Wall clock time and date at job start Mon Mar 30 2020 03:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47578 * 2 1 4 4 C 1.50697 * 109.47146 * 239.99651 * 2 1 3 5 5 H 1.08003 * 120.00175 * 275.00343 * 4 2 1 6 6 C 1.37875 * 120.00015 * 95.00102 * 4 2 1 7 7 N 1.31520 * 120.00371 * 184.91627 * 6 4 2 8 8 Si 1.86800 * 119.99864 * 4.91556 * 6 4 2 9 9 H 1.48491 * 109.47375 * 84.83220 * 8 6 4 10 10 H 1.48505 * 109.47312 * 204.83262 * 8 6 4 11 11 H 1.48503 * 109.47071 * 324.82910 * 8 6 4 12 12 N 1.46900 * 109.47043 * 120.00090 * 2 1 3 13 13 C 1.46902 * 110.99748 * 274.99578 * 12 2 1 14 14 H 1.09001 * 109.50413 * 35.00790 * 13 12 2 15 15 C 1.53124 * 109.50201 * 155.07981 * 13 12 2 16 16 C 1.53121 * 109.16016 * 177.60073 * 15 13 12 17 17 C 1.53038 * 109.27492 * 302.34180 * 16 15 13 18 18 N 1.46849 * 109.52543 * 59.18355 * 17 16 15 19 19 C 1.46894 * 111.00193 * 174.15926 * 18 17 16 20 20 C 1.46848 * 111.22922 * 298.27892 * 18 17 16 21 21 H 1.08996 * 109.47109 * 175.04866 * 1 2 3 22 22 H 1.09000 * 109.46636 * 295.04688 * 1 2 3 23 23 H 1.09000 * 109.46831 * 55.04758 * 1 2 3 24 24 H 0.96999 * 120.00071 * 179.97438 * 7 6 4 25 25 H 1.00900 * 111.00467 * 151.04929 * 12 2 1 26 26 H 1.09001 * 109.52128 * 297.49971 * 15 13 12 27 27 H 1.08998 * 109.52102 * 57.69243 * 15 13 12 28 28 H 1.08996 * 109.50858 * 62.28673 * 16 15 13 29 29 H 1.09003 * 109.50437 * 182.40591 * 16 15 13 30 30 H 1.09001 * 109.46443 * 179.19854 * 17 16 15 31 31 H 1.08996 * 109.46765 * 299.17501 * 17 16 15 32 32 H 1.09000 * 109.47199 * 56.04975 * 19 18 17 33 33 H 1.09000 * 109.47058 * 176.04925 * 19 18 17 34 34 H 1.08996 * 109.47035 * 296.04198 * 19 18 17 35 35 H 1.09002 * 109.42799 * 301.68465 * 20 18 17 36 36 H 1.09004 * 109.49574 * 181.71700 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1355 -1.7856 -1.2289 6 6 2.3603 0.0120 -2.3580 7 7 2.7060 -0.6133 -3.4622 8 14 2.3136 1.8789 -2.3174 9 1 3.5990 2.3948 -1.7822 10 1 2.1058 2.3990 -3.6929 11 1 1.1986 2.3274 -1.4451 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3468 14 1 1.2578 0.9332 2.2912 15 6 1.9790 -0.5797 3.6469 16 6 2.1055 0.3744 4.8378 17 6 3.4349 1.1267 4.7434 18 7 3.4848 1.8789 3.4832 19 6 4.6858 2.7224 3.4206 20 6 3.4121 0.9801 2.3242 21 1 -0.3633 -1.0238 -0.0887 22 1 -0.3632 0.4351 0.9311 23 1 -0.3633 0.5888 -0.8423 24 1 2.9363 -0.1050 -4.2556 25 1 2.9173 -1.1205 1.0288 26 1 1.0145 -1.0860 3.6867 27 1 2.7806 -1.3174 3.6844 28 1 1.2817 1.0879 4.8217 29 1 2.0754 -0.1961 5.7661 30 1 3.5218 1.8174 5.5822 31 1 4.2587 0.4137 4.7734 32 1 5.5722 2.1033 3.5588 33 1 4.7340 3.2144 2.4492 34 1 4.6422 3.4754 4.2074 35 1 4.2364 0.2681 2.3653 36 1 3.4819 1.5637 1.4062 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307341919.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:09 Heat of formation + Delta-G solvation = -6.960665 kcal Electronic energy + Delta-G solvation = -14926.145825 eV Core-core repulsion = 12637.531062 eV Total energy + Delta-G solvation = -2288.614763 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.98660 -35.75133 -33.19277 -32.12610 -30.29753 -27.11992 -26.56372 -25.15839 -22.71219 -21.89192 -19.62862 -19.51347 -17.01749 -15.66404 -15.37301 -14.65227 -14.48658 -14.12495 -13.59996 -13.25901 -13.13692 -12.60304 -12.45237 -12.19175 -11.94385 -11.71114 -11.11462 -11.05591 -10.95984 -10.77409 -10.61046 -10.42956 -10.13863 -9.98807 -9.71232 -8.99700 -8.60235 -8.22349 -7.40464 -6.11812 -4.12255 3.24158 3.33752 3.37185 4.04049 4.37697 4.87137 5.08214 5.12053 5.22254 5.29657 5.44387 5.48979 5.51376 5.65425 5.75333 5.88515 5.92934 5.99556 6.05986 6.21324 6.23779 6.42288 6.60300 6.62293 6.73144 6.87079 6.93130 7.18195 7.20088 7.43980 7.64348 8.00966 8.41724 8.67162 8.97828 9.52676 11.01240 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034831 B = 0.009513 C = 0.008283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.683102 B = 2942.607679 C = 3379.765541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.179 3.821 3 H 0.005 0.995 4 C -0.518 4.518 5 H 0.079 0.921 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.874 3.126 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.264 1.264 12 N -0.676 5.676 13 C 0.089 3.911 14 H 0.077 0.923 15 C -0.107 4.107 16 C -0.116 4.116 17 C 0.057 3.943 18 N -0.542 5.542 19 C 0.025 3.975 20 C 0.028 3.972 21 H 0.050 0.950 22 H 0.021 0.979 23 H 0.039 0.961 24 H 0.264 0.736 25 H 0.339 0.661 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.030 0.970 32 H 0.022 0.978 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.032 0.968 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.557 4.843 14.647 15.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.071 3.929 3 H 0.023 0.977 4 C -0.557 4.557 5 H 0.097 0.903 6 C -0.129 4.129 7 N -0.534 5.534 8 Si 0.701 3.299 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.188 1.188 12 N -0.307 5.307 13 C -0.022 4.022 14 H 0.096 0.904 15 C -0.146 4.146 16 C -0.155 4.155 17 C -0.071 4.071 18 N -0.267 5.267 19 C -0.123 4.123 20 C -0.101 4.101 21 H 0.070 0.930 22 H 0.040 0.960 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.157 0.843 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.048 0.952 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.574 4.913 14.573 15.390 hybrid contribution 1.627 1.091 -0.426 2.004 sum 2.200 6.003 14.147 15.525 Atomic orbital electron populations 1.21842 0.98114 1.00623 0.97747 1.19574 0.92416 0.92582 0.88341 0.97708 1.21098 1.43538 0.95881 0.95143 0.90289 1.25029 0.94432 0.98134 0.95348 1.69905 1.46141 1.35768 1.01635 0.86911 0.79045 0.86649 0.77250 1.20408 1.21425 1.18848 1.60860 1.32718 1.31806 1.05315 1.21605 0.95317 0.93328 0.91990 0.90431 1.21571 1.02192 0.97396 0.93399 1.21591 0.97297 0.98356 0.98239 1.22086 0.97355 0.95892 0.91809 1.61919 1.38631 1.23664 1.02468 1.22347 0.90518 0.96994 1.02490 1.22988 0.99038 0.95025 0.93090 0.93050 0.95990 0.94152 0.92601 0.84286 0.91296 0.92571 0.91290 0.91775 0.91303 0.95218 0.95912 0.91517 0.91658 0.94936 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.79 9.40 37.16 0.35 -2.44 16 2 C 0.18 4.24 2.08 -68.86 -0.14 4.10 16 3 H 0.01 0.13 4.28 -51.93 -0.22 -0.09 16 4 C -0.52 -14.42 8.84 -34.44 -0.30 -14.72 16 5 H 0.08 2.41 8.06 -52.48 -0.42 1.98 16 6 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 8 Si 0.87 21.60 26.99 -169.99 -4.59 17.01 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.26 -6.34 6.82 56.52 0.39 -5.95 16 12 N -0.68 -13.95 6.05 -100.87 -0.61 -14.56 16 13 C 0.09 1.56 2.42 -67.63 -0.16 1.40 16 14 H 0.08 1.47 7.10 -51.93 -0.37 1.10 16 15 C -0.11 -1.57 5.61 -26.60 -0.15 -1.72 16 16 C -0.12 -1.44 6.09 -26.65 -0.16 -1.60 16 17 C 0.06 0.71 5.46 -3.83 -0.02 0.69 16 18 N -0.54 -8.00 4.91 -242.96 -1.19 -9.19 16 19 C 0.03 0.32 9.62 60.06 0.58 0.90 16 20 C 0.03 0.48 4.70 -3.84 -0.02 0.46 16 21 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 22 H 0.02 0.43 7.38 -51.93 -0.38 0.05 16 23 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.34 7.10 8.08 -39.29 -0.32 6.78 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 31 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.87 8.02 -51.93 -0.42 0.45 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 36 H 0.07 1.39 7.34 -51.93 -0.38 1.01 16 LS Contribution 280.72 15.07 4.23 4.23 Total: -1.00 -29.16 280.72 -7.83 -36.99 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -6.31 Total: 2.91 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -0.13 Total: -10.95 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -1.03 Total: -50.19 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.59 Total: 17.01 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.16 -7.83 -36.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307341919.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.032 kcal (2) G-P(sol) polarization free energy of solvation -29.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds