Wall clock time and date at job start Mon Mar 30 2020 02:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.29066 * 2 1 4 4 C 1.54380 * 110.32150 * 237.87278 * 2 1 3 5 5 N 1.48721 * 104.51610 * 217.32146 * 4 2 1 6 6 C 1.46898 * 111.01411 * 158.97108 * 5 4 2 7 7 C 1.48559 * 104.28929 * 39.36138 * 5 4 2 8 8 C 1.54258 * 110.32623 * 122.12718 * 2 1 3 9 9 H 1.09000 * 110.32541 * 237.79442 * 8 2 1 10 10 N 1.46906 * 110.32338 * 359.97438 * 8 2 1 11 11 C 1.46896 * 110.99845 * 153.95871 * 10 8 2 12 12 C 1.46903 * 110.99967 * 277.91713 * 10 8 2 13 13 C 1.50695 * 109.46906 * 169.99849 * 12 10 8 14 14 H 1.07995 * 120.00564 * 359.97438 * 13 12 10 15 15 C 1.37878 * 119.99678 * 180.02562 * 13 12 10 16 16 N 1.31512 * 120.00128 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00207 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46690 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47251 * 119.99589 * 17 15 13 20 20 H 1.48498 * 109.47344 * 239.99862 * 17 15 13 21 21 H 1.08997 * 109.46798 * 295.29373 * 1 2 3 22 22 H 1.08999 * 109.46966 * 175.29060 * 1 2 3 23 23 H 1.08997 * 109.46690 * 55.28862 * 1 2 3 24 24 H 1.08994 * 110.41538 * 336.03131 * 4 2 1 25 25 H 1.08997 * 110.41025 * 98.47589 * 4 2 1 26 26 H 1.09001 * 109.47088 * 304.48928 * 6 5 4 27 27 H 1.09001 * 109.47722 * 64.48839 * 6 5 4 28 28 H 1.09007 * 109.46733 * 184.49162 * 6 5 4 29 29 H 1.08991 * 110.41140 * 201.79133 * 7 5 4 30 30 H 1.09004 * 110.50595 * 79.40348 * 7 5 4 31 31 H 1.08994 * 109.47347 * 64.61112 * 11 10 8 32 32 H 1.09005 * 109.46811 * 184.60783 * 11 10 8 33 33 H 1.08996 * 109.47492 * 304.60137 * 11 10 8 34 34 H 1.09003 * 109.46586 * 289.99830 * 12 10 8 35 35 H 1.08997 * 109.47011 * 49.99746 * 12 10 8 36 36 H 0.96998 * 120.00498 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0662 -0.7699 -1.2260 5 7 3.2693 -1.4836 -0.7211 6 6 3.6068 -2.6232 -1.5844 7 6 2.8807 -1.9416 0.6376 8 6 2.0659 -0.7693 1.2250 9 1 2.7082 -0.1250 1.8254 10 7 0.9513 -1.2777 2.0358 11 6 1.3543 -2.4671 2.7978 12 6 0.4294 -0.2331 2.9272 13 6 -0.8546 -0.7067 3.5581 14 1 -1.2442 -1.6855 3.3204 15 6 -1.5325 0.1101 4.4381 16 7 -1.0583 1.3022 4.7272 17 14 -3.1237 -0.4771 5.2208 18 1 -3.4393 -1.8443 4.7346 19 1 -2.9700 -0.4996 6.6977 20 1 -4.2269 0.4459 4.8520 21 1 -0.3633 0.4391 0.9291 22 1 -0.3633 -1.0242 -0.0844 23 1 -0.3632 0.5852 -0.8448 24 1 1.3229 -1.4833 -1.5818 25 1 2.3394 -0.0760 -2.0209 26 1 2.7424 -3.2815 -1.6715 27 1 3.8876 -2.2597 -2.5729 28 1 4.4407 -3.1741 -1.1494 29 1 3.7671 -2.1297 1.2433 30 1 2.2654 -2.8393 0.5765 31 1 2.1243 -2.1930 3.5189 32 1 0.4900 -2.8708 3.3252 33 1 1.7475 -3.2201 2.1149 34 1 1.1612 -0.0220 3.7069 35 1 0.2391 0.6732 2.3524 36 1 -1.5350 1.8767 5.3465 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307332498.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:03 Heat of formation + Delta-G solvation = 1.188830 kcal Electronic energy + Delta-G solvation = -15037.171962 eV Core-core repulsion = 12748.910588 eV Total energy + Delta-G solvation = -2288.261374 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.67324 -37.29428 -34.65773 -33.65788 -30.67389 -28.49428 -27.80772 -26.80446 -24.99211 -22.93329 -21.88354 -20.05838 -18.49123 -17.40837 -16.75025 -16.56599 -15.81178 -15.48847 -15.10744 -14.77345 -14.40167 -13.86323 -13.54542 -13.18662 -13.13891 -13.05350 -12.76833 -12.72360 -12.53870 -12.30006 -12.13921 -11.87406 -11.78222 -11.51255 -11.27711 -11.04938 -10.55250 -9.45646 -8.96144 -8.18935 -6.28148 1.40783 1.41576 1.54733 2.40593 2.98788 3.14237 3.49640 3.66209 3.76892 4.12224 4.27226 4.47132 4.51720 4.58950 4.61239 4.67340 4.71299 4.77185 4.85733 4.95375 4.99653 5.03340 5.11988 5.19121 5.25892 5.28205 5.45251 5.66981 5.72244 5.86769 6.07992 6.10131 6.36454 6.67728 6.88841 7.41352 8.92450 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.053273 B = 0.007730 C = 0.007371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.465566 B = 3621.277719 C = 3797.603069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.086 4.086 3 H 0.066 0.934 4 C 0.049 3.951 5 N -0.529 5.529 6 C 0.015 3.985 7 C 0.045 3.955 8 C 0.072 3.928 9 H 0.022 0.978 10 N -0.529 5.529 11 C 0.033 3.967 12 C 0.207 3.793 13 C -0.516 4.516 14 H 0.062 0.938 15 C 0.001 3.999 16 N -0.936 5.936 17 Si 0.967 3.033 18 H -0.263 1.263 19 H -0.280 1.280 20 H -0.279 1.279 21 H 0.046 0.954 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.092 0.908 26 H 0.030 0.970 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.006 0.994 32 H 0.057 0.943 33 H 0.084 0.916 34 H -0.049 1.049 35 H 0.021 0.979 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.261 -6.883 -10.802 14.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.105 4.105 3 H 0.084 0.916 4 C -0.078 4.078 5 N -0.253 5.253 6 C -0.133 4.133 7 C -0.083 4.083 8 C -0.037 4.037 9 H 0.040 0.960 10 N -0.253 5.253 11 C -0.115 4.115 12 C 0.081 3.919 13 C -0.554 4.554 14 H 0.081 0.919 15 C -0.197 4.197 16 N -0.577 5.577 17 Si 0.792 3.208 18 H -0.187 1.187 19 H -0.206 1.206 20 H -0.205 1.205 21 H 0.065 0.935 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.111 0.889 26 H 0.049 0.951 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.024 0.976 32 H 0.076 0.924 33 H 0.102 0.898 34 H -0.032 1.032 35 H 0.039 0.961 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.342 -6.552 -11.027 14.309 hybrid contribution -0.776 -0.060 1.422 1.621 sum 5.567 -6.612 -9.605 12.922 Atomic orbital electron populations 1.21650 0.94077 1.01492 1.00883 1.21856 0.96482 0.98437 0.93734 0.91598 1.23169 0.90745 0.97340 0.96585 1.65358 1.33588 1.23974 1.02376 1.22557 1.00708 0.92062 0.98004 1.23224 0.97981 0.96075 0.90989 1.22430 0.90824 0.95824 0.94647 0.95994 1.62254 1.30576 1.07316 1.25194 1.22340 0.99098 0.93445 0.96608 1.19548 0.93186 0.90438 0.88749 1.21463 1.07344 1.02050 1.24589 0.91949 1.25883 1.01527 0.94954 0.97298 1.70094 1.41171 1.10055 1.36333 0.85370 0.78912 0.78667 0.77878 1.18725 1.20624 1.20462 0.93484 0.92975 0.92921 0.93200 0.88933 0.95143 0.89945 0.90546 0.90109 0.92163 0.97565 0.92430 0.89798 1.03159 0.96078 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.54 8.09 71.98 0.58 -3.96 16 2 C -0.09 -2.90 3.52 -9.90 -0.03 -2.93 16 3 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 4 C 0.05 1.33 6.06 86.42 0.52 1.85 16 5 N -0.53 -14.11 5.66 -907.19 -5.13 -19.24 16 6 C 0.02 0.30 9.53 127.69 1.22 1.52 16 7 C 0.05 1.35 4.86 86.45 0.42 1.77 16 8 C 0.07 2.70 2.93 45.81 0.13 2.83 16 9 H 0.02 0.91 7.97 -2.39 -0.02 0.89 16 10 N -0.53 -22.80 3.37 -896.36 -3.02 -25.82 16 11 C 0.03 1.28 8.79 127.69 1.12 2.41 16 12 C 0.21 11.05 3.71 85.55 0.32 11.37 16 13 C -0.52 -29.16 8.52 25.60 0.22 -28.94 16 14 H 0.06 3.46 7.10 -2.91 -0.02 3.44 16 15 C 0.00 0.06 5.46 84.66 0.46 0.52 16 16 N -0.94 -56.72 13.29 21.45 0.28 -56.43 16 17 Si 0.97 44.46 29.54 68.60 2.03 46.49 16 18 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H 0.05 2.13 4.74 -2.39 -0.01 2.12 16 22 H 0.05 1.95 7.84 -2.39 -0.02 1.93 16 23 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 24 H 0.05 1.31 7.56 -2.39 -0.02 1.29 16 25 H 0.09 2.16 8.14 -2.39 -0.02 2.15 16 26 H 0.03 0.60 7.98 -2.39 -0.02 0.58 16 27 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.06 1.76 6.11 -2.39 -0.01 1.74 16 31 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.06 2.37 6.88 -2.38 -0.02 2.36 16 33 H 0.08 2.62 5.62 -2.39 -0.01 2.61 16 34 H -0.05 -2.94 8.12 -2.39 -0.02 -2.96 16 35 H 0.02 1.22 5.68 -2.39 -0.01 1.20 16 36 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -62.73 275.54 0.15 -62.58 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 1.03 Total: 6.00 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 4.96 Total: -13.57 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -7.87 Total: -101.50 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -62.73 0.15 -62.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307332498.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.768 kcal (2) G-P(sol) polarization free energy of solvation -62.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds