Wall clock time and date at job start Mon Mar 30 2020 02:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.48535 * 2 1 4 4 N 1.46956 * 109.48866 * 120.06418 * 2 1 3 5 5 C 1.46992 * 110.89694 * 179.28799 * 4 2 1 6 6 C 1.53056 * 109.33916 * 300.69699 * 5 4 2 7 7 N 1.46956 * 109.38342 * 58.38486 * 6 5 4 8 8 C 1.46897 * 111.00174 * 176.80239 * 7 6 5 9 9 C 1.52995 * 109.47214 * 66.04770 * 8 7 6 10 10 C 1.50701 * 109.47544 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99319 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00396 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99836 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00091 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47182 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47418 * 120.00265 * 14 12 10 17 17 H 1.48507 * 109.47004 * 240.00098 * 14 12 10 18 18 C 1.46954 * 110.88102 * 300.67443 * 7 6 5 19 19 H 1.09002 * 109.48674 * 299.32520 * 18 7 6 20 20 C 1.53000 * 109.48914 * 179.28794 * 18 7 6 21 21 H 1.09002 * 109.46996 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47263 * 300.04510 * 1 2 3 23 23 H 1.08999 * 109.47262 * 60.03985 * 1 2 3 24 24 H 1.00905 * 110.99867 * 303.15865 * 4 2 1 25 25 H 1.08999 * 109.52745 * 180.72568 * 5 4 2 26 26 H 1.09001 * 109.48186 * 60.64012 * 5 4 2 27 27 H 1.09002 * 109.48813 * 298.40763 * 6 5 4 28 28 H 1.09002 * 109.48870 * 178.36652 * 6 5 4 29 29 H 1.08994 * 109.47217 * 186.04942 * 8 7 6 30 30 H 1.09004 * 109.47164 * 306.04652 * 8 7 6 31 31 H 1.09007 * 109.46870 * 299.99983 * 9 8 7 32 32 H 1.08994 * 109.47313 * 59.99885 * 9 8 7 33 33 H 0.96996 * 120.00219 * 180.02562 * 13 12 10 34 34 H 1.08999 * 109.47344 * 59.99629 * 20 18 7 35 35 H 1.09000 * 109.47374 * 179.97438 * 20 18 7 36 36 H 1.09003 * 109.47068 * 299.99754 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 7 2.0203 -0.6940 1.1990 5 6 3.4897 -0.7269 1.2217 6 6 3.9999 -1.4491 -0.0276 7 7 3.5097 -0.7551 -1.2265 8 6 4.0411 -1.3747 -2.4478 9 6 3.4758 -2.7894 -2.5895 10 6 4.0215 -3.4253 -3.8420 11 1 4.7036 -2.8756 -4.4736 12 6 3.6507 -4.7093 -4.1811 13 7 2.8205 -5.3788 -3.4117 14 14 4.3277 -5.4978 -5.7333 15 1 5.2342 -4.5422 -6.4190 16 1 5.0813 -6.7266 -5.3762 17 1 3.2051 -5.8512 -6.6390 18 6 2.0406 -0.7223 -1.2489 19 1 1.6544 -1.7415 -1.2634 20 6 1.5656 0.0213 -2.4988 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5145 0.8896 23 1 -0.3634 0.5132 -0.8903 24 1 1.6552 -0.2684 2.0379 25 1 3.8285 -1.2568 2.1119 26 1 3.8760 0.2923 1.2358 27 1 3.6360 -2.4766 -0.0278 28 1 5.0899 -1.4495 -0.0277 29 1 3.7509 -0.7792 -3.3133 30 1 5.1284 -1.4223 -2.3876 31 1 3.7661 -3.3850 -1.7239 32 1 2.3886 -2.7418 -2.6497 33 1 2.5599 -6.2822 -3.6500 34 1 1.9310 -0.4923 -3.3880 35 1 0.4760 0.0451 -2.5153 36 1 1.9514 1.0407 -2.4836 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307206516.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:14 Heat of formation + Delta-G solvation = -4.103985 kcal Electronic energy + Delta-G solvation = -15008.855264 eV Core-core repulsion = 12720.364377 eV Total energy + Delta-G solvation = -2288.490888 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.20482 -35.10040 -32.97992 -32.71333 -29.44007 -28.00137 -26.61059 -24.76916 -22.62566 -21.46674 -20.62361 -18.45193 -16.41410 -15.87277 -15.37114 -14.90345 -14.50120 -14.12682 -13.62408 -13.08600 -12.93030 -12.39954 -12.08284 -11.99091 -11.51252 -11.43073 -11.33426 -11.26439 -10.91050 -10.69361 -10.55716 -10.31363 -10.02598 -9.85069 -9.56713 -9.07135 -8.33074 -8.24994 -7.41879 -5.99070 -4.02082 3.30897 3.38447 3.42627 4.35721 4.44510 4.57744 5.10687 5.31524 5.36063 5.45006 5.60372 5.69066 5.70880 5.84241 5.88192 5.95193 6.11480 6.15483 6.26030 6.33877 6.44218 6.49587 6.61744 6.64761 6.80892 6.98866 7.21393 7.49219 7.62955 7.66145 7.76327 7.91318 8.03445 8.44953 9.05553 9.61954 11.11824 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042767 B = 0.007776 C = 0.007470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.549723 B = 3600.060873 C = 3747.325218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.092 3.908 3 H 0.039 0.961 4 N -0.687 5.687 5 C 0.063 3.937 6 C 0.053 3.947 7 N -0.541 5.541 8 C 0.055 3.945 9 C -0.008 4.008 10 C -0.519 4.519 11 H 0.055 0.945 12 C 0.057 3.943 13 N -0.893 5.893 14 Si 0.891 3.109 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.085 3.915 19 H 0.060 0.940 20 C -0.146 4.146 21 H 0.064 0.936 22 H 0.049 0.951 23 H 0.063 0.937 24 H 0.335 0.665 25 H 0.072 0.928 26 H 0.031 0.969 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.016 0.984 32 H 0.020 0.980 33 H 0.259 0.741 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.268 10.426 7.257 12.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.018 4.018 3 H 0.057 0.943 4 N -0.319 5.319 5 C -0.066 4.066 6 C -0.076 4.076 7 N -0.265 5.265 8 C -0.072 4.072 9 C -0.046 4.046 10 C -0.558 4.558 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.719 3.281 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.024 4.024 19 H 0.078 0.922 20 C -0.204 4.204 21 H 0.083 0.917 22 H 0.068 0.932 23 H 0.082 0.918 24 H 0.152 0.848 25 H 0.091 0.909 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.034 0.966 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.229 10.130 7.008 12.518 hybrid contribution 0.287 -0.557 -0.618 0.880 sum -1.942 9.573 6.391 11.673 Atomic orbital electron populations 1.21864 0.94591 1.02671 1.01267 1.21550 0.94569 0.95299 0.90426 0.94320 1.60509 1.08645 1.58284 1.04426 1.21986 0.87481 0.98890 0.98293 1.22096 0.99162 0.97064 0.89288 1.62561 1.07621 1.53230 1.03085 1.22340 0.98608 0.96268 0.90008 1.19646 0.96757 0.91045 0.97142 1.21208 1.27456 0.99102 1.07997 0.92636 1.25025 0.95153 0.97371 0.96861 1.69983 1.34003 1.11515 1.37759 0.86559 0.78848 0.79324 0.83415 1.19722 1.21045 1.21037 1.21594 0.88480 0.99028 0.93272 0.92164 1.21907 1.00142 1.00247 0.98087 0.91713 0.93177 0.91786 0.84806 0.90921 0.95043 0.93090 0.91022 0.91650 0.92302 0.96584 0.96176 0.93102 0.91265 0.92610 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.15 37.16 0.34 -1.51 16 2 C 0.09 1.36 2.70 -67.66 -0.18 1.18 16 3 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 4 N -0.69 -10.02 6.55 -106.56 -0.70 -10.72 16 5 C 0.06 0.92 6.72 -3.74 -0.03 0.90 16 6 C 0.05 0.94 5.27 -3.76 -0.02 0.92 16 7 N -0.54 -10.25 4.73 -226.50 -1.07 -11.33 16 8 C 0.05 1.18 4.77 -3.83 -0.02 1.16 16 9 C -0.01 -0.20 4.26 -27.89 -0.12 -0.32 16 10 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 11 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 14 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 C 0.09 1.53 1.52 -67.66 -0.10 1.43 16 19 H 0.06 1.30 6.45 -51.93 -0.33 0.97 16 20 C -0.15 -2.40 8.54 37.16 0.32 -2.08 16 21 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.75 6.48 -51.93 -0.34 0.41 16 24 H 0.33 3.98 8.83 -39.29 -0.35 3.64 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 1.06 6.63 -51.93 -0.34 0.72 16 28 H 0.07 1.21 8.11 -51.93 -0.42 0.79 16 29 H 0.07 1.39 6.38 -51.93 -0.33 1.06 16 30 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 31 H 0.02 0.45 6.62 -51.93 -0.34 0.11 16 32 H 0.02 0.56 6.44 -51.93 -0.33 0.23 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.07 1.28 6.40 -51.93 -0.33 0.94 16 35 H 0.05 0.80 6.48 -51.93 -0.34 0.47 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 274.73 15.07 4.14 4.14 Total: -1.00 -30.39 274.73 -8.09 -38.49 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -5.96 Total: 0.92 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -0.22 Total: -11.89 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: -1.03 Total: -48.50 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.39 -8.09 -38.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307206516.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.383 kcal (2) G-P(sol) polarization free energy of solvation -30.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds