Wall clock time and date at job start Mon Mar 30 2020 02:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.50718 * 2 1 4 4 N 1.46957 * 109.48860 * 120.05269 * 2 1 3 5 5 C 1.46962 * 110.88095 * 60.64421 * 4 2 1 6 6 C 1.53054 * 109.36014 * 59.32435 * 5 4 2 7 7 N 1.46957 * 109.36343 * 301.59607 * 6 5 4 8 8 C 1.46896 * 111.00110 * 183.19162 * 7 6 5 9 9 C 1.53001 * 109.47230 * 46.20247 * 8 7 6 10 10 C 1.50697 * 109.46995 * 180.02562 * 9 8 7 11 11 H 1.07991 * 120.00449 * 359.72153 * 10 9 8 12 12 C 1.37885 * 119.99686 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99913 * 359.72095 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.72528 * 12 10 9 15 15 H 1.48490 * 109.47339 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47239 * 120.00108 * 14 12 10 17 17 H 1.48504 * 109.46636 * 239.99667 * 14 12 10 18 18 C 1.46961 * 110.87855 * 59.32306 * 7 6 5 19 19 H 1.08999 * 109.48874 * 60.64798 * 18 7 6 20 20 C 1.53009 * 109.48778 * 180.71175 * 18 7 6 21 21 H 1.09000 * 109.47185 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46727 * 300.05828 * 1 2 3 23 23 H 1.09002 * 109.46778 * 60.05319 * 1 2 3 24 24 H 1.00904 * 111.00142 * 296.77654 * 4 2 1 25 25 H 1.08998 * 109.48774 * 179.28533 * 5 4 2 26 26 H 1.08991 * 109.48658 * 299.33436 * 5 4 2 27 27 H 1.09000 * 109.48817 * 181.63169 * 6 5 4 28 28 H 1.09002 * 109.49159 * 61.56216 * 6 5 4 29 29 H 1.08998 * 109.47372 * 286.20098 * 8 7 6 30 30 H 1.09006 * 109.47513 * 166.20269 * 8 7 6 31 31 H 1.08998 * 109.47065 * 59.99662 * 9 8 7 32 32 H 1.09001 * 109.46892 * 299.99926 * 9 8 7 33 33 H 0.97000 * 119.99651 * 180.02562 * 13 12 10 34 34 H 1.08996 * 109.46730 * 59.99866 * 20 18 7 35 35 H 1.09000 * 109.46980 * 180.02562 * 20 18 7 36 36 H 1.08999 * 109.46675 * 300.00247 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 7 2.0203 -0.6938 1.1991 5 6 1.5605 -2.0894 1.2216 6 6 2.0712 -2.8121 -0.0272 7 7 1.5809 -2.1183 -1.2264 8 6 1.9877 -2.8262 -2.4475 9 6 1.7156 -4.3229 -2.2840 10 6 2.1336 -5.0492 -3.5365 11 1 2.5473 -4.4980 -4.3678 12 6 1.9830 -6.4171 -3.6230 13 7 1.4796 -7.0885 -2.6103 14 14 2.4939 -7.3164 -5.1784 15 1 3.0264 -6.3401 -6.1624 16 1 3.5447 -8.3134 -4.8513 17 1 1.3162 -8.0107 -5.7583 18 6 2.0407 -0.7226 -1.2487 19 1 3.1303 -0.6989 -1.2626 20 6 1.4985 -0.0266 -2.4988 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5148 0.8895 23 1 -0.3633 0.5130 -0.8905 24 1 1.7408 -0.2075 2.0379 25 1 1.9467 -2.5853 2.1121 26 1 0.4709 -2.1131 1.2358 27 1 1.7072 -3.8395 -0.0272 28 1 3.1612 -2.8120 -0.0272 29 1 3.0518 -2.6673 -2.6222 30 1 1.4193 -2.4442 -3.2955 31 1 0.6515 -4.4818 -2.1093 32 1 2.2841 -4.7050 -1.4360 33 1 1.3740 -8.0509 -2.6711 34 1 0.4089 -0.0498 -2.4838 35 1 1.8401 1.0084 -2.5153 36 1 1.8608 -0.5427 -3.3879 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307206519.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:22 Heat of formation + Delta-G solvation = -0.189671 kcal Electronic energy + Delta-G solvation = -14920.238392 eV Core-core repulsion = 12631.917241 eV Total energy + Delta-G solvation = -2288.321150 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.39771 -35.10662 -33.06408 -32.50011 -29.55245 -27.88600 -26.82390 -24.90899 -23.08012 -21.72823 -20.01768 -18.20778 -16.70249 -16.04482 -15.08066 -14.89633 -14.60518 -14.14895 -13.77138 -13.53586 -12.99367 -12.29079 -12.14391 -12.03604 -11.75704 -11.52432 -11.24902 -11.15158 -10.96881 -10.81047 -10.51573 -10.38298 -10.07951 -9.81495 -9.26171 -9.04970 -8.34388 -8.30517 -7.59577 -5.99744 -4.01632 3.31529 3.38931 3.43148 4.36125 4.40030 4.56040 4.99041 5.29806 5.34283 5.36898 5.50027 5.62846 5.67474 5.73892 5.77382 5.89697 6.00407 6.10330 6.23774 6.27358 6.40701 6.46268 6.52618 6.59771 6.62555 6.98301 7.16220 7.43215 7.60244 7.67025 7.83981 7.88389 8.06928 8.44771 9.05299 9.62068 11.11712 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.050476 B = 0.007197 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.588643 B = 3889.796778 C = 4219.331496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.091 3.909 3 H 0.076 0.924 4 N -0.688 5.688 5 C 0.055 3.945 6 C 0.054 3.946 7 N -0.533 5.533 8 C 0.062 3.938 9 C 0.021 3.979 10 C -0.520 4.520 11 H 0.054 0.946 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.086 3.914 19 H 0.040 0.960 20 C -0.147 4.147 21 H 0.074 0.926 22 H 0.040 0.960 23 H 0.060 0.940 24 H 0.335 0.665 25 H 0.072 0.928 26 H 0.041 0.959 27 H 0.095 0.905 28 H 0.033 0.967 29 H 0.018 0.982 30 H 0.064 0.936 31 H 0.023 0.977 32 H 0.020 0.980 33 H 0.260 0.740 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.761 12.854 5.745 14.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.020 4.020 3 H 0.094 0.906 4 N -0.318 5.318 5 C -0.074 4.074 6 C -0.074 4.074 7 N -0.258 5.258 8 C -0.064 4.064 9 C -0.016 4.016 10 C -0.559 4.559 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.720 3.280 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.023 4.023 19 H 0.058 0.942 20 C -0.205 4.205 21 H 0.093 0.907 22 H 0.060 0.940 23 H 0.079 0.921 24 H 0.152 0.848 25 H 0.090 0.910 26 H 0.059 0.941 27 H 0.113 0.887 28 H 0.052 0.948 29 H 0.036 0.964 30 H 0.082 0.918 31 H 0.042 0.958 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.697 12.521 5.538 13.709 hybrid contribution 0.218 -0.492 -0.628 0.827 sum -0.479 12.029 4.910 13.001 Atomic orbital electron populations 1.22444 0.97110 1.03354 1.00852 1.21596 0.93273 0.96782 0.90312 0.90571 1.60735 1.63297 1.03271 1.04473 1.22082 0.98317 0.88579 0.98409 1.22224 0.97696 0.98794 0.88719 1.62289 1.59522 1.00767 1.03271 1.22326 0.96734 0.97279 0.90073 1.19233 0.97602 0.87687 0.97066 1.21233 1.41489 0.92251 1.00919 0.92736 1.24994 0.95291 0.97706 0.96344 1.69976 1.45256 1.07544 1.30548 0.86539 0.78238 0.79752 0.83499 1.19775 1.21036 1.20995 1.21599 0.96996 0.89867 0.93870 0.94215 1.21916 1.02034 0.99126 0.97398 0.90717 0.94049 0.92092 0.84778 0.90964 0.94057 0.88700 0.94842 0.96358 0.91801 0.95846 0.96211 0.93072 0.91661 0.92923 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 8.44 37.16 0.31 -1.96 16 2 C 0.09 1.21 3.24 -67.66 -0.22 1.00 16 3 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 4 N -0.69 -9.26 6.70 -106.59 -0.71 -9.98 16 5 C 0.06 0.82 6.34 -3.76 -0.02 0.79 16 6 C 0.05 0.99 4.93 -3.76 -0.02 0.97 16 7 N -0.53 -9.93 3.99 -226.48 -0.90 -10.84 16 8 C 0.06 1.35 4.40 -3.83 -0.02 1.34 16 9 C 0.02 0.56 4.24 -27.88 -0.12 0.44 16 10 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 11 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 14 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 C 0.09 1.36 2.22 -67.65 -0.15 1.21 16 19 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 20 C -0.15 -2.06 8.48 37.16 0.32 -1.74 16 21 H 0.07 1.12 5.94 -51.93 -0.31 0.81 16 22 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.74 6.40 -51.93 -0.33 0.41 16 24 H 0.34 3.71 8.89 -39.29 -0.35 3.36 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.04 0.61 6.34 -51.93 -0.33 0.28 16 27 H 0.09 1.93 5.99 -51.93 -0.31 1.62 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.02 0.40 8.08 -51.93 -0.42 -0.02 16 30 H 0.06 1.37 6.86 -51.93 -0.36 1.01 16 31 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.02 0.54 6.26 -51.93 -0.33 0.21 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.06 0.91 6.39 -51.93 -0.33 0.58 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.92 6.59 -51.93 -0.34 0.58 16 LS Contribution 272.47 15.07 4.11 4.11 Total: -1.00 -29.76 272.47 -8.03 -37.80 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -5.91 Total: -0.12 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -0.33 Total: -11.57 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -0.88 Total: -47.00 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.76 -8.03 -37.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307206519.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.606 kcal (2) G-P(sol) polarization free energy of solvation -29.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds