Wall clock time and date at job start Mon Mar 30 2020 02:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.36623 * 2 1 4 4 C 1.54381 * 110.32715 * 122.18708 * 2 1 3 5 5 N 1.48560 * 104.59518 * 142.74673 * 4 2 1 6 6 C 1.46903 * 110.99817 * 200.95851 * 5 4 2 7 7 C 1.48560 * 104.22366 * 320.51540 * 5 4 2 8 8 C 1.54267 * 110.32253 * 237.82416 * 2 1 3 9 9 H 1.09002 * 110.40859 * 122.16312 * 8 2 1 10 10 N 1.46902 * 110.32276 * 359.97438 * 8 2 1 11 11 C 1.46898 * 110.99646 * 157.31260 * 10 8 2 12 12 C 1.46903 * 110.99880 * 281.26386 * 10 8 2 13 13 C 1.50693 * 109.47025 * 161.83474 * 12 10 8 14 14 H 1.07995 * 119.99993 * 359.97438 * 13 12 10 15 15 C 1.37878 * 119.99967 * 180.02562 * 13 12 10 16 16 N 1.31514 * 120.00008 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99992 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47535 * 179.97438 * 17 15 13 19 19 H 1.48497 * 109.47559 * 300.00244 * 17 15 13 20 20 H 1.48507 * 109.47238 * 60.00077 * 17 15 13 21 21 H 1.09008 * 109.47186 * 179.83734 * 1 2 3 22 22 H 1.09002 * 109.47192 * 299.83424 * 1 2 3 23 23 H 1.09000 * 109.47264 * 59.83508 * 1 2 3 24 24 H 1.09003 * 110.40640 * 23.96830 * 4 2 1 25 25 H 1.08998 * 110.41050 * 261.52710 * 4 2 1 26 26 H 1.09001 * 109.46615 * 175.42303 * 6 5 4 27 27 H 1.09006 * 109.46932 * 295.41928 * 6 5 4 28 28 H 1.09003 * 109.46967 * 55.42248 * 6 5 4 29 29 H 1.08993 * 110.41372 * 280.70741 * 7 5 4 30 30 H 1.09004 * 110.50781 * 158.31210 * 7 5 4 31 31 H 1.09003 * 109.46834 * 188.92558 * 11 10 8 32 32 H 1.08994 * 109.47471 * 308.92299 * 11 10 8 33 33 H 1.09002 * 109.47184 * 68.92625 * 11 10 8 34 34 H 1.08996 * 109.47190 * 41.83335 * 12 10 8 35 35 H 1.09003 * 109.47227 * 281.83207 * 12 10 8 36 36 H 0.97003 * 119.99828 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0218 0.0000 4 6 2.0663 -0.7712 1.2252 5 7 3.2694 -1.4829 0.7223 6 6 3.6069 -2.6218 1.5866 7 6 2.8806 -1.9422 -0.6360 8 6 2.0658 -0.7704 -1.2245 9 1 2.7077 -0.1276 -1.8268 10 7 0.9511 -1.2804 -2.0341 11 6 1.3757 -1.5266 -3.4186 12 6 0.3778 -2.4934 -1.4357 13 6 -0.9962 -2.7337 -2.0061 14 1 -1.4030 -2.0532 -2.7394 15 6 -1.7344 -3.8217 -1.5910 16 7 -1.2396 -4.6495 -0.6968 17 14 -3.4378 -4.1192 -2.2975 18 1 -4.0174 -5.3454 -1.6928 19 1 -4.3100 -2.9566 -1.9930 20 1 -3.3400 -4.2924 -3.7692 21 1 -0.3634 -1.0277 -0.0029 22 1 -0.3634 0.5113 0.8915 23 1 -0.3634 0.5164 -0.8885 24 1 1.3229 -1.4850 1.5802 25 1 2.3395 -0.0781 2.0208 26 1 4.4408 -3.1730 1.1520 27 1 3.8878 -2.2573 2.5747 28 1 2.7425 -3.2801 1.6742 29 1 2.2648 -2.8392 -0.5723 30 1 3.7660 -2.1321 -1.2429 31 1 0.5029 -1.7504 -4.0319 32 1 1.8759 -0.6401 -3.8084 33 1 2.0634 -2.3720 -3.4429 34 1 0.3056 -2.3665 -0.3555 35 1 1.0183 -3.3466 -1.6593 36 1 -1.7588 -5.4152 -0.4051 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307332483.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:01 Heat of formation + Delta-G solvation = 23.796905 kcal Electronic energy + Delta-G solvation = -15346.110613 eV Core-core repulsion = 13058.829599 eV Total energy + Delta-G solvation = -2287.281014 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.40878 -35.48484 -32.66037 -32.05279 -28.60887 -27.40154 -26.38218 -24.43014 -23.70315 -21.70680 -20.13424 -18.45513 -16.53505 -15.81004 -15.05105 -14.59266 -14.19764 -13.87085 -13.46392 -13.25850 -12.78042 -12.17918 -12.11362 -11.89822 -11.60202 -11.22574 -11.08311 -10.93374 -10.88835 -10.76518 -10.49631 -10.39117 -10.00854 -9.68724 -9.65461 -9.15296 -8.40086 -8.08165 -7.19214 -6.04104 -4.05196 3.32352 3.36524 3.39570 4.37117 4.46184 5.01471 5.13735 5.26145 5.31480 5.56827 5.70103 5.80011 5.81706 5.97504 6.06359 6.11782 6.13584 6.25133 6.28034 6.37317 6.45334 6.47292 6.69173 6.74010 6.91388 7.12701 7.14223 7.30310 7.36951 7.55795 7.82119 8.11674 8.20473 8.55199 9.03121 9.59318 11.06144 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033451 B = 0.009988 C = 0.009336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.835106 B = 2802.719564 C = 2998.397856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.081 4.081 3 H 0.067 0.933 4 C 0.034 3.966 5 N -0.517 5.517 6 C 0.013 3.987 7 C -0.010 4.010 8 C 0.083 3.917 9 H 0.072 0.928 10 N -0.528 5.528 11 C 0.038 3.962 12 C 0.189 3.811 13 C -0.504 4.504 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.901 5.901 17 Si 0.896 3.104 18 H -0.289 1.289 19 H -0.276 1.276 20 H -0.278 1.278 21 H 0.090 0.910 22 H 0.028 0.972 23 H 0.062 0.938 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.032 0.968 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.012 0.988 34 H 0.039 0.961 35 H -0.009 1.009 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.465 5.718 1.689 8.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 H 0.086 0.914 4 C -0.094 4.094 5 N -0.240 5.240 6 C -0.136 4.136 7 C -0.140 4.140 8 C -0.027 4.027 9 H 0.091 0.909 10 N -0.251 5.251 11 C -0.111 4.111 12 C 0.064 3.936 13 C -0.542 4.542 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.540 5.540 17 Si 0.724 3.276 18 H -0.214 1.214 19 H -0.201 1.201 20 H -0.203 1.203 21 H 0.108 0.892 22 H 0.047 0.953 23 H 0.081 0.919 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.030 0.970 34 H 0.057 0.943 35 H 0.009 0.991 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.525 6.243 1.766 9.202 hybrid contribution -0.871 -1.553 -0.232 1.796 sum 5.654 4.690 1.535 7.505 Atomic orbital electron populations 1.21910 0.93141 1.05010 0.99704 1.21828 0.97318 0.97937 0.93021 0.91434 1.23250 0.91115 0.97422 0.97633 1.65332 1.33461 1.22619 1.02629 1.22479 1.00530 0.93157 0.97421 1.24036 0.99312 1.00134 0.90470 1.22449 0.91081 0.94724 0.94486 0.90943 1.62363 1.26855 1.34707 1.01188 1.22229 0.99552 0.97856 0.91455 1.19941 0.93995 0.84164 0.95459 1.21142 1.00195 1.09003 1.23894 0.91957 1.24975 0.98327 0.96004 0.95279 1.69939 1.37937 1.14901 1.31261 0.86588 0.84320 0.77463 0.79204 1.21449 1.20150 1.20339 0.89182 0.95276 0.91917 0.93303 0.91051 0.91884 0.91841 0.94909 0.90925 0.91510 0.91201 0.93632 0.96964 0.94306 0.99099 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 8.01 37.16 0.30 -2.35 16 2 C -0.08 -1.42 3.46 -89.23 -0.31 -1.73 16 3 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 4 C 0.03 0.57 5.87 -2.18 -0.01 0.56 16 5 N -0.52 -8.81 5.66 -238.22 -1.35 -10.16 16 6 C 0.01 0.20 9.53 60.07 0.57 0.78 16 7 C -0.01 -0.19 5.69 -2.18 -0.01 -0.20 16 8 C 0.08 1.53 3.07 -66.32 -0.20 1.33 16 9 H 0.07 1.25 7.71 -51.93 -0.40 0.85 16 10 N -0.53 -11.11 3.43 -234.66 -0.80 -11.92 16 11 C 0.04 0.72 9.33 60.06 0.56 1.28 16 12 C 0.19 4.71 2.11 -4.98 -0.01 4.70 16 13 C -0.50 -13.77 8.58 -34.44 -0.30 -14.07 16 14 H 0.06 1.70 7.64 -52.49 -0.40 1.30 16 15 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 16 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 17 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H 0.09 2.04 4.47 -51.92 -0.23 1.81 16 22 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 24 H 0.05 0.91 7.46 -51.93 -0.39 0.52 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.03 0.55 7.97 -51.93 -0.41 0.13 16 29 H 0.07 1.57 4.82 -51.93 -0.25 1.32 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.40 7.58 -51.93 -0.39 1.01 16 32 H 0.04 0.74 7.85 -51.93 -0.41 0.34 16 33 H 0.01 0.23 7.99 -51.93 -0.42 -0.19 16 34 H 0.04 1.03 4.91 -51.93 -0.26 0.78 16 35 H -0.01 -0.23 6.72 -51.93 -0.35 -0.58 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 274.56 15.07 4.14 4.14 Total: -1.00 -28.25 274.56 -7.80 -36.05 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -5.99 Total: -0.79 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: 0.49 Total: -8.26 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: -1.42 Total: -47.59 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.25 -7.80 -36.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307332483.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.849 kcal (2) G-P(sol) polarization free energy of solvation -28.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds