Wall clock time and date at job start Mon Mar 30 2020 02:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46904 * 109.46661 * 119.99547 * 2 1 3 13 13 C 1.46848 * 111.00014 * 59.20996 * 12 2 1 14 14 C 1.53036 * 109.52316 * 174.15692 * 13 12 2 15 15 C 1.53125 * 109.27493 * 59.18196 * 14 13 12 16 16 C 1.53115 * 109.15944 * 302.34216 * 15 14 13 17 17 H 1.08998 * 109.50218 * 177.59833 * 16 15 14 18 18 N 1.46901 * 109.50450 * 297.71613 * 16 15 14 19 19 C 1.46846 * 110.99985 * 295.00123 * 12 2 1 20 20 H 1.08996 * 109.46654 * 65.82263 * 19 12 2 21 21 C 1.53003 * 109.46088 * 305.85412 * 19 12 2 22 22 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 24 24 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 26 26 H 1.09004 * 109.46171 * 294.17688 * 13 12 2 27 27 H 1.09002 * 109.46282 * 54.14005 * 13 12 2 28 28 H 1.08992 * 109.50442 * 299.24115 * 14 13 12 29 29 H 1.09000 * 109.50368 * 179.11584 * 14 13 12 30 30 H 1.09001 * 109.51860 * 182.44173 * 15 14 13 31 31 H 1.08999 * 109.52273 * 62.24934 * 15 14 13 32 32 H 1.00896 * 110.99895 * 299.80186 * 18 16 15 33 33 H 1.00898 * 110.99952 * 63.75972 * 18 16 15 34 34 H 1.08993 * 109.47257 * 60.00347 * 21 19 12 35 35 H 1.08999 * 109.46954 * 180.02562 * 21 19 12 36 36 H 1.09002 * 109.47147 * 299.99930 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 7 2.0196 -0.6924 1.1996 13 6 1.5333 -2.0774 1.2431 14 6 2.1775 -2.8088 2.4229 15 6 1.8220 -2.0822 3.7231 16 6 2.2963 -0.6292 3.6326 17 1 2.0082 -0.0953 4.5382 18 7 3.7579 -0.5985 3.4882 19 6 1.6487 0.0390 2.4176 20 1 0.5648 0.0282 2.5320 21 6 2.1355 1.4857 2.3117 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7173 1.1669 -3.4844 26 1 0.4499 -2.0783 1.3629 27 1 1.7962 -2.5840 0.3144 28 1 3.2600 -2.8203 2.2968 29 1 1.8044 -3.8321 2.4643 30 1 2.3142 -2.5745 4.5617 31 1 0.7420 -2.1044 3.8692 32 1 4.2086 -1.0342 4.2789 33 1 4.0451 -1.0325 2.6238 34 1 1.6737 1.9620 1.4470 35 1 1.8607 2.0287 3.2160 36 1 3.2194 1.4968 2.1969 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307152498.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:28 Heat of formation + Delta-G solvation = -20.729110 kcal Electronic energy + Delta-G solvation = -15475.958726 eV Core-core repulsion = 13186.746919 eV Total energy + Delta-G solvation = -2289.211807 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.65334 -36.66321 -34.21765 -33.67260 -31.09710 -29.42670 -27.31285 -27.25067 -24.85861 -22.73018 -21.53468 -19.38937 -18.25977 -17.39593 -16.47506 -16.09362 -15.90187 -15.32467 -15.10526 -14.79294 -14.11901 -13.80544 -13.73376 -13.13741 -12.90558 -12.85377 -12.72250 -12.69360 -12.47141 -12.17400 -11.97282 -11.91660 -11.75154 -11.40512 -10.84358 -10.72849 -10.40383 -9.33663 -8.73138 -8.08181 -6.17791 1.40847 1.43114 1.54243 2.43986 3.21081 3.36987 3.84957 3.92706 4.08112 4.19860 4.33422 4.55671 4.61078 4.66465 4.75430 4.84917 4.90131 4.93051 5.01129 5.07265 5.09103 5.19418 5.23205 5.37596 5.40184 5.55163 5.62450 5.78217 5.83693 6.26531 6.48431 6.57612 6.85984 6.90192 6.98016 7.51092 8.98228 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040327 B = 0.009960 C = 0.009189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.155193 B = 2810.470751 C = 3046.294561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.213 3.787 3 H 0.019 0.981 4 C -0.509 4.509 5 H 0.056 0.944 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.957 3.043 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.523 5.523 13 C 0.060 3.940 14 C -0.111 4.111 15 C -0.148 4.148 16 C 0.107 3.893 17 H 0.087 0.913 18 N -0.838 5.838 19 C 0.082 3.918 20 H 0.021 0.979 21 C -0.127 4.127 22 H 0.025 0.975 23 H 0.020 0.980 24 H 0.058 0.942 25 H 0.259 0.741 26 H 0.012 0.988 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.342 0.658 33 H 0.346 0.654 34 H 0.028 0.972 35 H 0.065 0.935 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.865 -5.208 11.571 12.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.106 3.894 3 H 0.037 0.963 4 C -0.548 4.548 5 H 0.075 0.925 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.783 3.217 9 H -0.192 1.192 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.248 5.248 13 C -0.068 4.068 14 C -0.149 4.149 15 C -0.187 4.187 16 C -0.005 4.005 17 H 0.105 0.895 18 N -0.369 5.369 19 C -0.027 4.027 20 H 0.039 0.961 21 C -0.185 4.185 22 H 0.044 0.956 23 H 0.039 0.961 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.030 0.970 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.155 0.845 33 H 0.161 0.839 34 H 0.047 0.953 35 H 0.084 0.916 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.242 -4.310 11.425 12.415 hybrid contribution -1.060 -1.113 -1.249 1.980 sum 1.182 -5.423 10.176 11.591 Atomic orbital electron populations 1.22184 1.01143 0.98610 0.99601 1.19091 0.89337 0.93812 0.87159 0.96345 1.21445 1.30200 1.12135 0.91002 0.92543 1.25677 0.95594 0.95842 1.01794 1.70025 1.38219 1.24259 1.23730 0.85524 0.77971 0.78664 0.79548 1.19160 1.20948 1.20894 1.62136 1.59335 1.01619 1.01668 1.21964 0.95789 0.90294 0.98744 1.21576 1.00890 0.98639 0.93756 1.22362 1.01590 0.97140 0.97637 1.21377 0.88869 0.93988 0.96274 0.89498 1.58790 1.05492 1.64582 1.08008 1.21645 0.95630 0.94464 0.90953 0.96125 1.21663 1.01983 0.94752 1.00066 0.95562 0.96064 0.92305 0.93167 0.97000 0.92363 0.91640 0.90694 0.89943 0.92252 0.84500 0.83880 0.95298 0.91625 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.78 8.28 71.98 0.60 -7.19 16 2 C 0.21 10.83 1.95 44.17 0.09 10.92 16 3 H 0.02 1.06 5.92 -2.39 -0.01 1.05 16 4 C -0.51 -28.07 7.85 25.60 0.20 -27.87 16 5 H 0.06 3.10 6.76 -2.91 -0.02 3.08 16 6 C 0.01 0.50 5.31 84.65 0.45 0.95 16 7 N -0.92 -53.71 11.33 21.45 0.24 -53.47 16 8 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 N -0.52 -21.74 3.77 -850.36 -3.21 -24.94 16 13 C 0.06 2.30 4.66 86.32 0.40 2.70 16 14 C -0.11 -3.12 5.76 30.65 0.18 -2.94 16 15 C -0.15 -3.61 5.67 30.67 0.17 -3.43 16 16 C 0.11 2.96 3.16 44.97 0.14 3.10 16 17 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 18 N -0.84 -22.38 8.39 -168.46 -1.41 -23.79 16 19 C 0.08 2.94 1.77 44.94 0.08 3.02 16 20 H 0.02 0.79 6.73 -2.39 -0.02 0.77 16 21 C -0.13 -4.64 8.61 71.98 0.62 -4.02 16 22 H 0.03 1.26 6.52 -2.39 -0.02 1.24 16 23 H 0.02 0.95 6.65 -2.39 -0.02 0.93 16 24 H 0.06 3.26 6.08 -2.38 -0.01 3.25 16 25 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 26 H 0.01 0.47 6.62 -2.38 -0.02 0.45 16 27 H 0.06 2.48 6.35 -2.39 -0.02 2.47 16 28 H 0.06 1.83 6.90 -2.39 -0.02 1.81 16 29 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.34 7.12 9.04 -89.70 -0.81 6.31 16 33 H 0.35 10.56 6.76 -89.70 -0.61 9.96 16 34 H 0.03 1.19 6.22 -2.39 -0.01 1.18 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.06 2.37 7.59 -2.39 -0.02 2.35 16 Total: -1.00 -59.16 264.52 0.24 -58.92 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -0.34 Total: 21.79 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 2.93 Total: -24.78 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -4.38 Total: -102.21 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -59.16 0.24 -58.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307152498.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.194 kcal (2) G-P(sol) polarization free energy of solvation -59.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds