Wall clock time and date at job start Mon Mar 30 2020 02:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46904 * 109.46661 * 119.99547 * 2 1 3 13 13 C 1.46848 * 111.00014 * 59.20996 * 12 2 1 14 14 C 1.53036 * 109.52316 * 174.15692 * 13 12 2 15 15 C 1.53125 * 109.27493 * 59.18196 * 14 13 12 16 16 C 1.53115 * 109.15944 * 302.34216 * 15 14 13 17 17 H 1.08998 * 109.50218 * 177.59833 * 16 15 14 18 18 N 1.46901 * 109.50450 * 297.71613 * 16 15 14 19 19 C 1.46846 * 110.99985 * 295.00123 * 12 2 1 20 20 H 1.08996 * 109.46654 * 65.82263 * 19 12 2 21 21 C 1.53003 * 109.46088 * 305.85412 * 19 12 2 22 22 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 24 24 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 26 26 H 1.09004 * 109.46171 * 294.17688 * 13 12 2 27 27 H 1.09002 * 109.46282 * 54.14005 * 13 12 2 28 28 H 1.08992 * 109.50442 * 299.24115 * 14 13 12 29 29 H 1.09000 * 109.50368 * 179.11584 * 14 13 12 30 30 H 1.09001 * 109.51860 * 182.44173 * 15 14 13 31 31 H 1.08999 * 109.52273 * 62.24934 * 15 14 13 32 32 H 1.00896 * 110.99895 * 299.80186 * 18 16 15 33 33 H 1.00898 * 110.99952 * 63.75972 * 18 16 15 34 34 H 1.08993 * 109.47257 * 60.00347 * 21 19 12 35 35 H 1.08999 * 109.46954 * 180.02562 * 21 19 12 36 36 H 1.09002 * 109.47147 * 299.99930 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 7 2.0196 -0.6924 1.1996 13 6 1.5333 -2.0774 1.2431 14 6 2.1775 -2.8088 2.4229 15 6 1.8220 -2.0822 3.7231 16 6 2.2963 -0.6292 3.6326 17 1 2.0082 -0.0953 4.5382 18 7 3.7579 -0.5985 3.4882 19 6 1.6487 0.0390 2.4176 20 1 0.5648 0.0282 2.5320 21 6 2.1355 1.4857 2.3117 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7173 1.1669 -3.4844 26 1 0.4499 -2.0783 1.3629 27 1 1.7962 -2.5840 0.3144 28 1 3.2600 -2.8203 2.2968 29 1 1.8044 -3.8321 2.4643 30 1 2.3142 -2.5745 4.5617 31 1 0.7420 -2.1044 3.8692 32 1 4.2086 -1.0342 4.2789 33 1 4.0451 -1.0325 2.6238 34 1 1.6737 1.9620 1.4470 35 1 1.8607 2.0287 3.2160 36 1 3.2194 1.4968 2.1969 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307152498.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:28 Heat of formation + Delta-G solvation = -1.905853 kcal Electronic energy + Delta-G solvation = -15475.142488 eV Core-core repulsion = 13186.746919 eV Total energy + Delta-G solvation = -2288.395570 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.16882 -35.01813 -32.34702 -32.26334 -29.50539 -27.81797 -25.90022 -25.16768 -23.27955 -21.22479 -19.93198 -17.89838 -16.35188 -15.81589 -14.77734 -14.57832 -14.29496 -13.94355 -13.62175 -13.21398 -12.52581 -12.29061 -11.99637 -11.43928 -11.33328 -11.28495 -11.04912 -10.95448 -10.70455 -10.48418 -10.26379 -10.20667 -10.12318 -9.84251 -9.27753 -8.75062 -8.32937 -8.16974 -7.03997 -5.97527 -4.00499 3.31373 3.39443 3.43437 4.43780 4.88206 5.12470 5.17991 5.29823 5.34825 5.41630 5.70714 5.92447 6.01912 6.07429 6.15650 6.22182 6.24112 6.31368 6.60887 6.67865 6.70215 6.78643 6.88042 6.91954 7.07955 7.21450 7.58103 7.65942 7.76952 7.89264 7.99340 8.22761 8.45988 8.68547 9.05866 9.64187 11.09618 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040327 B = 0.009960 C = 0.009189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.155193 B = 2810.470751 C = 3046.294561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.208 3.792 3 H 0.049 0.951 4 C -0.497 4.497 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.894 5.894 8 Si 0.894 3.106 9 H -0.274 1.274 10 H -0.287 1.287 11 H -0.285 1.285 12 N -0.522 5.522 13 C 0.060 3.940 14 C -0.119 4.119 15 C -0.155 4.155 16 C 0.101 3.899 17 H 0.069 0.931 18 N -0.834 5.834 19 C 0.086 3.914 20 H 0.030 0.970 21 C -0.135 4.135 22 H 0.026 0.974 23 H 0.007 0.993 24 H 0.086 0.914 25 H 0.259 0.741 26 H 0.022 0.978 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.324 0.676 33 H 0.355 0.645 34 H 0.057 0.943 35 H 0.039 0.961 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.238 -3.966 10.047 10.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.102 3.898 3 H 0.067 0.933 4 C -0.536 4.536 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.211 1.211 12 N -0.247 5.247 13 C -0.069 4.069 14 C -0.157 4.157 15 C -0.194 4.194 16 C -0.011 4.011 17 H 0.087 0.913 18 N -0.364 5.364 19 C -0.023 4.023 20 H 0.048 0.952 21 C -0.192 4.192 22 H 0.046 0.954 23 H 0.026 0.974 24 H 0.105 0.895 25 H 0.068 0.932 26 H 0.040 0.960 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.135 0.865 33 H 0.171 0.829 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.606 -3.056 9.868 10.455 hybrid contribution -0.860 -1.530 -0.812 1.934 sum 0.746 -4.586 9.057 10.179 Atomic orbital electron populations 1.22393 1.01210 0.99087 1.00401 1.19363 0.89465 0.95190 0.85760 0.93294 1.21177 1.30364 1.12253 0.89801 0.92033 1.24918 0.95329 0.95144 0.98939 1.69895 1.37260 1.23054 1.23165 0.86505 0.78497 0.79648 0.83113 1.19829 1.21310 1.21114 1.62219 1.59452 1.00947 1.02070 1.21965 0.96059 0.91041 0.97801 1.21642 1.01069 0.98061 0.94927 1.22409 1.01203 0.98199 0.97618 1.21444 0.88778 0.93195 0.97701 0.91296 1.58849 1.05722 1.64171 1.07669 1.21511 0.95774 0.94404 0.90619 0.95184 1.21747 1.02963 0.94369 1.00126 0.95447 0.97394 0.89518 0.93151 0.95983 0.89864 0.91949 0.92651 0.92942 0.92369 0.86517 0.82873 0.92408 0.94181 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 8.28 37.16 0.31 -3.87 16 2 C 0.21 5.16 1.95 -68.86 -0.13 5.02 16 3 H 0.05 1.34 5.92 -51.93 -0.31 1.03 16 4 C -0.50 -13.45 7.85 -34.44 -0.27 -13.72 16 5 H 0.06 1.67 6.76 -52.49 -0.35 1.31 16 6 C 0.06 1.58 5.31 -17.82 -0.09 1.48 16 7 N -0.89 -25.45 11.33 55.43 0.63 -24.83 16 8 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 N -0.52 -10.86 3.77 -220.13 -0.83 -11.69 16 13 C 0.06 1.15 4.66 -3.83 -0.02 1.14 16 14 C -0.12 -1.83 5.76 -26.65 -0.15 -1.99 16 15 C -0.15 -2.17 5.67 -26.61 -0.15 -2.32 16 16 C 0.10 1.55 3.16 -67.63 -0.21 1.33 16 17 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 18 N -0.83 -12.27 8.39 -4.60 -0.04 -12.31 16 19 C 0.09 1.59 1.77 -67.72 -0.12 1.47 16 20 H 0.03 0.59 6.73 -51.93 -0.35 0.24 16 21 C -0.13 -2.48 8.61 37.16 0.32 -2.16 16 22 H 0.03 0.65 6.52 -51.93 -0.34 0.31 16 23 H 0.01 0.16 6.65 -51.93 -0.35 -0.18 16 24 H 0.09 2.34 6.08 -51.93 -0.32 2.02 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 26 H 0.02 0.44 6.62 -51.93 -0.34 0.10 16 27 H 0.08 1.76 6.35 -51.93 -0.33 1.44 16 28 H 0.06 0.96 6.90 -51.93 -0.36 0.60 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.32 3.96 9.04 -39.29 -0.36 3.60 16 33 H 0.36 5.78 6.76 -39.29 -0.27 5.51 16 34 H 0.06 1.17 6.22 -51.93 -0.32 0.85 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 1.37 7.59 -51.93 -0.39 0.98 16 LS Contribution 264.52 15.07 3.99 3.99 Total: -1.00 -27.32 264.52 -7.43 -34.76 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -5.63 Total: 7.36 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -0.53 Total: -13.62 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.24 Total: -48.83 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -27.32 -7.43 -34.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307152498.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.851 kcal (2) G-P(sol) polarization free energy of solvation -27.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds