Wall clock time and date at job start Mon Mar 30 2020 02:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.28248 * 2 1 4 4 C 1.54372 * 110.32355 * 237.75879 * 2 1 3 5 5 N 1.48555 * 104.59676 * 264.95329 * 4 2 1 6 6 C 1.46896 * 111.00313 * 200.96148 * 5 4 2 7 7 C 1.48828 * 104.23645 * 320.49593 * 5 4 2 8 8 C 1.54261 * 110.32244 * 122.11925 * 2 1 3 9 9 H 1.09002 * 110.32510 * 0.02562 * 8 2 1 10 10 N 1.46901 * 110.32251 * 237.89752 * 8 2 1 11 11 C 1.46901 * 110.99347 * 189.38892 * 10 8 2 12 12 C 1.46897 * 110.99965 * 65.43440 * 10 8 2 13 13 C 1.50696 * 109.46779 * 189.99401 * 12 10 8 14 14 H 1.07997 * 120.00461 * 0.02562 * 13 12 10 15 15 C 1.37882 * 119.99954 * 179.97438 * 13 12 10 16 16 N 1.31516 * 120.00021 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99757 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.46898 * 90.00102 * 17 15 13 19 19 H 1.48505 * 109.47062 * 209.99685 * 17 15 13 20 20 H 1.48501 * 109.47302 * 329.99883 * 17 15 13 21 21 H 1.08991 * 109.47411 * 297.87726 * 1 2 3 22 22 H 1.09004 * 109.46965 * 57.88001 * 1 2 3 23 23 H 1.09005 * 109.46965 * 177.87736 * 1 2 3 24 24 H 1.09000 * 110.41768 * 23.73677 * 4 2 1 25 25 H 1.09005 * 110.41301 * 146.17840 * 4 2 1 26 26 H 1.08999 * 109.47153 * 60.12599 * 6 5 4 27 27 H 1.09000 * 109.47213 * 180.12634 * 6 5 4 28 28 H 1.09002 * 109.47411 * 300.12874 * 6 5 4 29 29 H 1.08997 * 110.45091 * 280.77395 * 7 5 4 30 30 H 1.09005 * 110.49313 * 158.24598 * 7 5 4 31 31 H 1.08994 * 109.47368 * 65.45714 * 11 10 8 32 32 H 1.09008 * 109.46583 * 185.45385 * 11 10 8 33 33 H 1.08994 * 109.47512 * 305.45433 * 11 10 8 34 34 H 1.08996 * 109.47146 * 309.99775 * 12 10 8 35 35 H 1.09005 * 109.46769 * 69.99998 * 12 10 8 36 36 H 0.97003 * 119.99543 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0662 -0.7723 -1.2244 5 7 2.3148 -2.1474 -0.7202 6 6 3.2650 -2.8610 -1.5838 7 6 2.8823 -1.9414 0.6401 8 6 2.0658 -0.7691 1.2252 9 1 1.2388 -1.1470 1.8263 10 7 2.9295 0.1000 2.0355 11 6 3.6232 -0.6703 3.0764 12 6 2.1612 1.2058 2.6227 13 6 3.1079 2.2046 3.2368 14 1 4.1737 2.0351 3.1948 15 6 2.6134 3.3354 3.8516 16 7 3.4396 4.2073 4.3871 17 14 0.7700 3.6290 3.9237 18 1 0.2196 3.0179 5.1600 19 1 0.5013 5.0895 3.9314 20 1 0.1239 3.0130 2.7369 21 1 -0.3634 0.4805 0.9083 22 1 -0.3633 0.5464 -0.8704 23 1 -0.3633 -1.0270 -0.0381 24 1 1.3214 -0.7880 -2.0201 25 1 2.9942 -0.3243 -1.5800 26 1 4.2122 -2.3220 -1.6051 27 1 3.4274 -3.8655 -1.1931 28 1 2.8607 -2.9250 -2.5940 29 1 3.9374 -1.6753 0.5763 30 1 2.7512 -2.8367 1.2479 31 1 4.3126 -1.3735 2.6094 32 1 4.1795 0.0098 3.7216 33 1 2.8922 -1.2184 3.6707 34 1 1.5733 1.6930 1.8448 35 1 1.4944 0.8166 3.3921 36 1 3.0917 5.0027 4.8199 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307332446.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:56 Heat of formation + Delta-G solvation = 11.404563 kcal Electronic energy + Delta-G solvation = -14964.527761 eV Core-core repulsion = 12676.709374 eV Total energy + Delta-G solvation = -2287.818387 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.29251 -35.82880 -32.79076 -32.29445 -29.23369 -27.27955 -26.64891 -25.45872 -23.26909 -20.96537 -20.43332 -19.12654 -16.92821 -15.82678 -15.48438 -14.71954 -14.13658 -13.87040 -13.67146 -13.23311 -12.95698 -12.73667 -12.42613 -12.32069 -12.05706 -11.48843 -11.36269 -11.27610 -11.00846 -10.69874 -10.58523 -10.46842 -10.31195 -9.91568 -9.80955 -9.24651 -8.57653 -8.38411 -7.38129 -6.05336 -4.02335 3.28097 3.35864 3.38109 4.14198 4.42059 4.84307 4.90147 4.91234 5.27220 5.32518 5.41401 5.50589 5.62259 5.70613 5.80442 5.84175 5.86958 6.01266 6.09099 6.10392 6.18841 6.29378 6.34690 6.45911 6.60064 6.72542 6.88719 6.93097 7.00760 7.11997 7.62907 7.92095 8.07967 8.66535 9.03172 9.56679 11.07803 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041649 B = 0.008779 C = 0.007843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.115714 B = 3188.663123 C = 3569.155639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 H 0.092 0.908 4 C 0.041 3.959 5 N -0.518 5.518 6 C 0.015 3.985 7 C 0.040 3.960 8 C 0.082 3.918 9 H 0.042 0.958 10 N -0.526 5.526 11 C 0.033 3.967 12 C 0.161 3.839 13 C -0.509 4.509 14 H 0.080 0.920 15 C 0.068 3.932 16 N -0.901 5.901 17 Si 0.873 3.127 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.266 1.266 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.045 0.955 26 H 0.028 0.972 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.011 0.989 34 H 0.032 0.968 35 H -0.018 1.018 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.572 -11.366 -9.274 15.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 H 0.111 0.889 4 C -0.087 4.087 5 N -0.242 5.242 6 C -0.134 4.134 7 C -0.088 4.088 8 C -0.028 4.028 9 H 0.060 0.940 10 N -0.251 5.251 11 C -0.115 4.115 12 C 0.035 3.965 13 C -0.547 4.547 14 H 0.098 0.902 15 C -0.133 4.133 16 N -0.540 5.540 17 Si 0.701 3.299 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.190 1.190 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.095 0.905 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.029 0.971 34 H 0.050 0.950 35 H 0.000 1.000 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.694 -11.320 -9.483 15.223 hybrid contribution -0.770 0.383 0.658 1.083 sum -4.465 -10.937 -8.825 14.746 Atomic orbital electron populations 1.21809 0.94918 1.01524 1.01398 1.21951 0.95533 1.00380 0.93295 0.88929 1.23145 0.99817 0.88283 0.97469 1.65417 1.40444 1.15761 1.02562 1.22476 0.94307 0.98984 0.97660 1.23240 0.97862 0.97728 0.90017 1.22402 0.93927 0.92040 0.94432 0.94036 1.62114 1.29564 1.09762 1.23631 1.22273 0.97753 0.97324 0.94167 1.20196 0.93548 0.89444 0.93302 1.21048 0.95110 1.03817 1.34734 0.90172 1.24895 0.97484 0.95841 0.95100 1.69897 1.34393 1.11610 1.38096 0.86885 0.86578 0.77507 0.78959 1.20376 1.21147 1.19048 0.92789 0.92965 0.92464 0.90548 0.93678 0.95331 0.91621 0.91649 0.92498 0.90850 0.93315 0.89965 0.97088 0.95007 1.00025 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.90 37.16 0.33 -1.74 16 2 C -0.09 -1.53 2.68 -89.24 -0.24 -1.77 16 3 H 0.09 1.74 6.91 -51.93 -0.36 1.38 16 4 C 0.04 0.58 6.04 -2.19 -0.01 0.57 16 5 N -0.52 -7.29 5.66 -238.00 -1.35 -8.64 16 6 C 0.01 0.17 9.53 60.06 0.57 0.74 16 7 C 0.04 0.61 4.97 -2.03 -0.01 0.60 16 8 C 0.08 1.45 2.43 -66.33 -0.16 1.29 16 9 H 0.04 0.77 7.71 -51.93 -0.40 0.36 16 10 N -0.53 -11.10 4.52 -234.67 -1.06 -12.16 16 11 C 0.03 0.64 9.00 60.07 0.54 1.18 16 12 C 0.16 3.93 3.59 -4.98 -0.02 3.91 16 13 C -0.51 -14.48 8.93 -34.44 -0.31 -14.78 16 14 H 0.08 2.48 7.42 -52.49 -0.39 2.09 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 17 Si 0.87 21.59 27.47 -169.99 -4.67 16.92 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.08 0.97 7.86 -51.93 -0.41 0.56 16 25 H 0.04 0.65 7.97 -51.93 -0.41 0.24 16 26 H 0.03 0.33 7.98 -51.93 -0.41 -0.09 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.91 7.15 -51.93 -0.37 0.54 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.81 6.83 -51.93 -0.35 0.46 16 32 H 0.08 1.77 6.66 -51.92 -0.35 1.43 16 33 H 0.01 0.20 8.13 -51.93 -0.42 -0.22 16 34 H 0.03 0.78 5.56 -51.93 -0.29 0.49 16 35 H -0.02 -0.44 7.55 -51.93 -0.39 -0.84 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 278.78 15.07 4.20 4.20 Total: -1.00 -29.96 278.78 -7.77 -37.73 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -6.26 Total: -3.06 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 0.60 Total: -8.11 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -1.64 Total: -47.68 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.96 -7.77 -37.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307332446.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.135 kcal (2) G-P(sol) polarization free energy of solvation -29.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds