Wall clock time and date at job start Mon Mar 30 2020 02:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.28248 * 2 1 4 4 C 1.54372 * 110.32355 * 237.75879 * 2 1 3 5 5 N 1.48555 * 104.59676 * 264.95329 * 4 2 1 6 6 C 1.46896 * 111.00313 * 200.96148 * 5 4 2 7 7 C 1.48828 * 104.23645 * 320.49593 * 5 4 2 8 8 C 1.54261 * 110.32244 * 122.11925 * 2 1 3 9 9 H 1.09002 * 110.32510 * 0.02562 * 8 2 1 10 10 N 1.46901 * 110.32251 * 237.89752 * 8 2 1 11 11 C 1.46901 * 110.99347 * 189.38892 * 10 8 2 12 12 C 1.46897 * 110.99965 * 65.43440 * 10 8 2 13 13 C 1.50696 * 109.46779 * 189.99401 * 12 10 8 14 14 H 1.07997 * 120.00461 * 0.02562 * 13 12 10 15 15 C 1.37882 * 119.99954 * 179.97438 * 13 12 10 16 16 N 1.31516 * 120.00021 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99757 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.46898 * 90.00102 * 17 15 13 19 19 H 1.48505 * 109.47062 * 209.99685 * 17 15 13 20 20 H 1.48501 * 109.47302 * 329.99883 * 17 15 13 21 21 H 1.08991 * 109.47411 * 297.87726 * 1 2 3 22 22 H 1.09004 * 109.46965 * 57.88001 * 1 2 3 23 23 H 1.09005 * 109.46965 * 177.87736 * 1 2 3 24 24 H 1.09000 * 110.41768 * 23.73677 * 4 2 1 25 25 H 1.09005 * 110.41301 * 146.17840 * 4 2 1 26 26 H 1.08999 * 109.47153 * 60.12599 * 6 5 4 27 27 H 1.09000 * 109.47213 * 180.12634 * 6 5 4 28 28 H 1.09002 * 109.47411 * 300.12874 * 6 5 4 29 29 H 1.08997 * 110.45091 * 280.77395 * 7 5 4 30 30 H 1.09005 * 110.49313 * 158.24598 * 7 5 4 31 31 H 1.08994 * 109.47368 * 65.45714 * 11 10 8 32 32 H 1.09008 * 109.46583 * 185.45385 * 11 10 8 33 33 H 1.08994 * 109.47512 * 305.45433 * 11 10 8 34 34 H 1.08996 * 109.47146 * 309.99775 * 12 10 8 35 35 H 1.09005 * 109.46769 * 69.99998 * 12 10 8 36 36 H 0.97003 * 119.99543 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0662 -0.7723 -1.2244 5 7 2.3148 -2.1474 -0.7202 6 6 3.2650 -2.8610 -1.5838 7 6 2.8823 -1.9414 0.6401 8 6 2.0658 -0.7691 1.2252 9 1 1.2388 -1.1470 1.8263 10 7 2.9295 0.1000 2.0355 11 6 3.6232 -0.6703 3.0764 12 6 2.1612 1.2058 2.6227 13 6 3.1079 2.2046 3.2368 14 1 4.1737 2.0351 3.1948 15 6 2.6134 3.3354 3.8516 16 7 3.4396 4.2073 4.3871 17 14 0.7700 3.6290 3.9237 18 1 0.2196 3.0179 5.1600 19 1 0.5013 5.0895 3.9314 20 1 0.1239 3.0130 2.7369 21 1 -0.3634 0.4805 0.9083 22 1 -0.3633 0.5464 -0.8704 23 1 -0.3633 -1.0270 -0.0381 24 1 1.3214 -0.7880 -2.0201 25 1 2.9942 -0.3243 -1.5800 26 1 4.2122 -2.3220 -1.6051 27 1 3.4274 -3.8655 -1.1931 28 1 2.8607 -2.9250 -2.5940 29 1 3.9374 -1.6753 0.5763 30 1 2.7512 -2.8367 1.2479 31 1 4.3126 -1.3735 2.6094 32 1 4.1795 0.0098 3.7216 33 1 2.8922 -1.2184 3.6707 34 1 1.5733 1.6930 1.8448 35 1 1.4944 0.8166 3.3921 36 1 3.0917 5.0027 4.8199 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307332446.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:55 Heat of formation + Delta-G solvation = -10.974864 kcal Electronic energy + Delta-G solvation = -14965.498205 eV Core-core repulsion = 12676.709374 eV Total energy + Delta-G solvation = -2288.788831 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.59375 -37.36726 -34.66042 -33.79490 -30.87563 -28.90534 -27.75155 -27.01283 -24.70506 -22.68869 -21.69387 -20.55784 -19.02485 -17.27394 -16.74498 -16.47975 -15.67603 -15.45108 -14.99474 -14.55211 -14.44645 -14.24213 -14.04211 -13.68549 -13.36080 -13.08189 -12.92089 -12.57333 -12.48859 -12.31745 -12.06274 -11.80397 -11.75734 -11.66565 -11.40300 -11.33280 -10.80087 -9.48261 -9.06011 -8.29803 -6.32741 1.32547 1.34199 1.45337 2.32829 2.93016 3.04219 3.42551 3.66270 3.70031 4.10501 4.29585 4.41860 4.47896 4.50602 4.57928 4.61126 4.65140 4.73004 4.79961 4.87402 4.97343 4.97942 5.03297 5.06231 5.12209 5.19441 5.24540 5.36354 5.56043 5.75890 5.99869 6.07142 6.36725 6.66077 6.73458 7.30800 8.86787 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041649 B = 0.008779 C = 0.007843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.115714 B = 3188.663123 C = 3569.155639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.097 4.097 3 H 0.064 0.936 4 C 0.047 3.953 5 N -0.520 5.520 6 C 0.014 3.986 7 C 0.047 3.953 8 C 0.078 3.922 9 H 0.039 0.961 10 N -0.541 5.541 11 C 0.038 3.962 12 C 0.175 3.825 13 C -0.516 4.516 14 H 0.038 0.962 15 C 0.009 3.991 16 N -0.947 5.947 17 Si 0.943 3.057 18 H -0.269 1.269 19 H -0.279 1.279 20 H -0.248 1.248 21 H 0.037 0.963 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.097 0.903 25 H 0.040 0.960 26 H 0.025 0.975 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.021 0.979 34 H 0.033 0.967 35 H -0.020 1.020 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.365 -12.952 -10.669 17.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.116 4.116 3 H 0.082 0.918 4 C -0.081 4.081 5 N -0.244 5.244 6 C -0.135 4.135 7 C -0.081 4.081 8 C -0.031 4.031 9 H 0.057 0.943 10 N -0.266 5.266 11 C -0.110 4.110 12 C 0.048 3.952 13 C -0.554 4.554 14 H 0.056 0.944 15 C -0.188 4.188 16 N -0.588 5.588 17 Si 0.766 3.234 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.172 1.172 21 H 0.056 0.944 22 H 0.089 0.911 23 H 0.086 0.914 24 H 0.116 0.884 25 H 0.058 0.942 26 H 0.044 0.956 27 H 0.097 0.903 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.040 0.960 34 H 0.051 0.949 35 H -0.002 1.002 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.481 -12.935 -10.896 17.778 hybrid contribution -0.096 0.835 1.069 1.359 sum -5.576 -12.100 -9.827 16.555 Atomic orbital electron populations 1.21758 0.93461 1.02336 1.01454 1.21963 0.96794 0.98963 0.93904 0.91773 1.23109 1.00066 0.88086 0.96820 1.65456 1.41179 1.15498 1.02226 1.22565 0.93662 0.99138 0.98113 1.23145 0.96846 0.97023 0.91067 1.22522 0.93760 0.92553 0.94308 0.94309 1.62029 1.30120 1.10401 1.24045 1.22218 0.98086 0.96880 0.93851 1.19898 0.92610 0.89758 0.92915 1.21272 0.94012 1.05146 1.35011 0.94356 1.25815 1.02938 0.95452 0.94593 1.70047 1.36968 1.12431 1.39353 0.85780 0.80012 0.77763 0.79852 1.19400 1.20491 1.17164 0.94402 0.91112 0.91351 0.88440 0.94201 0.95635 0.90330 0.89934 0.93364 0.89494 0.90481 0.93176 0.96020 0.94893 1.00231 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.62 8.90 71.98 0.64 -2.98 16 2 C -0.10 -3.05 2.68 -9.90 -0.03 -3.08 16 3 H 0.06 2.38 6.91 -2.39 -0.02 2.37 16 4 C 0.05 1.22 6.04 86.45 0.52 1.74 16 5 N -0.52 -13.05 5.66 -906.91 -5.14 -18.19 16 6 C 0.01 0.27 9.53 127.69 1.22 1.48 16 7 C 0.05 1.34 4.97 86.40 0.43 1.77 16 8 C 0.08 2.65 2.43 45.81 0.11 2.76 16 9 H 0.04 1.36 7.71 -2.39 -0.02 1.34 16 10 N -0.54 -22.80 4.52 -896.35 -4.05 -26.85 16 11 C 0.04 1.46 9.00 127.69 1.15 2.61 16 12 C 0.18 8.56 3.59 85.56 0.31 8.87 16 13 C -0.52 -30.27 8.93 25.60 0.23 -30.04 16 14 H 0.04 2.50 7.42 -2.91 -0.02 2.48 16 15 C 0.01 0.55 5.47 84.66 0.46 1.02 16 16 N -0.95 -59.72 13.96 21.45 0.30 -59.42 16 17 Si 0.94 44.50 27.47 68.60 1.88 46.38 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 21 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 23 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 24 H 0.10 2.13 7.86 -2.39 -0.02 2.11 16 25 H 0.04 1.07 7.97 -2.38 -0.02 1.05 16 26 H 0.02 0.52 7.98 -2.39 -0.02 0.50 16 27 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.05 1.45 7.15 -2.39 -0.02 1.43 16 30 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 31 H 0.08 2.50 6.83 -2.39 -0.02 2.48 16 32 H 0.05 2.23 6.66 -2.38 -0.02 2.22 16 33 H 0.02 0.77 8.13 -2.39 -0.02 0.75 16 34 H 0.03 1.60 5.56 -2.39 -0.01 1.59 16 35 H -0.02 -0.98 7.55 -2.38 -0.02 -0.99 16 36 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -65.34 278.78 -1.00 -66.34 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 0.96 Total: 7.59 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: 5.04 Total: -15.85 kcal Atomic # 7 Polarization: -95.58 SS G_CDS: -8.89 Total: -104.47 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.38 kcal Total: -65.34 -1.00 -66.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307332446.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.363 kcal (2) G-P(sol) polarization free energy of solvation -65.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds