Wall clock time and date at job start Mon Mar 30 2020 02:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.48535 * 2 1 4 4 N 1.46956 * 109.48866 * 120.06418 * 2 1 3 5 5 C 1.46992 * 110.89694 * 179.28799 * 4 2 1 6 6 C 1.53056 * 109.33916 * 300.69699 * 5 4 2 7 7 N 1.46956 * 109.38342 * 58.38486 * 6 5 4 8 8 C 1.46897 * 111.00174 * 176.80239 * 7 6 5 9 9 C 1.52995 * 109.47214 * 66.04770 * 8 7 6 10 10 C 1.50701 * 109.47544 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99319 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00396 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99836 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00091 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47182 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47418 * 120.00265 * 14 12 10 17 17 H 1.48507 * 109.47004 * 240.00098 * 14 12 10 18 18 C 1.46954 * 110.88102 * 300.67443 * 7 6 5 19 19 H 1.09002 * 109.48674 * 299.32520 * 18 7 6 20 20 C 1.53000 * 109.48914 * 179.28794 * 18 7 6 21 21 H 1.09002 * 109.46996 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47263 * 300.04510 * 1 2 3 23 23 H 1.08999 * 109.47262 * 60.03985 * 1 2 3 24 24 H 1.00905 * 110.99867 * 303.15865 * 4 2 1 25 25 H 1.08999 * 109.52745 * 180.72568 * 5 4 2 26 26 H 1.09001 * 109.48186 * 60.64012 * 5 4 2 27 27 H 1.09002 * 109.48813 * 298.40763 * 6 5 4 28 28 H 1.09002 * 109.48870 * 178.36652 * 6 5 4 29 29 H 1.08994 * 109.47217 * 186.04942 * 8 7 6 30 30 H 1.09004 * 109.47164 * 306.04652 * 8 7 6 31 31 H 1.09007 * 109.46870 * 299.99983 * 9 8 7 32 32 H 1.08994 * 109.47313 * 59.99885 * 9 8 7 33 33 H 0.96996 * 120.00219 * 180.02562 * 13 12 10 34 34 H 1.08999 * 109.47344 * 59.99629 * 20 18 7 35 35 H 1.09000 * 109.47374 * 179.97438 * 20 18 7 36 36 H 1.09003 * 109.47068 * 299.99754 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 7 2.0203 -0.6940 1.1990 5 6 3.4897 -0.7269 1.2217 6 6 3.9999 -1.4491 -0.0276 7 7 3.5097 -0.7551 -1.2265 8 6 4.0411 -1.3747 -2.4478 9 6 3.4758 -2.7894 -2.5895 10 6 4.0215 -3.4253 -3.8420 11 1 4.7036 -2.8756 -4.4736 12 6 3.6507 -4.7093 -4.1811 13 7 2.8205 -5.3788 -3.4117 14 14 4.3277 -5.4978 -5.7333 15 1 5.2342 -4.5422 -6.4190 16 1 5.0813 -6.7266 -5.3762 17 1 3.2051 -5.8512 -6.6390 18 6 2.0406 -0.7223 -1.2489 19 1 1.6544 -1.7415 -1.2634 20 6 1.5656 0.0213 -2.4988 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5145 0.8896 23 1 -0.3634 0.5132 -0.8903 24 1 1.6552 -0.2684 2.0379 25 1 3.8285 -1.2568 2.1119 26 1 3.8760 0.2923 1.2358 27 1 3.6360 -2.4766 -0.0278 28 1 5.0899 -1.4495 -0.0277 29 1 3.7509 -0.7792 -3.3133 30 1 5.1284 -1.4223 -2.3876 31 1 3.7661 -3.3850 -1.7239 32 1 2.3886 -2.7418 -2.6497 33 1 2.5599 -6.2822 -3.6500 34 1 1.9310 -0.4923 -3.3880 35 1 0.4760 0.0451 -2.5153 36 1 1.9514 1.0407 -2.4836 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307206516.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:14 Heat of formation + Delta-G solvation = -26.818123 kcal Electronic energy + Delta-G solvation = -15009.840223 eV Core-core repulsion = 12720.364377 eV Total energy + Delta-G solvation = -2289.475847 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.62626 -36.65400 -34.79675 -34.26204 -31.34593 -29.27662 -28.11708 -26.50376 -24.43539 -22.79875 -22.18102 -19.98362 -18.57386 -17.16715 -16.82861 -16.56416 -16.21357 -15.67866 -14.99629 -14.64018 -14.51858 -14.20000 -13.45045 -13.33127 -13.26751 -13.04963 -12.81157 -12.70573 -12.53364 -12.45340 -12.00890 -11.87916 -11.73056 -11.53843 -11.32715 -11.11574 -10.56989 -9.41679 -9.09669 -8.22275 -6.35213 1.37272 1.37542 1.51354 2.37905 3.05819 3.09723 3.23741 3.85023 4.04735 4.15408 4.35703 4.37876 4.44311 4.53406 4.60129 4.68038 4.76538 4.81125 4.86979 4.93913 4.99672 5.04418 5.07890 5.22420 5.31825 5.39889 5.50070 5.56814 5.75565 6.01019 6.02917 6.27968 6.31431 6.59968 6.82997 7.34339 8.88888 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042767 B = 0.007776 C = 0.007470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.549723 B = 3600.060873 C = 3747.325218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.097 3.903 3 H 0.051 0.949 4 N -0.701 5.701 5 C 0.071 3.929 6 C 0.049 3.951 7 N -0.531 5.531 8 C 0.068 3.932 9 C 0.008 3.992 10 C -0.542 4.542 11 H 0.062 0.938 12 C -0.001 4.001 13 N -0.933 5.933 14 Si 0.967 3.033 15 H -0.260 1.260 16 H -0.278 1.278 17 H -0.278 1.278 18 C 0.082 3.918 19 H 0.013 0.987 20 C -0.140 4.140 21 H 0.045 0.955 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.355 0.645 25 H 0.093 0.907 26 H 0.047 0.953 27 H 0.010 0.990 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.061 0.939 31 H -0.017 1.017 32 H -0.008 1.008 33 H 0.263 0.737 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.019 11.992 7.295 14.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.013 4.013 3 H 0.069 0.931 4 N -0.335 5.335 5 C -0.058 4.058 6 C -0.080 4.080 7 N -0.254 5.254 8 C -0.059 4.059 9 C -0.030 4.030 10 C -0.580 4.580 11 H 0.080 0.920 12 C -0.199 4.199 13 N -0.573 5.573 14 Si 0.791 3.209 15 H -0.183 1.183 16 H -0.204 1.204 17 H -0.203 1.203 18 C -0.027 4.027 19 H 0.031 0.969 20 C -0.198 4.198 21 H 0.064 0.936 22 H 0.095 0.905 23 H 0.093 0.907 24 H 0.175 0.825 25 H 0.111 0.889 26 H 0.065 0.935 27 H 0.029 0.971 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.001 0.999 32 H 0.010 0.990 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.984 11.720 7.067 13.829 hybrid contribution 0.186 -1.063 -0.583 1.227 sum -1.798 10.656 6.484 12.603 Atomic orbital electron populations 1.21836 0.92821 1.02017 1.03187 1.21495 0.95923 0.95024 0.88832 0.93079 1.60438 1.08733 1.59034 1.05284 1.21918 0.87601 0.99379 0.96896 1.22194 0.99740 0.95374 0.90688 1.62651 1.08393 1.52040 1.02336 1.22101 0.98476 0.93537 0.91817 1.19439 0.94995 0.93455 0.95152 1.21652 1.27707 0.99790 1.08852 0.91985 1.26015 0.95286 0.98017 1.00546 1.70131 1.35318 1.11999 1.39887 0.85374 0.78365 0.78340 0.78824 1.18346 1.20402 1.20324 1.21687 0.87584 0.97266 0.96181 0.96909 1.21855 1.01442 1.00505 0.95958 0.93622 0.90465 0.90689 0.82546 0.88900 0.93464 0.97147 0.90240 0.91126 0.92059 0.99906 0.98996 0.92860 0.94010 0.90669 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.15 71.98 0.66 -2.62 16 2 C 0.10 2.73 2.70 44.92 0.12 2.85 16 3 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 4 N -0.70 -19.29 6.55 -491.04 -3.21 -22.50 16 5 C 0.07 1.96 6.72 86.30 0.58 2.54 16 6 C 0.05 1.77 5.27 86.31 0.45 2.22 16 7 N -0.53 -20.23 4.73 -870.51 -4.12 -24.35 16 8 C 0.07 3.01 4.77 86.30 0.41 3.42 16 9 C 0.01 0.43 4.26 29.85 0.13 0.56 16 10 C -0.54 -31.68 9.11 25.60 0.23 -31.44 16 11 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 12 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 13 N -0.93 -58.55 13.29 21.45 0.28 -58.26 16 14 Si 0.97 45.19 29.54 68.60 2.03 47.21 16 15 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 C 0.08 2.97 1.52 44.92 0.07 3.04 16 19 H 0.01 0.59 6.45 -2.39 -0.02 0.57 16 20 C -0.14 -4.52 8.54 71.98 0.61 -3.90 16 21 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.07 1.57 6.48 -2.39 -0.02 1.56 16 24 H 0.35 7.44 8.83 -89.69 -0.79 6.65 16 25 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.01 0.45 6.63 -2.39 -0.02 0.44 16 28 H 0.08 2.70 8.11 -2.39 -0.02 2.68 16 29 H 0.07 3.03 6.38 -2.39 -0.02 3.01 16 30 H 0.06 2.65 8.10 -2.38 -0.02 2.63 16 31 H -0.02 -1.06 6.62 -2.38 -0.02 -1.07 16 32 H -0.01 -0.50 6.44 -2.39 -0.02 -0.51 16 33 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 34 H 0.04 1.56 6.40 -2.39 -0.02 1.54 16 35 H 0.07 2.09 6.48 -2.39 -0.02 2.08 16 36 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -67.49 274.73 -1.03 -68.52 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.26 Total: 12.29 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 3.73 Total: -22.92 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -7.05 Total: -105.11 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -67.49 -1.03 -68.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307206516.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.706 kcal (2) G-P(sol) polarization free energy of solvation -67.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds