Wall clock time and date at job start Mon Mar 30 2020 03:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47578 * 2 1 4 4 C 1.50697 * 109.47146 * 239.99651 * 2 1 3 5 5 H 1.08003 * 120.00175 * 275.00343 * 4 2 1 6 6 C 1.37875 * 120.00015 * 95.00102 * 4 2 1 7 7 N 1.31520 * 120.00371 * 184.91627 * 6 4 2 8 8 Si 1.86800 * 119.99864 * 4.91556 * 6 4 2 9 9 H 1.48491 * 109.47375 * 84.83220 * 8 6 4 10 10 H 1.48505 * 109.47312 * 204.83262 * 8 6 4 11 11 H 1.48503 * 109.47071 * 324.82910 * 8 6 4 12 12 N 1.46900 * 109.47043 * 120.00090 * 2 1 3 13 13 C 1.46902 * 110.99748 * 274.99578 * 12 2 1 14 14 H 1.09001 * 109.50413 * 35.00790 * 13 12 2 15 15 C 1.53124 * 109.50201 * 155.07981 * 13 12 2 16 16 C 1.53121 * 109.16016 * 177.60073 * 15 13 12 17 17 C 1.53038 * 109.27492 * 302.34180 * 16 15 13 18 18 N 1.46849 * 109.52543 * 59.18355 * 17 16 15 19 19 C 1.46894 * 111.00193 * 174.15926 * 18 17 16 20 20 C 1.46848 * 111.22922 * 298.27892 * 18 17 16 21 21 H 1.08996 * 109.47109 * 175.04866 * 1 2 3 22 22 H 1.09000 * 109.46636 * 295.04688 * 1 2 3 23 23 H 1.09000 * 109.46831 * 55.04758 * 1 2 3 24 24 H 0.96999 * 120.00071 * 179.97438 * 7 6 4 25 25 H 1.00900 * 111.00467 * 151.04929 * 12 2 1 26 26 H 1.09001 * 109.52128 * 297.49971 * 15 13 12 27 27 H 1.08998 * 109.52102 * 57.69243 * 15 13 12 28 28 H 1.08996 * 109.50858 * 62.28673 * 16 15 13 29 29 H 1.09003 * 109.50437 * 182.40591 * 16 15 13 30 30 H 1.09001 * 109.46443 * 179.19854 * 17 16 15 31 31 H 1.08996 * 109.46765 * 299.17501 * 17 16 15 32 32 H 1.09000 * 109.47199 * 56.04975 * 19 18 17 33 33 H 1.09000 * 109.47058 * 176.04925 * 19 18 17 34 34 H 1.08996 * 109.47035 * 296.04198 * 19 18 17 35 35 H 1.09002 * 109.42799 * 301.68465 * 20 18 17 36 36 H 1.09004 * 109.49574 * 181.71700 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1355 -1.7856 -1.2289 6 6 2.3603 0.0120 -2.3580 7 7 2.7060 -0.6133 -3.4622 8 14 2.3136 1.8789 -2.3174 9 1 3.5990 2.3948 -1.7822 10 1 2.1058 2.3990 -3.6929 11 1 1.1986 2.3274 -1.4451 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3468 14 1 1.2578 0.9332 2.2912 15 6 1.9790 -0.5797 3.6469 16 6 2.1055 0.3744 4.8378 17 6 3.4349 1.1267 4.7434 18 7 3.4848 1.8789 3.4832 19 6 4.6858 2.7224 3.4206 20 6 3.4121 0.9801 2.3242 21 1 -0.3633 -1.0238 -0.0887 22 1 -0.3632 0.4351 0.9311 23 1 -0.3633 0.5888 -0.8423 24 1 2.9363 -0.1050 -4.2556 25 1 2.9173 -1.1205 1.0288 26 1 1.0145 -1.0860 3.6867 27 1 2.7806 -1.3174 3.6844 28 1 1.2817 1.0879 4.8217 29 1 2.0754 -0.1961 5.7661 30 1 3.5218 1.8174 5.5822 31 1 4.2587 0.4137 4.7734 32 1 5.5722 2.1033 3.5588 33 1 4.7340 3.2144 2.4492 34 1 4.6422 3.4754 4.2074 35 1 4.2364 0.2681 2.3653 36 1 3.4819 1.5637 1.4062 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307341919.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:09 Heat of formation + Delta-G solvation = -28.347062 kcal Electronic energy + Delta-G solvation = -14927.073209 eV Core-core repulsion = 12637.531062 eV Total energy + Delta-G solvation = -2289.542146 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.23502 -37.37555 -34.80015 -33.75624 -31.88984 -28.64137 -27.66140 -27.21398 -23.90045 -23.17551 -21.42425 -20.81028 -19.07556 -17.12958 -16.78819 -16.09415 -15.76889 -15.59042 -14.96247 -14.78840 -14.62423 -14.51868 -13.84256 -13.47608 -13.24687 -13.00322 -12.85303 -12.67968 -12.58806 -12.30052 -12.22242 -11.86703 -11.63377 -11.41506 -11.32078 -11.02076 -10.76707 -9.34409 -9.08106 -8.33576 -6.38472 1.28185 1.31461 1.41970 2.28994 2.91342 3.01600 3.56160 3.90473 3.94345 4.16713 4.18769 4.37676 4.47322 4.52101 4.56414 4.61013 4.76073 4.81668 4.90966 4.92356 4.93835 4.96911 5.06535 5.12642 5.17563 5.39718 5.45577 5.51380 5.69449 5.93823 6.10107 6.15618 6.53724 6.68581 6.84399 7.30983 8.83106 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034831 B = 0.009513 C = 0.008283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.683102 B = 2942.607679 C = 3379.765541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.184 3.816 3 H 0.002 0.998 4 C -0.520 4.520 5 H 0.038 0.962 6 C 0.018 3.982 7 N -0.943 5.943 8 Si 0.937 3.063 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.250 1.250 12 N -0.678 5.678 13 C 0.090 3.910 14 H 0.067 0.933 15 C -0.102 4.102 16 C -0.110 4.110 17 C 0.054 3.946 18 N -0.552 5.552 19 C 0.024 3.976 20 C 0.036 3.964 21 H 0.043 0.957 22 H 0.047 0.953 23 H 0.035 0.965 24 H 0.267 0.733 25 H 0.334 0.666 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.031 0.969 32 H 0.027 0.973 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.029 0.971 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.402 6.444 17.037 18.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.075 3.925 3 H 0.020 0.980 4 C -0.558 4.558 5 H 0.056 0.944 6 C -0.180 4.180 7 N -0.583 5.583 8 Si 0.761 3.239 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.174 1.174 12 N -0.308 5.308 13 C -0.021 4.021 14 H 0.086 0.914 15 C -0.140 4.140 16 C -0.148 4.148 17 C -0.073 4.073 18 N -0.277 5.277 19 C -0.124 4.124 20 C -0.094 4.094 21 H 0.062 0.938 22 H 0.066 0.934 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.152 0.848 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.047 0.953 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.414 6.514 16.998 18.209 hybrid contribution 1.692 0.510 -1.117 2.091 sum 2.107 7.024 15.881 17.493 Atomic orbital electron populations 1.21752 0.96851 1.00384 0.98913 1.19432 0.93308 0.91930 0.87837 0.97995 1.21300 1.43186 0.94275 0.97082 0.94378 1.25834 0.94204 1.03114 0.94833 1.70043 1.47899 1.37820 1.02542 0.85891 0.79765 0.80605 0.77593 1.19512 1.21017 1.17365 1.60817 1.32504 1.32404 1.05068 1.21667 0.95344 0.93123 0.91982 0.91434 1.21521 1.02174 0.97581 0.92738 1.21580 0.97195 0.97965 0.98079 1.22208 0.97429 0.96377 0.91293 1.61932 1.39869 1.23486 1.02447 1.22408 0.89926 0.97191 1.02902 1.22754 0.98402 0.94894 0.93351 0.93765 0.93430 0.94571 0.92424 0.84838 0.91395 0.92538 0.91383 0.89029 0.88910 0.95046 0.95397 0.92466 0.89337 0.95285 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 9.40 71.98 0.68 -4.58 16 2 C 0.18 8.68 2.08 44.17 0.09 8.77 16 3 H 0.00 0.12 4.28 -2.39 -0.01 0.10 16 4 C -0.52 -29.65 8.84 25.60 0.23 -29.42 16 5 H 0.04 2.43 8.06 -2.91 -0.02 2.40 16 6 C 0.02 1.07 5.47 84.65 0.46 1.53 16 7 N -0.94 -58.70 13.96 21.45 0.30 -58.40 16 8 Si 0.94 44.60 26.99 68.60 1.85 46.45 16 9 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 10 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 11 H -0.25 -11.24 6.82 99.48 0.68 -10.56 16 12 N -0.68 -27.83 6.05 -473.04 -2.86 -30.69 16 13 C 0.09 3.03 2.42 44.97 0.11 3.14 16 14 H 0.07 2.43 7.10 -2.39 -0.02 2.42 16 15 C -0.10 -2.76 5.61 30.68 0.17 -2.59 16 16 C -0.11 -2.33 6.09 30.65 0.19 -2.14 16 17 C 0.05 1.17 5.46 86.33 0.47 1.64 16 18 N -0.55 -14.94 4.91 -922.60 -4.53 -19.47 16 19 C 0.02 0.54 9.62 127.69 1.23 1.77 16 20 C 0.04 1.18 4.70 86.32 0.41 1.59 16 21 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 22 H 0.05 1.81 7.38 -2.39 -0.02 1.79 16 23 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 25 H 0.33 14.19 8.08 -89.69 -0.72 13.47 16 26 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.09 1.61 8.12 -2.39 -0.02 1.59 16 31 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.06 1.40 8.02 -2.39 -0.02 1.38 16 34 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.03 0.95 8.12 -2.39 -0.02 0.94 16 36 H 0.05 1.77 7.34 -2.38 -0.02 1.75 16 Total: -1.00 -63.11 280.72 -0.93 -64.04 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.28 Total: 18.37 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: 4.03 Total: -20.29 kcal Atomic # 7 Polarization: -101.47 SS G_CDS: -7.09 Total: -108.57 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.85 Total: 46.45 kcal Total: -63.11 -0.93 -64.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307341919.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.697 kcal (2) G-P(sol) polarization free energy of solvation -63.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds