Wall clock time and date at job start Mon Mar 30 2020 02:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47131 * 2 1 4 4 C 1.50696 * 109.47116 * 239.99897 * 2 1 3 5 5 H 1.08003 * 120.00078 * 245.56164 * 4 2 1 6 6 C 1.37875 * 120.00592 * 65.56289 * 4 2 1 7 7 N 1.31506 * 120.00636 * 198.63986 * 6 4 2 8 8 Si 1.86806 * 119.99539 * 18.64096 * 6 4 2 9 9 H 1.48493 * 109.46943 * 180.02562 * 8 6 4 10 10 H 1.48501 * 109.47271 * 300.00202 * 8 6 4 11 11 H 1.48500 * 109.46983 * 59.99781 * 8 6 4 12 12 N 1.46898 * 109.47029 * 119.99509 * 2 1 3 13 13 C 1.46858 * 110.99833 * 59.21480 * 12 2 1 14 14 C 1.53036 * 109.52201 * 174.16055 * 13 12 2 15 15 C 1.53114 * 109.27923 * 59.17392 * 14 13 12 16 16 C 1.53120 * 109.16352 * 302.34489 * 15 14 13 17 17 H 1.08996 * 109.53755 * 297.69249 * 16 15 14 18 18 N 1.46903 * 109.50186 * 177.59299 * 16 15 14 19 19 C 1.46846 * 111.00462 * 295.00328 * 12 2 1 20 20 H 1.08994 * 109.46104 * 65.81762 * 19 12 2 21 21 C 1.53004 * 109.45889 * 305.84572 * 19 12 2 22 22 H 1.09003 * 109.46856 * 175.04492 * 1 2 3 23 23 H 1.08998 * 109.47315 * 295.04558 * 1 2 3 24 24 H 1.09001 * 109.46632 * 55.04620 * 1 2 3 25 25 H 0.97002 * 120.00281 * 354.96487 * 7 6 4 26 26 H 1.09001 * 109.45698 * 294.17322 * 13 12 2 27 27 H 1.08995 * 109.46061 * 54.14199 * 13 12 2 28 28 H 1.09007 * 109.50412 * 299.23722 * 14 13 12 29 29 H 1.08995 * 109.50056 * 179.12152 * 14 13 12 30 30 H 1.09004 * 109.52296 * 182.43709 * 15 14 13 31 31 H 1.09000 * 109.57819 * 62.28596 * 15 14 13 32 32 H 1.00905 * 110.99872 * 60.20186 * 18 16 15 33 33 H 1.00904 * 110.99869 * 184.14931 * 18 16 15 34 34 H 1.09002 * 109.47380 * 59.99331 * 21 19 12 35 35 H 1.08995 * 109.47030 * 180.02562 * 21 19 12 36 36 H 1.09002 * 109.46636 * 299.99564 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5772 -1.6379 -1.1339 6 6 1.7965 -0.1764 -2.4795 7 7 1.8935 -0.9361 -3.5485 8 14 1.3391 1.6264 -2.6532 9 1 1.1386 1.9501 -4.0885 10 1 0.0836 1.8928 -1.9062 11 1 2.4308 2.4693 -2.1029 12 7 2.0197 -0.6924 1.1995 13 6 1.5335 -2.0775 1.2429 14 6 2.1777 -2.8088 2.4228 15 6 1.8222 -2.0823 3.7229 16 6 2.2965 -0.6292 3.6325 17 1 3.3810 -0.6057 3.5257 18 7 1.9082 0.0903 4.8530 19 6 1.6488 0.0390 2.4177 20 1 0.5649 0.0281 2.5319 21 6 2.1357 1.4856 2.3118 22 1 -0.3633 -1.0239 -0.0888 23 1 -0.3634 0.4350 0.9310 24 1 -0.3633 0.5888 -0.8423 25 1 2.2016 -1.8522 -3.4662 26 1 0.4501 -2.0784 1.3628 27 1 1.7965 -2.5839 0.3143 28 1 3.2603 -2.8202 2.2967 29 1 1.8047 -3.8322 2.4640 30 1 2.3145 -2.5747 4.5616 31 1 0.7425 -2.1045 3.8703 32 1 2.3237 -0.3324 5.6696 33 1 2.1502 1.0678 4.7890 34 1 1.6740 1.9621 1.4470 35 1 1.8610 2.0285 3.2161 36 1 3.2197 1.4966 2.1971 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307152496.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:23 Heat of formation + Delta-G solvation = -1.215702 kcal Electronic energy + Delta-G solvation = -15388.891159 eV Core-core repulsion = 13100.525516 eV Total energy + Delta-G solvation = -2288.365642 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.17865 -35.21023 -33.01960 -32.33261 -29.98416 -28.12547 -26.14383 -24.84283 -23.05315 -21.05182 -19.87500 -18.52427 -17.25454 -15.80541 -15.40954 -14.67912 -14.30941 -14.02624 -13.55612 -13.35772 -12.98684 -12.29161 -11.96151 -11.88728 -11.72818 -11.46207 -11.42991 -11.19590 -10.82854 -10.49257 -10.30738 -10.05209 -10.00715 -9.68695 -9.39330 -8.88760 -8.55749 -8.08914 -7.23670 -6.41907 -3.98735 3.38638 3.44309 3.61096 4.47640 4.51439 4.94122 5.10271 5.17934 5.31400 5.46577 5.59510 5.78905 5.84041 5.95896 6.02126 6.14410 6.23639 6.24454 6.35320 6.42502 6.46155 6.49441 6.61730 6.68286 6.77572 6.82933 7.04603 7.24567 7.37528 7.51805 7.82758 8.14619 8.39401 8.50823 9.02283 9.67570 10.98984 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041315 B = 0.010544 C = 0.009059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.563739 B = 2654.863719 C = 3089.937095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.186 3.814 3 H 0.037 0.963 4 C -0.586 4.586 5 H 0.063 0.937 6 C 0.030 3.970 7 N -0.908 5.908 8 Si 1.042 2.958 9 H -0.286 1.286 10 H -0.275 1.275 11 H -0.283 1.283 12 N -0.518 5.518 13 C 0.063 3.937 14 C -0.117 4.117 15 C -0.109 4.109 16 C 0.099 3.901 17 H 0.040 0.960 18 N -0.849 5.849 19 C 0.083 3.917 20 H 0.041 0.959 21 C -0.149 4.149 22 H 0.047 0.953 23 H 0.023 0.977 24 H 0.056 0.944 25 H 0.267 0.733 26 H 0.023 0.977 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.335 0.665 33 H 0.339 0.661 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.157 1.560 13.614 13.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.078 3.922 3 H 0.055 0.945 4 C -0.624 4.624 5 H 0.081 0.919 6 C -0.175 4.175 7 N -0.543 5.543 8 Si 0.871 3.129 9 H -0.212 1.212 10 H -0.202 1.202 11 H -0.209 1.209 12 N -0.243 5.243 13 C -0.065 4.065 14 C -0.156 4.156 15 C -0.147 4.147 16 C -0.013 4.013 17 H 0.058 0.942 18 N -0.380 5.380 19 C -0.026 4.026 20 H 0.059 0.941 21 C -0.207 4.207 22 H 0.066 0.934 23 H 0.042 0.958 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.041 0.959 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.147 0.853 33 H 0.153 0.847 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.822 2.490 12.273 12.550 hybrid contribution 0.572 -0.980 1.280 1.711 sum -0.251 1.510 13.553 13.639 Atomic orbital electron populations 1.22867 1.01560 1.01007 0.99165 1.19657 0.89035 0.95072 0.88430 0.94547 1.21963 1.39781 1.10206 0.90434 0.91879 1.25647 0.94774 1.04944 0.92159 1.70864 1.42469 1.09318 1.31656 0.84095 0.76983 0.75827 0.75973 1.21213 1.20223 1.20942 1.62130 1.59552 1.01381 1.01194 1.21959 0.95984 0.90228 0.98324 1.21623 1.01439 0.98037 0.94493 1.21566 1.01231 0.94517 0.97425 1.21338 0.97164 0.93382 0.89370 0.94185 1.58762 1.67985 1.06874 1.04401 1.21489 0.97365 0.93339 0.90407 0.94100 1.21940 1.01808 0.95772 1.01150 0.93400 0.95783 0.92558 0.92325 0.95867 0.89634 0.91653 0.92195 0.92927 0.91871 0.85272 0.84691 0.91873 0.93014 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.23 8.14 37.16 0.30 -3.92 16 2 C 0.19 4.42 1.54 -68.87 -0.11 4.32 16 3 H 0.04 0.89 4.56 -51.93 -0.24 0.65 16 4 C -0.59 -16.31 8.24 -34.44 -0.28 -16.59 16 5 H 0.06 1.90 6.79 -52.48 -0.36 1.54 16 6 C 0.03 0.85 5.33 -17.82 -0.10 0.75 16 7 N -0.91 -27.85 13.69 55.43 0.76 -27.09 16 8 Si 1.04 25.24 26.45 -169.99 -4.50 20.74 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.28 -6.19 5.54 56.52 0.31 -5.88 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 12 N -0.52 -10.93 4.47 -220.14 -0.98 -11.91 16 13 C 0.06 1.26 4.67 -3.83 -0.02 1.24 16 14 C -0.12 -1.89 6.09 -26.65 -0.16 -2.05 16 15 C -0.11 -1.60 5.58 -26.61 -0.15 -1.75 16 16 C 0.10 1.49 2.92 -67.63 -0.20 1.30 16 17 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 18 N -0.85 -10.61 9.23 -4.60 -0.04 -10.65 16 19 C 0.08 1.49 1.72 -67.72 -0.12 1.37 16 20 H 0.04 0.79 6.62 -51.93 -0.34 0.45 16 21 C -0.15 -2.46 8.47 37.16 0.31 -2.14 16 22 H 0.05 1.10 6.80 -51.93 -0.35 0.74 16 23 H 0.02 0.48 6.42 -51.93 -0.33 0.15 16 24 H 0.06 1.30 4.89 -51.93 -0.25 1.05 16 25 H 0.27 8.15 8.73 -40.82 -0.36 7.79 16 26 H 0.02 0.47 6.73 -51.93 -0.35 0.12 16 27 H 0.09 1.92 6.24 -51.93 -0.32 1.60 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.34 3.48 9.04 -39.29 -0.36 3.12 16 33 H 0.34 3.88 7.07 -39.29 -0.28 3.60 16 34 H 0.06 1.12 6.22 -51.93 -0.32 0.80 16 35 H 0.05 0.70 6.58 -51.93 -0.34 0.36 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 261.85 15.07 3.95 3.95 Total: -1.00 -29.51 261.85 -6.95 -36.46 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -5.63 Total: 5.98 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -0.51 Total: -17.48 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: -0.27 Total: -49.65 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -4.50 Total: 20.74 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.51 -6.95 -36.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307152496.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.246 kcal (2) G-P(sol) polarization free energy of solvation -29.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds