Wall clock time and date at job start Mon Mar 30 2020 02:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.36623 * 2 1 4 4 C 1.54381 * 110.32715 * 122.18708 * 2 1 3 5 5 N 1.48560 * 104.59518 * 142.74673 * 4 2 1 6 6 C 1.46903 * 110.99817 * 200.95851 * 5 4 2 7 7 C 1.48560 * 104.22366 * 320.51540 * 5 4 2 8 8 C 1.54267 * 110.32253 * 237.82416 * 2 1 3 9 9 H 1.09002 * 110.40859 * 122.16312 * 8 2 1 10 10 N 1.46902 * 110.32276 * 359.97438 * 8 2 1 11 11 C 1.46898 * 110.99646 * 157.31260 * 10 8 2 12 12 C 1.46903 * 110.99880 * 281.26386 * 10 8 2 13 13 C 1.50693 * 109.47025 * 161.83474 * 12 10 8 14 14 H 1.07995 * 119.99993 * 359.97438 * 13 12 10 15 15 C 1.37878 * 119.99967 * 180.02562 * 13 12 10 16 16 N 1.31514 * 120.00008 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99992 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47535 * 179.97438 * 17 15 13 19 19 H 1.48497 * 109.47559 * 300.00244 * 17 15 13 20 20 H 1.48507 * 109.47238 * 60.00077 * 17 15 13 21 21 H 1.09008 * 109.47186 * 179.83734 * 1 2 3 22 22 H 1.09002 * 109.47192 * 299.83424 * 1 2 3 23 23 H 1.09000 * 109.47264 * 59.83508 * 1 2 3 24 24 H 1.09003 * 110.40640 * 23.96830 * 4 2 1 25 25 H 1.08998 * 110.41050 * 261.52710 * 4 2 1 26 26 H 1.09001 * 109.46615 * 175.42303 * 6 5 4 27 27 H 1.09006 * 109.46932 * 295.41928 * 6 5 4 28 28 H 1.09003 * 109.46967 * 55.42248 * 6 5 4 29 29 H 1.08993 * 110.41372 * 280.70741 * 7 5 4 30 30 H 1.09004 * 110.50781 * 158.31210 * 7 5 4 31 31 H 1.09003 * 109.46834 * 188.92558 * 11 10 8 32 32 H 1.08994 * 109.47471 * 308.92299 * 11 10 8 33 33 H 1.09002 * 109.47184 * 68.92625 * 11 10 8 34 34 H 1.08996 * 109.47190 * 41.83335 * 12 10 8 35 35 H 1.09003 * 109.47227 * 281.83207 * 12 10 8 36 36 H 0.97003 * 119.99828 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0218 0.0000 4 6 2.0663 -0.7712 1.2252 5 7 3.2694 -1.4829 0.7223 6 6 3.6069 -2.6218 1.5866 7 6 2.8806 -1.9422 -0.6360 8 6 2.0658 -0.7704 -1.2245 9 1 2.7077 -0.1276 -1.8268 10 7 0.9511 -1.2804 -2.0341 11 6 1.3757 -1.5266 -3.4186 12 6 0.3778 -2.4934 -1.4357 13 6 -0.9962 -2.7337 -2.0061 14 1 -1.4030 -2.0532 -2.7394 15 6 -1.7344 -3.8217 -1.5910 16 7 -1.2396 -4.6495 -0.6968 17 14 -3.4378 -4.1192 -2.2975 18 1 -4.0174 -5.3454 -1.6928 19 1 -4.3100 -2.9566 -1.9930 20 1 -3.3400 -4.2924 -3.7692 21 1 -0.3634 -1.0277 -0.0029 22 1 -0.3634 0.5113 0.8915 23 1 -0.3634 0.5164 -0.8885 24 1 1.3229 -1.4850 1.5802 25 1 2.3395 -0.0781 2.0208 26 1 4.4408 -3.1730 1.1520 27 1 3.8878 -2.2573 2.5747 28 1 2.7425 -3.2801 1.6742 29 1 2.2648 -2.8392 -0.5723 30 1 3.7660 -2.1321 -1.2429 31 1 0.5029 -1.7504 -4.0319 32 1 1.8759 -0.6401 -3.8084 33 1 2.0634 -2.3720 -3.4429 34 1 0.3056 -2.3665 -0.3555 35 1 1.0183 -3.3466 -1.6593 36 1 -1.7588 -5.4152 -0.4051 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307332483.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:01 Heat of formation + Delta-G solvation = 4.206990 kcal Electronic energy + Delta-G solvation = -15346.960096 eV Core-core repulsion = 13058.829599 eV Total energy + Delta-G solvation = -2288.130497 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.91271 -37.08595 -34.67039 -33.58170 -30.25238 -29.20375 -27.81396 -26.07979 -25.43908 -23.29458 -21.68495 -20.00543 -18.56212 -17.35461 -16.68573 -16.42170 -15.75866 -15.44523 -15.06704 -14.81943 -14.25785 -13.97574 -13.71137 -13.47391 -13.17017 -12.87523 -12.84226 -12.59117 -12.38054 -12.34837 -12.22666 -12.03786 -11.60957 -11.49777 -11.24570 -11.03309 -10.51821 -9.53142 -8.92912 -8.18055 -6.27189 1.40086 1.42312 1.50024 2.40187 3.00365 3.14350 3.45720 3.73336 3.83606 4.16745 4.28472 4.39215 4.51562 4.53054 4.62396 4.67361 4.74594 4.82838 4.86914 4.90515 4.97139 4.97827 5.12389 5.23614 5.27183 5.30772 5.45926 5.67252 5.71839 5.89881 5.99613 6.13001 6.41101 6.69794 6.89776 7.42333 8.91505 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033451 B = 0.009988 C = 0.009336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.835106 B = 2802.719564 C = 2998.397856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.080 4.080 3 H 0.097 0.903 4 C 0.036 3.964 5 N -0.510 5.510 6 C 0.014 3.986 7 C -0.004 4.004 8 C 0.078 3.922 9 H 0.097 0.903 10 N -0.533 5.533 11 C 0.039 3.961 12 C 0.216 3.784 13 C -0.516 4.516 14 H 0.059 0.941 15 C 0.003 3.997 16 N -0.935 5.935 17 Si 0.961 3.039 18 H -0.286 1.286 19 H -0.268 1.268 20 H -0.269 1.269 21 H 0.047 0.953 22 H 0.048 0.952 23 H 0.055 0.945 24 H 0.021 0.979 25 H 0.100 0.900 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.008 0.992 29 H 0.033 0.967 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.007 0.993 34 H 0.020 0.980 35 H -0.044 1.044 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.981 7.346 1.502 10.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.099 4.099 3 H 0.115 0.885 4 C -0.092 4.092 5 N -0.234 5.234 6 C -0.135 4.135 7 C -0.134 4.134 8 C -0.031 4.031 9 H 0.115 0.885 10 N -0.256 5.256 11 C -0.110 4.110 12 C 0.090 3.910 13 C -0.555 4.555 14 H 0.077 0.923 15 C -0.194 4.194 16 N -0.576 5.576 17 Si 0.787 3.213 18 H -0.211 1.211 19 H -0.193 1.193 20 H -0.195 1.195 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.074 0.926 24 H 0.040 0.960 25 H 0.118 0.882 26 H 0.093 0.907 27 H 0.107 0.893 28 H 0.026 0.974 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.025 0.975 34 H 0.037 0.963 35 H -0.026 1.026 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.052 7.888 1.572 10.697 hybrid contribution -0.978 -2.033 -0.155 2.262 sum 6.074 5.854 1.417 8.554 Atomic orbital electron populations 1.21736 0.94491 1.02254 1.00331 1.21883 0.96087 0.99334 0.92583 0.88489 1.23270 0.90469 0.97224 0.98233 1.65397 1.32959 1.22945 1.02077 1.22545 0.99880 0.92513 0.98590 1.23898 0.99068 0.98570 0.91883 1.22625 0.90565 0.94916 0.95016 0.88500 1.62281 1.28611 1.32416 1.02249 1.22257 0.99087 0.99388 0.90234 1.19482 0.92667 0.84533 0.94310 1.21467 1.01396 1.08946 1.23677 0.92258 1.25822 1.02269 0.95787 0.95566 1.70073 1.39496 1.15442 1.32595 0.85553 0.79584 0.77483 0.78721 1.21114 1.19338 1.19454 0.93441 0.93290 0.92594 0.96040 0.88196 0.90700 0.89274 0.97352 0.94913 0.90362 0.92666 0.90013 0.97457 0.96264 1.02628 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.85 8.01 71.98 0.58 -4.27 16 2 C -0.08 -2.61 3.46 -9.90 -0.03 -2.64 16 3 H 0.10 2.67 8.14 -2.39 -0.02 2.66 16 4 C 0.04 1.17 5.87 86.45 0.51 1.67 16 5 N -0.51 -16.65 5.66 -907.59 -5.14 -21.79 16 6 C 0.01 0.40 9.53 127.69 1.22 1.62 16 7 C 0.00 -0.16 5.69 86.45 0.49 0.33 16 8 C 0.08 2.79 3.07 45.81 0.14 2.93 16 9 H 0.10 3.00 7.71 -2.39 -0.02 2.99 16 10 N -0.53 -22.37 3.43 -896.32 -3.07 -25.44 16 11 C 0.04 1.45 9.33 127.69 1.19 2.64 16 12 C 0.22 11.17 2.11 85.55 0.18 11.35 16 13 C -0.52 -28.94 8.58 25.60 0.22 -28.72 16 14 H 0.06 3.28 7.64 -2.91 -0.02 3.26 16 15 C 0.00 0.18 5.46 84.65 0.46 0.65 16 16 N -0.94 -56.22 13.29 21.45 0.28 -55.94 16 17 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 18 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H 0.05 2.19 4.47 -2.38 -0.01 2.18 16 22 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16 24 H 0.02 0.81 7.46 -2.39 -0.02 0.79 16 25 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 26 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 28 H 0.01 0.27 7.97 -2.39 -0.02 0.25 16 29 H 0.03 1.48 4.82 -2.39 -0.01 1.47 16 30 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16 31 H 0.05 2.21 7.58 -2.39 -0.02 2.19 16 32 H 0.08 2.46 7.85 -2.39 -0.02 2.44 16 33 H 0.01 0.26 7.99 -2.39 -0.02 0.25 16 34 H 0.02 1.09 4.91 -2.39 -0.01 1.08 16 35 H -0.04 -2.53 6.72 -2.39 -0.02 -2.55 16 36 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -61.84 274.56 0.09 -61.75 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 1.03 Total: 9.40 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: 4.95 Total: -14.46 kcal Atomic # 7 Polarization: -95.25 SS G_CDS: -7.92 Total: -103.17 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -61.84 0.09 -61.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307332483.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.957 kcal (2) G-P(sol) polarization free energy of solvation -61.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds