Wall clock time and date at job start Mon Mar 30 2020 02:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.47118 * 2 1 4 4 C 1.50700 * 109.46992 * 240.00431 * 2 1 3 5 5 H 1.07994 * 119.99751 * 239.99736 * 4 2 1 6 6 C 1.37876 * 120.00032 * 59.72240 * 4 2 1 7 7 N 1.31514 * 120.00300 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47191 * 90.00115 * 8 6 4 10 10 H 1.48503 * 109.47571 * 210.00239 * 8 6 4 11 11 H 1.48499 * 109.47204 * 330.00227 * 8 6 4 12 12 N 1.46893 * 109.46825 * 120.00171 * 2 1 3 13 13 C 1.46847 * 111.00122 * 60.21957 * 12 2 1 14 14 C 1.53035 * 109.52288 * 185.83663 * 13 12 2 15 15 C 1.53121 * 109.27976 * 300.81692 * 14 13 12 16 16 C 1.53116 * 109.15757 * 57.65543 * 15 14 13 17 17 H 1.09001 * 109.49879 * 182.40634 * 16 15 14 18 18 N 1.46894 * 109.53863 * 62.30827 * 16 15 14 19 19 C 1.46854 * 110.99913 * 184.42424 * 12 2 1 20 20 H 1.09004 * 109.46182 * 294.18160 * 19 12 2 21 21 C 1.52999 * 109.46206 * 54.15352 * 19 12 2 22 22 H 1.09006 * 109.47177 * 291.34149 * 1 2 3 23 23 H 1.08999 * 109.47079 * 51.33711 * 1 2 3 24 24 H 1.09000 * 109.47166 * 171.33847 * 1 2 3 25 25 H 0.97001 * 120.00739 * 179.97438 * 7 6 4 26 26 H 1.08999 * 109.45933 * 305.84930 * 13 12 2 27 27 H 1.08998 * 109.46267 * 65.81680 * 13 12 2 28 28 H 1.09003 * 109.49954 * 180.87562 * 14 13 12 29 29 H 1.09001 * 109.50747 * 60.75872 * 14 13 12 30 30 H 1.08998 * 109.51938 * 297.75102 * 15 14 13 31 31 H 1.08998 * 109.52045 * 177.56082 * 15 14 13 32 32 H 1.00899 * 111.00058 * 60.17397 * 18 16 15 33 33 H 1.00897 * 111.00200 * 184.12933 * 18 16 15 34 34 H 1.09000 * 109.46833 * 52.24173 * 21 19 12 35 35 H 1.08995 * 109.46975 * 172.23792 * 21 19 12 36 36 H 1.09002 * 109.47464 * 292.24104 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6945 -0.2425 -2.4827 7 7 0.9344 0.8239 -2.6034 8 14 2.3177 -1.1226 -4.0080 9 1 1.3433 -2.1690 -4.4086 10 1 2.4762 -0.1443 -5.1140 11 1 3.6293 -1.7540 -3.7140 12 7 2.0196 -0.6925 1.1994 13 6 1.5531 -2.0845 1.2306 14 6 1.9578 -2.7299 2.5579 15 6 3.4815 -2.6794 2.7007 16 6 3.9461 -1.2229 2.6164 17 1 5.0339 -1.1841 2.6746 18 7 3.3678 -0.4575 3.7288 19 6 3.4838 -0.6212 1.2874 20 1 3.9249 -1.1806 0.4624 21 6 3.9287 0.8405 1.2076 22 1 -0.3634 0.3740 0.9572 23 1 -0.3633 0.6420 -0.8024 24 1 -0.3633 -1.0159 -0.1548 25 1 0.6970 1.1532 -3.4843 26 1 0.4677 -2.1060 1.1325 27 1 2.0032 -2.6371 0.4059 28 1 1.6249 -3.7677 2.5744 29 1 1.4968 -2.1862 3.3825 30 1 3.9418 -3.2557 1.8982 31 1 3.7711 -3.0990 3.6642 32 1 3.6588 -0.8359 4.6178 33 1 3.6053 0.5205 3.6569 34 1 3.3821 1.4274 1.9456 35 1 4.9976 0.9064 1.4103 36 1 3.7234 1.2289 0.2100 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307152499.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:31 Heat of formation + Delta-G solvation = -2.029442 kcal Electronic energy + Delta-G solvation = -15517.377946 eV Core-core repulsion = 13228.977017 eV Total energy + Delta-G solvation = -2288.400929 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.85233 -34.86370 -32.53945 -32.00736 -29.69635 -27.66387 -25.94400 -25.04565 -23.08653 -20.81927 -19.54377 -18.36467 -15.98931 -15.54868 -15.33360 -14.58186 -14.18395 -13.86223 -13.26276 -12.87416 -12.63504 -12.33977 -11.89851 -11.39762 -11.31345 -11.12338 -10.99821 -10.81221 -10.51477 -10.32371 -10.20843 -10.07907 -9.91093 -9.55941 -9.32112 -8.92202 -8.31561 -8.07036 -6.88884 -5.91684 -4.04608 3.28829 3.36058 3.38709 4.43956 4.90705 5.21810 5.29317 5.33753 5.39743 5.64922 5.87458 6.03133 6.09916 6.22459 6.28163 6.33184 6.48785 6.52935 6.66266 6.77382 6.92277 6.98147 7.08593 7.13481 7.18250 7.34213 7.61517 7.72181 7.81656 7.90973 8.10534 8.30799 8.48676 8.61991 9.07938 9.62655 11.07266 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036939 B = 0.010393 C = 0.010312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.815148 B = 2693.534072 C = 2714.574078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.202 3.798 3 H 0.043 0.957 4 C -0.538 4.538 5 H 0.053 0.947 6 C 0.068 3.932 7 N -0.887 5.887 8 Si 0.884 3.116 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.512 5.512 13 C 0.065 3.935 14 C -0.108 4.108 15 C -0.110 4.110 16 C 0.099 3.901 17 H 0.022 0.978 18 N -0.824 5.824 19 C 0.098 3.902 20 H 0.041 0.959 21 C -0.143 4.143 22 H 0.015 0.985 23 H 0.076 0.924 24 H 0.026 0.974 25 H 0.259 0.741 26 H 0.066 0.934 27 H 0.028 0.972 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.324 0.676 33 H 0.338 0.662 34 H 0.057 0.943 35 H 0.037 0.963 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.709 -3.306 8.943 10.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.096 3.904 3 H 0.061 0.939 4 C -0.578 4.578 5 H 0.071 0.929 6 C -0.134 4.134 7 N -0.526 5.526 8 Si 0.712 3.288 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.236 5.236 13 C -0.063 4.063 14 C -0.146 4.146 15 C -0.148 4.148 16 C -0.013 4.013 17 H 0.039 0.961 18 N -0.354 5.354 19 C -0.012 4.012 20 H 0.059 0.941 21 C -0.201 4.201 22 H 0.034 0.966 23 H 0.094 0.906 24 H 0.045 0.955 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.135 0.865 33 H 0.152 0.848 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.728 -3.166 8.904 10.159 hybrid contribution 1.698 -0.766 -1.538 2.415 sum 5.426 -3.932 7.366 9.958 Atomic orbital electron populations 1.21761 0.98010 0.99878 0.98788 1.19346 0.92092 0.94532 0.84436 0.93875 1.21743 1.31452 1.12724 0.91858 0.92880 1.24896 0.94948 0.94866 0.98711 1.69903 1.36465 1.22973 1.23236 0.86735 0.79208 0.79569 0.83300 1.20793 1.21269 1.20177 1.62367 1.07147 1.13077 1.41032 1.21838 0.99959 0.90111 0.94438 1.21503 0.94708 0.98580 0.99828 1.21563 0.97704 0.95430 1.00128 1.21422 0.93804 0.93564 0.92528 0.96069 1.58532 1.67232 1.06291 1.03336 1.21311 0.90843 0.95598 0.93419 0.94105 1.21824 0.98257 0.96753 1.03218 0.96575 0.90558 0.95537 0.93061 0.91561 0.95414 0.93640 0.90667 0.92582 0.93233 0.86497 0.84792 0.92354 0.94433 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.34 37.16 0.31 -2.83 16 2 C 0.20 5.06 1.97 -68.86 -0.14 4.93 16 3 H 0.04 1.17 6.13 -51.93 -0.32 0.86 16 4 C -0.54 -14.53 7.17 -34.44 -0.25 -14.78 16 5 H 0.05 1.46 5.84 -52.49 -0.31 1.15 16 6 C 0.07 1.87 5.30 -17.82 -0.09 1.77 16 7 N -0.89 -25.22 11.41 55.43 0.63 -24.59 16 8 Si 0.88 21.40 29.54 -169.99 -5.02 16.38 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.51 -11.01 4.34 -220.14 -0.95 -11.97 16 13 C 0.07 1.33 4.80 -3.83 -0.02 1.31 16 14 C -0.11 -1.82 5.93 -26.65 -0.16 -1.98 16 15 C -0.11 -1.70 5.67 -26.61 -0.15 -1.85 16 16 C 0.10 1.57 3.12 -67.64 -0.21 1.36 16 17 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 18 N -0.82 -11.92 8.44 -4.60 -0.04 -11.96 16 19 C 0.10 1.91 1.86 -67.72 -0.13 1.79 16 20 H 0.04 0.90 6.93 -51.93 -0.36 0.54 16 21 C -0.14 -2.63 7.91 37.16 0.29 -2.34 16 22 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.08 2.05 6.34 -51.93 -0.33 1.72 16 24 H 0.03 0.64 6.74 -51.93 -0.35 0.29 16 25 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.07 1.41 6.21 -51.93 -0.32 1.08 16 27 H 0.03 0.62 6.66 -51.93 -0.35 0.27 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 1.31 7.73 -51.93 -0.40 0.91 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.32 3.90 9.04 -39.29 -0.36 3.54 16 33 H 0.34 4.72 7.19 -39.29 -0.28 4.44 16 34 H 0.06 1.03 6.98 -51.93 -0.36 0.67 16 35 H 0.04 0.59 8.13 -51.93 -0.42 0.17 16 36 H 0.07 1.49 6.71 -51.93 -0.35 1.14 16 LS Contribution 266.75 15.07 4.02 4.02 Total: -1.00 -27.95 266.75 -7.65 -35.61 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.75 Total: 5.12 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -0.54 Total: -12.60 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.36 Total: -48.52 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.95 -7.65 -35.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307152499.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.576 kcal (2) G-P(sol) polarization free energy of solvation -27.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds