Wall clock time and date at job start Mon Mar 30 2020 02:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.50142 * 2 1 4 4 C 1.53044 * 109.49948 * 239.92443 * 2 1 3 5 5 N 1.46848 * 109.51792 * 180.87894 * 4 2 1 6 6 C 1.46906 * 110.99535 * 185.83763 * 5 4 2 7 7 C 1.46850 * 111.19941 * 61.74375 * 5 4 2 8 8 H 1.08994 * 109.46358 * 58.26863 * 7 5 4 9 9 C 1.53005 * 109.46084 * 178.23889 * 7 5 4 10 10 C 1.53036 * 109.52003 * 298.25338 * 7 5 4 11 11 C 1.53117 * 109.28029 * 59.18340 * 10 7 5 12 12 H 1.08997 * 109.57814 * 62.28010 * 11 10 7 13 13 N 1.46502 * 109.52436 * 182.44014 * 11 10 7 14 14 C 1.36928 * 119.99860 * 274.68001 * 13 11 10 15 15 H 1.08001 * 120.00326 * 359.97438 * 14 13 11 16 16 C 1.38815 * 120.00222 * 179.97438 * 14 13 11 17 17 N 1.31621 * 119.99551 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00167 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47293 * 60.00308 * 18 16 14 20 20 H 1.48503 * 109.47122 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47228 * 299.99672 * 18 16 14 22 22 H 1.09001 * 109.47578 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.47205 * 300.07580 * 1 2 3 24 24 H 1.08998 * 109.47510 * 60.07830 * 1 2 3 25 25 H 1.08994 * 109.46367 * 60.86557 * 4 2 1 26 26 H 1.08992 * 109.45179 * 300.88629 * 4 2 1 27 27 H 1.08992 * 109.47459 * 56.04492 * 6 5 4 28 28 H 1.09004 * 109.47040 * 176.04643 * 6 5 4 29 29 H 1.09000 * 109.47033 * 296.04595 * 6 5 4 30 30 H 1.08995 * 109.46794 * 59.99905 * 9 7 5 31 31 H 1.08996 * 109.46594 * 180.02562 * 9 7 5 32 32 H 1.08995 * 109.46928 * 299.99854 * 9 7 5 33 33 H 1.09000 * 109.50493 * 299.23560 * 10 7 5 34 34 H 1.09004 * 109.49973 * 179.12527 * 10 7 5 35 35 H 0.97004 * 119.99867 * 94.68008 * 13 11 10 36 36 H 0.97004 * 119.99636 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7230 -1.2484 5 7 3.5091 -0.7416 -1.2382 6 6 4.0371 -1.3049 -2.4881 7 6 4.0229 -1.4730 -0.0731 8 1 3.6374 -2.4924 -0.0853 9 6 5.5517 -1.5056 -0.1251 10 6 3.5711 -0.7724 1.2103 11 6 2.0412 -0.7243 1.2484 12 1 1.6443 -1.7392 1.2689 13 7 1.6037 -0.0033 2.4463 14 6 1.4747 -0.6679 3.6366 15 1 1.6951 -1.7237 3.6922 16 6 1.0607 0.0154 4.7718 17 7 0.7925 1.3022 4.7041 18 14 0.8854 -0.8912 6.3956 19 1 2.1969 -1.4697 6.7836 20 1 0.4320 0.0565 7.4452 21 1 -0.1125 -1.9809 6.2490 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5150 0.8894 24 1 -0.3634 0.5126 -0.8906 25 1 1.6904 -0.2015 -2.1390 26 1 1.6647 -1.7459 -1.2549 27 1 3.6444 -0.7420 -3.3348 28 1 5.1253 -1.2426 -2.4836 29 1 3.7333 -2.3483 -2.5732 30 1 5.9374 -0.4862 -0.1133 31 1 5.9331 -2.0488 0.7395 32 1 5.8735 -2.0053 -1.0387 33 1 3.9678 0.2427 1.2298 34 1 3.9396 -1.3242 2.0752 35 1 1.4054 0.9450 2.3963 36 1 0.5036 1.7797 5.4975 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307445667.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:13 Heat of formation + Delta-G solvation = 3.513271 kcal Electronic energy + Delta-G solvation = -14967.720485 eV Core-core repulsion = 12679.559906 eV Total energy + Delta-G solvation = -2288.160579 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.12580 -35.26603 -33.04288 -32.03511 -29.81318 -28.07013 -26.06068 -24.28675 -23.51621 -21.55901 -20.01694 -19.25792 -16.98588 -15.48299 -15.11156 -14.55076 -14.37533 -14.02730 -13.63118 -13.20543 -12.58685 -12.39425 -12.22573 -12.00120 -11.72948 -11.39561 -11.35604 -11.04704 -10.95531 -10.81013 -10.37202 -10.26331 -10.20217 -10.12321 -9.59462 -9.42291 -8.80807 -8.05991 -6.87746 -5.71259 -2.98889 3.46474 3.50958 3.51835 4.14935 4.63059 5.16878 5.22101 5.26638 5.36652 5.55922 5.58812 5.63679 5.70374 5.75605 5.84074 5.92507 6.03482 6.05226 6.08980 6.18060 6.29545 6.34228 6.50816 6.55383 6.67934 6.70629 6.90346 6.96026 7.21576 7.40634 7.43250 7.74147 8.47730 9.58632 10.18054 10.53430 11.51478 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040927 B = 0.008329 C = 0.007346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.983893 B = 3361.103904 C = 3810.485527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 H 0.074 0.926 4 C 0.067 3.933 5 N -0.538 5.538 6 C 0.023 3.977 7 C 0.082 3.918 8 H 0.033 0.967 9 C -0.145 4.145 10 C -0.126 4.126 11 C 0.183 3.817 12 H 0.040 0.960 13 N -0.721 5.721 14 C -0.235 4.235 15 H 0.068 0.932 16 C -0.014 4.014 17 N -0.934 5.934 18 Si 0.904 3.096 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.287 1.287 22 H 0.046 0.954 23 H 0.071 0.929 24 H 0.040 0.960 25 H 0.068 0.932 26 H 0.028 0.972 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.019 0.981 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.384 0.616 36 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.867 -4.765 -12.562 14.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 H 0.092 0.908 4 C -0.061 4.061 5 N -0.263 5.263 6 C -0.126 4.126 7 C -0.027 4.027 8 H 0.051 0.949 9 C -0.203 4.203 10 C -0.167 4.167 11 C 0.073 3.927 12 H 0.058 0.942 13 N -0.361 5.361 14 C -0.366 4.366 15 H 0.086 0.914 16 C -0.210 4.210 17 N -0.582 5.582 18 Si 0.736 3.264 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.214 1.214 22 H 0.065 0.935 23 H 0.090 0.910 24 H 0.060 0.940 25 H 0.086 0.914 26 H 0.046 0.954 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.037 0.963 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.218 0.782 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.000 -4.395 -12.358 14.037 hybrid contribution -0.383 -1.035 0.863 1.401 sum 4.617 -5.430 -11.496 13.526 Atomic orbital electron populations 1.21694 0.94943 1.01303 1.01561 1.21403 0.95462 1.00368 0.94111 0.90764 1.22109 0.86667 0.98671 0.98685 1.61943 1.08289 1.54142 1.01946 1.22393 1.00822 0.97028 0.92325 1.21692 0.94594 0.94978 0.91427 0.94865 1.21912 0.95162 1.02251 1.00960 1.22359 0.99658 1.00610 0.94063 1.20260 0.91179 0.94854 0.86446 0.94161 1.42387 1.79950 1.09448 1.04311 1.19189 1.37530 0.93160 0.86769 0.91443 1.24711 1.02605 0.95813 0.97876 1.69654 1.52605 1.07250 1.28718 0.86306 0.77742 0.78456 0.83919 1.21382 1.21740 1.21401 0.93531 0.90986 0.94044 0.91383 0.95362 0.91930 0.91258 0.96266 0.91922 0.92360 0.93193 0.91737 0.91832 0.78222 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.06 37.16 0.34 -2.00 16 2 C -0.09 -1.65 2.44 -90.54 -0.22 -1.87 16 3 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 4 C 0.07 1.00 4.75 -3.83 -0.02 0.99 16 5 N -0.54 -7.99 4.75 -234.92 -1.12 -9.10 16 6 C 0.02 0.27 9.06 60.07 0.54 0.81 16 7 C 0.08 1.27 2.44 -67.72 -0.17 1.11 16 8 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 9 C -0.15 -1.91 8.77 37.16 0.33 -1.59 16 10 C -0.13 -2.38 4.96 -26.65 -0.13 -2.52 16 11 C 0.18 3.75 2.26 -67.81 -0.15 3.60 16 12 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 13 N -0.72 -18.20 4.50 -53.31 -0.24 -18.44 16 14 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 15 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 16 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 17 N -0.93 -28.38 13.06 55.49 0.72 -27.66 16 18 Si 0.90 22.61 29.55 -169.99 -5.02 17.59 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.07 1.42 7.63 -51.92 -0.40 1.02 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 26 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.67 8.10 -51.93 -0.42 0.24 16 28 H 0.07 0.75 6.20 -51.93 -0.32 0.43 16 29 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.57 6.32 -51.93 -0.33 0.24 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.38 10.35 7.73 -40.82 -0.32 10.03 16 36 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 282.05 15.07 4.25 4.25 Total: -1.00 -29.43 282.05 -7.53 -36.96 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.40 Total: 5.09 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 0.27 Total: -8.69 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.63 Total: -55.20 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.43 -7.53 -36.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307445667.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.471 kcal (2) G-P(sol) polarization free energy of solvation -29.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds