24 Total: 7.81 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 3.76 Total: -18.29 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -6.58 Total: -103.43 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -66.21 -0.55 -66.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307151876.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.651 kcal (2) G-P(sol) polarization free energy of solvation -66.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds