Wall clock time and date at job start Mon Mar 30 2020 03:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47366 * 2 1 4 4 C 1.50701 * 109.46844 * 240.00248 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00237 * 4 2 1 6 6 C 1.37881 * 120.00154 * 60.00144 * 4 2 1 7 7 N 1.31515 * 119.99803 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00033 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46909 * 60.00575 * 8 6 4 10 10 H 1.48501 * 109.46952 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47167 * 299.99992 * 8 6 4 12 12 N 1.46903 * 109.46988 * 120.00827 * 2 1 3 13 13 C 1.46904 * 110.99515 * 205.89127 * 12 2 1 14 14 H 1.08994 * 109.50352 * 328.22139 * 13 12 2 15 15 C 1.53119 * 109.49913 * 208.14493 * 13 12 2 16 16 C 1.53122 * 109.21011 * 182.37297 * 15 13 12 17 17 C 1.53168 * 109.20608 * 57.62916 * 16 15 13 18 18 N 1.46846 * 109.55654 * 300.85489 * 17 16 15 19 19 C 1.46898 * 111.00243 * 185.84631 * 18 17 16 20 20 C 1.46849 * 111.19757 * 61.74268 * 18 17 16 21 21 H 1.08996 * 109.47430 * 179.36891 * 1 2 3 22 22 H 1.09002 * 109.46645 * 299.37371 * 1 2 3 23 23 H 1.09005 * 109.46775 * 59.36144 * 1 2 3 24 24 H 0.96998 * 120.00171 * 180.02562 * 7 6 4 25 25 H 1.00898 * 110.99924 * 81.93782 * 12 2 1 26 26 H 1.09002 * 109.52613 * 302.31019 * 15 13 12 27 27 H 1.09004 * 109.52152 * 62.43836 * 15 13 12 28 28 H 1.09003 * 109.50071 * 177.62997 * 16 15 13 29 29 H 1.08995 * 109.50402 * 297.74417 * 16 15 13 30 30 H 1.09007 * 109.44217 * 180.83573 * 17 16 15 31 31 H 1.09000 * 109.44384 * 60.88037 * 17 16 15 32 32 H 1.09003 * 109.47024 * 295.79056 * 19 18 17 33 33 H 1.08998 * 109.47474 * 55.78741 * 19 18 17 34 34 H 1.08995 * 109.47407 * 175.79286 * 19 18 17 35 35 H 1.08996 * 109.46215 * 178.23658 * 20 18 17 36 36 H 1.09008 * 109.44816 * 58.27237 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9436 0.8304 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.8278 -2.5196 -4.0083 10 1 1.8268 -0.4197 -5.2205 11 1 3.8073 -1.1189 -4.0079 12 7 2.0197 -0.6927 1.1994 13 6 3.3584 -0.2166 1.5725 14 1 3.9064 0.0690 0.6746 15 6 4.1137 -1.3329 2.2991 16 6 5.4850 -0.8110 2.7370 17 6 5.2944 0.4178 3.6313 18 7 4.5678 1.4569 2.8905 19 6 4.4881 2.7002 3.6689 20 6 3.2301 0.9936 2.5003 21 1 -0.3634 -1.0275 -0.0113 22 1 -0.3633 0.5041 0.8956 23 1 -0.3633 0.5238 -0.8843 24 1 0.7089 1.1616 -3.4843 25 1 2.0156 -1.6928 1.0663 26 1 3.5463 -1.6461 3.1755 27 1 4.2444 -2.1813 1.6273 28 1 6.0102 -1.5887 3.2916 29 1 6.0668 -0.5343 1.8578 30 1 6.2690 0.8015 3.9333 31 1 4.7243 0.1372 4.5169 32 1 3.9014 2.5270 4.5711 33 1 5.4926 3.0211 3.9449 34 1 4.0113 3.4749 3.0685 35 1 2.7052 1.7954 1.9811 36 1 2.6698 0.7103 3.3914 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307341916.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:06 Heat of formation + Delta-G solvation = -7.313734 kcal Electronic energy + Delta-G solvation = -14848.350942 eV Core-core repulsion = 12559.720870 eV Total energy + Delta-G solvation = -2288.630073 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.75835 -35.58319 -33.19410 -31.93831 -29.76037 -26.93334 -26.27899 -25.00366 -22.58849 -21.72118 -19.83819 -19.19195 -16.51140 -15.57715 -14.86305 -14.74586 -14.46940 -14.18529 -13.56193 -13.15393 -12.76667 -12.38245 -12.14752 -11.93899 -11.59655 -11.30782 -11.19633 -10.91567 -10.80268 -10.66862 -10.48412 -10.12976 -10.11905 -9.81667 -9.50656 -9.05350 -8.36229 -8.04348 -7.24750 -5.96324 -4.08223 3.30925 3.35724 3.38153 4.17430 4.42931 5.05294 5.16796 5.25841 5.30318 5.42204 5.56883 5.61014 5.71771 5.82983 5.96545 5.99700 6.05921 6.16045 6.25357 6.32458 6.43627 6.67206 6.90728 6.94165 7.17732 7.32176 7.37046 7.38421 7.58724 7.78442 8.12423 8.21951 8.37536 8.70303 9.04171 9.59215 11.05111 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035924 B = 0.008199 C = 0.007724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.239782 B = 3414.292881 C = 3624.091909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.209 3.791 3 H 0.032 0.968 4 C -0.543 4.543 5 H 0.052 0.948 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.889 3.111 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.691 5.691 13 C 0.096 3.904 14 H 0.058 0.942 15 C -0.123 4.123 16 C -0.114 4.114 17 C 0.058 3.942 18 N -0.546 5.546 19 C 0.029 3.971 20 C 0.072 3.928 21 H 0.023 0.977 22 H 0.011 0.989 23 H 0.080 0.920 24 H 0.261 0.739 25 H 0.330 0.670 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.028 0.972 32 H 0.020 0.980 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.516 -0.409 10.418 12.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.101 3.899 3 H 0.050 0.950 4 C -0.582 4.582 5 H 0.070 0.930 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.717 3.283 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.204 1.204 12 N -0.321 5.321 13 C -0.015 4.015 14 H 0.076 0.924 15 C -0.161 4.161 16 C -0.152 4.152 17 C -0.070 4.070 18 N -0.271 5.271 19 C -0.120 4.120 20 C -0.056 4.056 21 H 0.043 0.957 22 H 0.030 0.970 23 H 0.099 0.901 24 H 0.071 0.929 25 H 0.147 0.853 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.039 0.961 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 6.347 0.248 10.279 12.083 hybrid contribution 0.390 -1.022 -0.921 1.430 sum 6.737 -0.774 9.359 11.557 Atomic orbital electron populations 1.21689 0.97958 0.98988 0.99685 1.19171 0.92201 0.94090 0.84459 0.94964 1.21803 1.31736 1.12719 0.91944 0.92974 1.24930 0.94858 0.94862 0.98909 1.69874 1.36429 1.22721 1.23510 0.86709 0.79198 0.79824 0.82563 1.20335 1.21239 1.20363 1.60832 1.21891 1.09486 1.39875 1.21277 0.90607 0.92901 0.96699 0.92412 1.21797 0.95573 0.98398 1.00291 1.21568 0.97665 0.96110 0.99902 1.22075 0.97854 0.92391 0.94679 1.61828 1.18958 1.04213 1.42054 1.22301 1.01053 0.92600 0.96010 1.22065 0.87385 0.98131 0.97997 0.95742 0.96951 0.90118 0.92877 0.85281 0.92209 0.92077 0.91966 0.91156 0.91427 0.95366 0.96117 0.91890 0.91369 0.90840 0.95032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.12 9.29 37.16 0.35 -2.78 16 2 C 0.21 5.31 2.39 -68.86 -0.16 5.15 16 3 H 0.03 0.91 7.38 -51.93 -0.38 0.53 16 4 C -0.54 -14.91 8.33 -34.44 -0.29 -15.19 16 5 H 0.05 1.42 7.73 -52.49 -0.41 1.01 16 6 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 7 N -0.89 -25.53 11.33 55.43 0.63 -24.91 16 8 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.69 -14.90 6.07 -100.87 -0.61 -15.51 16 13 C 0.10 1.87 2.44 -67.63 -0.17 1.70 16 14 H 0.06 1.31 7.64 -51.93 -0.40 0.92 16 15 C -0.12 -1.95 5.23 -26.61 -0.14 -2.09 16 16 C -0.11 -1.57 6.11 -26.58 -0.16 -1.73 16 17 C 0.06 0.79 5.47 -3.77 -0.02 0.77 16 18 N -0.55 -8.61 4.91 -242.88 -1.19 -9.80 16 19 C 0.03 0.38 9.59 60.06 0.58 0.95 16 20 C 0.07 1.30 4.99 -3.84 -0.02 1.29 16 21 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.08 2.19 6.09 -51.93 -0.32 1.87 16 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.33 6.99 7.98 -39.29 -0.31 6.68 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 0.80 8.09 -51.92 -0.42 0.38 16 31 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.45 7.68 -51.93 -0.40 1.05 16 36 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 LS Contribution 282.72 15.07 4.26 4.26 Total: -1.00 -28.27 282.72 -8.49 -36.75 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.42 Total: 2.94 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -0.13 Total: -10.18 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: -1.18 Total: -50.22 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.27 -8.49 -36.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307341916.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.438 kcal (2) G-P(sol) polarization free energy of solvation -28.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds