Wall clock time and date at job start Mon Mar 30 2020 03:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47366 * 2 1 4 4 C 1.50701 * 109.46844 * 240.00248 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00237 * 4 2 1 6 6 C 1.37881 * 120.00154 * 60.00144 * 4 2 1 7 7 N 1.31515 * 119.99803 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00033 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46909 * 60.00575 * 8 6 4 10 10 H 1.48501 * 109.46952 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47167 * 299.99992 * 8 6 4 12 12 N 1.46903 * 109.46988 * 120.00827 * 2 1 3 13 13 C 1.46904 * 110.99515 * 205.89127 * 12 2 1 14 14 H 1.08994 * 109.50352 * 328.22139 * 13 12 2 15 15 C 1.53119 * 109.49913 * 208.14493 * 13 12 2 16 16 C 1.53122 * 109.21011 * 182.37297 * 15 13 12 17 17 C 1.53168 * 109.20608 * 57.62916 * 16 15 13 18 18 N 1.46846 * 109.55654 * 300.85489 * 17 16 15 19 19 C 1.46898 * 111.00243 * 185.84631 * 18 17 16 20 20 C 1.46849 * 111.19757 * 61.74268 * 18 17 16 21 21 H 1.08996 * 109.47430 * 179.36891 * 1 2 3 22 22 H 1.09002 * 109.46645 * 299.37371 * 1 2 3 23 23 H 1.09005 * 109.46775 * 59.36144 * 1 2 3 24 24 H 0.96998 * 120.00171 * 180.02562 * 7 6 4 25 25 H 1.00898 * 110.99924 * 81.93782 * 12 2 1 26 26 H 1.09002 * 109.52613 * 302.31019 * 15 13 12 27 27 H 1.09004 * 109.52152 * 62.43836 * 15 13 12 28 28 H 1.09003 * 109.50071 * 177.62997 * 16 15 13 29 29 H 1.08995 * 109.50402 * 297.74417 * 16 15 13 30 30 H 1.09007 * 109.44217 * 180.83573 * 17 16 15 31 31 H 1.09000 * 109.44384 * 60.88037 * 17 16 15 32 32 H 1.09003 * 109.47024 * 295.79056 * 19 18 17 33 33 H 1.08998 * 109.47474 * 55.78741 * 19 18 17 34 34 H 1.08995 * 109.47407 * 175.79286 * 19 18 17 35 35 H 1.08996 * 109.46215 * 178.23658 * 20 18 17 36 36 H 1.09008 * 109.44816 * 58.27237 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9436 0.8304 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.8278 -2.5196 -4.0083 10 1 1.8268 -0.4197 -5.2205 11 1 3.8073 -1.1189 -4.0079 12 7 2.0197 -0.6927 1.1994 13 6 3.3584 -0.2166 1.5725 14 1 3.9064 0.0690 0.6746 15 6 4.1137 -1.3329 2.2991 16 6 5.4850 -0.8110 2.7370 17 6 5.2944 0.4178 3.6313 18 7 4.5678 1.4569 2.8905 19 6 4.4881 2.7002 3.6689 20 6 3.2301 0.9936 2.5003 21 1 -0.3634 -1.0275 -0.0113 22 1 -0.3633 0.5041 0.8956 23 1 -0.3633 0.5238 -0.8843 24 1 0.7089 1.1616 -3.4843 25 1 2.0156 -1.6928 1.0663 26 1 3.5463 -1.6461 3.1755 27 1 4.2444 -2.1813 1.6273 28 1 6.0102 -1.5887 3.2916 29 1 6.0668 -0.5343 1.8578 30 1 6.2690 0.8015 3.9333 31 1 4.7243 0.1372 4.5169 32 1 3.9014 2.5270 4.5711 33 1 5.4926 3.0211 3.9449 34 1 4.0113 3.4749 3.0685 35 1 2.7052 1.7954 1.9811 36 1 2.6698 0.7103 3.3914 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307341916.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:06 Heat of formation + Delta-G solvation = -27.003983 kcal Electronic energy + Delta-G solvation = -14849.204776 eV Core-core repulsion = 12559.720870 eV Total energy + Delta-G solvation = -2289.483906 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.10483 -37.33862 -34.85289 -33.53646 -31.46028 -28.54824 -27.50894 -27.15686 -23.87651 -23.10109 -21.79371 -20.54850 -18.60112 -16.92678 -16.78773 -16.20045 -15.78269 -15.42630 -15.32836 -14.67518 -14.35777 -13.83821 -13.63413 -13.30859 -13.19010 -13.12194 -12.83642 -12.53844 -12.40416 -12.33927 -12.11770 -12.01150 -11.69778 -11.33046 -11.14136 -11.06042 -10.51185 -9.25458 -9.09973 -8.07850 -6.29183 1.38847 1.39714 1.47448 2.39727 2.95299 3.14329 3.71352 3.88693 4.00286 4.16222 4.38655 4.43575 4.56059 4.63736 4.68007 4.79412 4.84005 4.85699 4.99463 5.01368 5.05341 5.13740 5.14491 5.23854 5.33782 5.43978 5.49990 5.66423 6.02043 6.11364 6.17750 6.22927 6.40800 6.80538 7.00174 7.42369 8.90834 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035924 B = 0.008199 C = 0.007724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.239782 B = 3414.292881 C = 3624.091909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.216 3.784 3 H -0.004 1.004 4 C -0.558 4.558 5 H 0.051 0.949 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.954 3.046 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.275 1.275 12 N -0.683 5.683 13 C 0.096 3.904 14 H 0.017 0.983 15 C -0.116 4.116 16 C -0.110 4.110 17 C 0.057 3.943 18 N -0.564 5.564 19 C 0.028 3.972 20 C 0.084 3.916 21 H 0.028 0.972 22 H 0.025 0.975 23 H 0.056 0.944 24 H 0.263 0.737 25 H 0.334 0.666 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.038 0.962 32 H 0.030 0.970 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.043 0.957 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.760 -1.419 11.490 13.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.107 3.893 3 H 0.014 0.986 4 C -0.597 4.597 5 H 0.069 0.931 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.779 3.221 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.201 1.201 12 N -0.313 5.313 13 C -0.015 4.015 14 H 0.035 0.965 15 C -0.154 4.154 16 C -0.149 4.149 17 C -0.070 4.070 18 N -0.289 5.289 19 C -0.119 4.119 20 C -0.045 4.045 21 H 0.047 0.953 22 H 0.044 0.956 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.151 0.849 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.113 0.887 29 H 0.075 0.925 30 H 0.110 0.890 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 7.601 -0.766 11.372 13.700 hybrid contribution 0.023 -0.668 -1.212 1.385 sum 7.624 -1.434 10.160 12.783 Atomic orbital electron populations 1.21532 0.97621 0.98960 0.99192 1.18927 0.92432 0.92386 0.85556 0.98554 1.22085 1.31793 1.12810 0.92997 0.93099 1.25717 0.95053 0.95585 1.01910 1.70007 1.37272 1.23876 1.24174 0.85686 0.78587 0.78937 0.78887 1.19438 1.20769 1.20058 1.60779 1.23462 1.09379 1.37645 1.21301 0.89261 0.95025 0.95871 0.96470 1.21742 0.96648 0.96830 1.00160 1.21582 0.96104 0.97245 0.99923 1.22185 0.98774 0.91631 0.94453 1.61813 1.17426 1.05820 1.43887 1.22359 1.02635 0.91153 0.95789 1.21801 0.88894 0.96422 0.97360 0.95311 0.95563 0.92478 0.92823 0.84930 0.91007 0.92217 0.88715 0.92470 0.88990 0.94410 0.95153 0.89523 0.92252 0.93795 0.94634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.82 9.29 71.98 0.67 -5.15 16 2 C 0.22 11.29 2.39 44.17 0.11 11.39 16 3 H 0.00 -0.21 7.38 -2.39 -0.02 -0.22 16 4 C -0.56 -31.12 8.33 25.60 0.21 -30.90 16 5 H 0.05 2.79 7.73 -2.91 -0.02 2.76 16 6 C 0.02 0.97 5.30 84.66 0.45 1.41 16 7 N -0.91 -53.64 11.33 21.45 0.24 -53.39 16 8 Si 0.95 44.15 29.54 68.60 2.03 46.18 16 9 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 N -0.68 -29.74 6.07 -473.04 -2.87 -32.61 16 13 C 0.10 3.77 2.44 44.96 0.11 3.88 16 14 H 0.02 0.81 7.64 -2.39 -0.02 0.79 16 15 C -0.12 -3.51 5.23 30.67 0.16 -3.35 16 16 C -0.11 -2.76 6.11 30.69 0.19 -2.57 16 17 C 0.06 1.38 5.47 86.37 0.47 1.85 16 18 N -0.56 -17.14 4.91 -922.32 -4.53 -21.67 16 19 C 0.03 0.69 9.59 127.69 1.22 1.92 16 20 C 0.08 3.04 4.99 86.32 0.43 3.47 16 21 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.06 3.17 6.09 -2.38 -0.01 3.15 16 24 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 25 H 0.33 14.06 7.98 -89.70 -0.72 13.34 16 26 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.09 1.81 8.09 -2.38 -0.02 1.79 16 31 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.09 1.70 8.09 -2.39 -0.02 1.68 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.04 1.81 7.68 -2.39 -0.02 1.79 16 36 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -61.11 282.72 -0.80 -61.91 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.31 Total: 17.63 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: 4.02 Total: -18.05 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -7.16 Total: -107.67 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -61.11 -0.80 -61.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307341916.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.903 kcal (2) G-P(sol) polarization free energy of solvation -61.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds