Wall clock time and date at job start Mon Mar 30 2020 02:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.29066 * 2 1 4 4 C 1.54380 * 110.32150 * 237.87278 * 2 1 3 5 5 N 1.48721 * 104.51610 * 217.32146 * 4 2 1 6 6 C 1.46898 * 111.01411 * 158.97108 * 5 4 2 7 7 C 1.48559 * 104.28929 * 39.36138 * 5 4 2 8 8 C 1.54258 * 110.32623 * 122.12718 * 2 1 3 9 9 H 1.09000 * 110.32541 * 237.79442 * 8 2 1 10 10 N 1.46906 * 110.32338 * 359.97438 * 8 2 1 11 11 C 1.46896 * 110.99845 * 153.95871 * 10 8 2 12 12 C 1.46903 * 110.99967 * 277.91713 * 10 8 2 13 13 C 1.50695 * 109.46906 * 169.99849 * 12 10 8 14 14 H 1.07995 * 120.00564 * 359.97438 * 13 12 10 15 15 C 1.37878 * 119.99678 * 180.02562 * 13 12 10 16 16 N 1.31512 * 120.00128 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00207 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46690 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47251 * 119.99589 * 17 15 13 20 20 H 1.48498 * 109.47344 * 239.99862 * 17 15 13 21 21 H 1.08997 * 109.46798 * 295.29373 * 1 2 3 22 22 H 1.08999 * 109.46966 * 175.29060 * 1 2 3 23 23 H 1.08997 * 109.46690 * 55.28862 * 1 2 3 24 24 H 1.08994 * 110.41538 * 336.03131 * 4 2 1 25 25 H 1.08997 * 110.41025 * 98.47589 * 4 2 1 26 26 H 1.09001 * 109.47088 * 304.48928 * 6 5 4 27 27 H 1.09001 * 109.47722 * 64.48839 * 6 5 4 28 28 H 1.09007 * 109.46733 * 184.49162 * 6 5 4 29 29 H 1.08991 * 110.41140 * 201.79133 * 7 5 4 30 30 H 1.09004 * 110.50595 * 79.40348 * 7 5 4 31 31 H 1.08994 * 109.47347 * 64.61112 * 11 10 8 32 32 H 1.09005 * 109.46811 * 184.60783 * 11 10 8 33 33 H 1.08996 * 109.47492 * 304.60137 * 11 10 8 34 34 H 1.09003 * 109.46586 * 289.99830 * 12 10 8 35 35 H 1.08997 * 109.47011 * 49.99746 * 12 10 8 36 36 H 0.96998 * 120.00498 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0662 -0.7699 -1.2260 5 7 3.2693 -1.4836 -0.7211 6 6 3.6068 -2.6232 -1.5844 7 6 2.8807 -1.9416 0.6376 8 6 2.0659 -0.7693 1.2250 9 1 2.7082 -0.1250 1.8254 10 7 0.9513 -1.2777 2.0358 11 6 1.3543 -2.4671 2.7978 12 6 0.4294 -0.2331 2.9272 13 6 -0.8546 -0.7067 3.5581 14 1 -1.2442 -1.6855 3.3204 15 6 -1.5325 0.1101 4.4381 16 7 -1.0583 1.3022 4.7272 17 14 -3.1237 -0.4771 5.2208 18 1 -3.4393 -1.8443 4.7346 19 1 -2.9700 -0.4996 6.6977 20 1 -4.2269 0.4459 4.8520 21 1 -0.3633 0.4391 0.9291 22 1 -0.3633 -1.0242 -0.0844 23 1 -0.3632 0.5852 -0.8448 24 1 1.3229 -1.4833 -1.5818 25 1 2.3394 -0.0760 -2.0209 26 1 2.7424 -3.2815 -1.6715 27 1 3.8876 -2.2597 -2.5729 28 1 4.4407 -3.1741 -1.1494 29 1 3.7671 -2.1297 1.2433 30 1 2.2654 -2.8393 0.5765 31 1 2.1243 -2.1930 3.5189 32 1 0.4900 -2.8708 3.3252 33 1 1.7475 -3.2201 2.1149 34 1 1.1612 -0.0220 3.7069 35 1 0.2391 0.6732 2.3524 36 1 -1.5350 1.8767 5.3465 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307332498.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:04 Heat of formation + Delta-G solvation = 21.197963 kcal Electronic energy + Delta-G solvation = -15036.304301 eV Core-core repulsion = 12748.910588 eV Total energy + Delta-G solvation = -2287.393713 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.27899 -35.72846 -32.67795 -32.17251 -29.07513 -26.73810 -26.53298 -25.15461 -23.47968 -21.13660 -20.61312 -18.54356 -16.43147 -15.96640 -15.28266 -14.72423 -14.43730 -13.91071 -13.68505 -13.26085 -12.91480 -12.17236 -11.94885 -11.76993 -11.67642 -11.44823 -11.32920 -11.15844 -10.87990 -10.78717 -10.40872 -10.28847 -10.02087 -9.97440 -9.63273 -9.08046 -8.39933 -8.32298 -7.17698 -6.02259 -4.03274 3.30812 3.38460 3.42957 4.19196 4.44243 4.98407 5.02592 5.06350 5.33673 5.42113 5.50404 5.55755 5.67794 5.85580 5.86968 5.93146 6.09689 6.12797 6.23403 6.26938 6.34166 6.48349 6.63769 6.77193 6.88143 6.97949 7.10746 7.20028 7.37234 7.53345 7.82799 8.12460 8.22337 8.57275 9.05179 9.60976 11.08578 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.053273 B = 0.007730 C = 0.007371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.465566 B = 3621.277719 C = 3797.603069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.083 4.083 3 H 0.068 0.932 4 C 0.040 3.960 5 N -0.521 5.521 6 C 0.016 3.984 7 C 0.034 3.966 8 C 0.080 3.920 9 H 0.044 0.956 10 N -0.529 5.529 11 C 0.031 3.969 12 C 0.188 3.812 13 C -0.504 4.504 14 H 0.063 0.937 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.896 3.104 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 H 0.088 0.912 22 H 0.058 0.942 23 H 0.029 0.971 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.026 0.974 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.011 0.989 32 H 0.072 0.928 33 H 0.048 0.952 34 H -0.012 1.012 35 H 0.041 0.959 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.225 -5.432 -9.420 12.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 H 0.087 0.913 4 C -0.088 4.088 5 N -0.245 5.245 6 C -0.133 4.133 7 C -0.094 4.094 8 C -0.029 4.029 9 H 0.062 0.938 10 N -0.254 5.254 11 C -0.117 4.117 12 C 0.064 3.936 13 C -0.543 4.543 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.724 3.276 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.210 1.210 21 H 0.106 0.894 22 H 0.077 0.923 23 H 0.048 0.952 24 H 0.063 0.937 25 H 0.091 0.909 26 H 0.045 0.955 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.030 0.970 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.006 0.994 35 H 0.059 0.941 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.293 -5.082 -9.626 12.573 hybrid contribution -0.822 -0.526 1.032 1.420 sum 5.471 -5.608 -8.594 11.629 Atomic orbital electron populations 1.21833 0.93130 1.02067 1.02192 1.21846 0.97355 0.98160 0.92894 0.91304 1.23245 0.90610 0.97225 0.97728 1.65337 1.33953 1.22554 1.02626 1.22466 1.00178 0.92944 0.97732 1.23368 0.98261 0.97678 0.90089 1.22318 0.91484 0.94430 0.94710 0.93819 1.62326 1.28936 1.08070 1.26090 1.22313 0.99820 0.93518 0.96054 1.19914 0.94420 0.89764 0.89541 1.21188 1.06633 1.02101 1.24392 0.91886 1.24983 0.97941 0.94935 0.96770 1.69966 1.39503 1.08782 1.35570 0.86476 0.83415 0.78839 0.78894 1.19721 1.21175 1.21034 0.89378 0.92303 0.95168 0.93678 0.90884 0.95500 0.91635 0.91713 0.90929 0.92457 0.97042 0.90943 0.93338 0.99388 0.94138 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.09 37.16 0.30 -2.19 16 2 C -0.08 -1.43 3.52 -89.24 -0.31 -1.74 16 3 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 4 C 0.04 0.59 6.06 -2.09 -0.01 0.58 16 5 N -0.52 -7.69 5.66 -238.09 -1.35 -9.04 16 6 C 0.02 0.19 9.53 60.06 0.57 0.76 16 7 C 0.03 0.54 4.86 -2.18 -0.01 0.53 16 8 C 0.08 1.50 2.93 -66.33 -0.19 1.30 16 9 H 0.04 0.88 7.97 -51.93 -0.41 0.46 16 10 N -0.53 -11.24 3.37 -234.67 -0.79 -12.03 16 11 C 0.03 0.61 8.79 60.06 0.53 1.14 16 12 C 0.19 4.82 3.71 -4.98 -0.02 4.80 16 13 C -0.50 -13.93 8.52 -34.44 -0.29 -14.22 16 14 H 0.06 1.73 7.10 -52.49 -0.37 1.36 16 15 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 16 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 17 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H 0.09 1.94 4.74 -51.93 -0.25 1.69 16 22 H 0.06 1.12 7.84 -51.93 -0.41 0.71 16 23 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.04 0.66 7.56 -51.93 -0.39 0.27 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.03 0.31 7.98 -51.93 -0.41 -0.10 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 0.92 6.11 -51.93 -0.32 0.60 16 31 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 1.50 6.88 -51.93 -0.36 1.14 16 33 H 0.05 0.80 5.62 -51.93 -0.29 0.51 16 34 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 35 H 0.04 1.10 5.68 -51.93 -0.30 0.80 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 LS Contribution 275.54 15.07 4.15 4.15 Total: -1.00 -28.81 275.54 -7.83 -36.64 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -6.02 Total: -2.83 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 0.46 Total: -7.60 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -1.40 Total: -46.88 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.81 -7.83 -36.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307332498.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.841 kcal (2) G-P(sol) polarization free energy of solvation -28.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds