Wall clock time and date at job start Mon Mar 30 2020 02:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.50142 * 2 1 4 4 C 1.53044 * 109.49948 * 239.92443 * 2 1 3 5 5 N 1.46848 * 109.51792 * 180.87894 * 4 2 1 6 6 C 1.46906 * 110.99535 * 185.83763 * 5 4 2 7 7 C 1.46850 * 111.19941 * 61.74375 * 5 4 2 8 8 H 1.08994 * 109.46358 * 58.26863 * 7 5 4 9 9 C 1.53005 * 109.46084 * 178.23889 * 7 5 4 10 10 C 1.53036 * 109.52003 * 298.25338 * 7 5 4 11 11 C 1.53117 * 109.28029 * 59.18340 * 10 7 5 12 12 H 1.08997 * 109.57814 * 62.28010 * 11 10 7 13 13 N 1.46502 * 109.52436 * 182.44014 * 11 10 7 14 14 C 1.36928 * 119.99860 * 274.68001 * 13 11 10 15 15 H 1.08001 * 120.00326 * 359.97438 * 14 13 11 16 16 C 1.38815 * 120.00222 * 179.97438 * 14 13 11 17 17 N 1.31621 * 119.99551 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00167 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47293 * 60.00308 * 18 16 14 20 20 H 1.48503 * 109.47122 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47228 * 299.99672 * 18 16 14 22 22 H 1.09001 * 109.47578 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.47205 * 300.07580 * 1 2 3 24 24 H 1.08998 * 109.47510 * 60.07830 * 1 2 3 25 25 H 1.08994 * 109.46367 * 60.86557 * 4 2 1 26 26 H 1.08992 * 109.45179 * 300.88629 * 4 2 1 27 27 H 1.08992 * 109.47459 * 56.04492 * 6 5 4 28 28 H 1.09004 * 109.47040 * 176.04643 * 6 5 4 29 29 H 1.09000 * 109.47033 * 296.04595 * 6 5 4 30 30 H 1.08995 * 109.46794 * 59.99905 * 9 7 5 31 31 H 1.08996 * 109.46594 * 180.02562 * 9 7 5 32 32 H 1.08995 * 109.46928 * 299.99854 * 9 7 5 33 33 H 1.09000 * 109.50493 * 299.23560 * 10 7 5 34 34 H 1.09004 * 109.49973 * 179.12527 * 10 7 5 35 35 H 0.97004 * 119.99867 * 94.68008 * 13 11 10 36 36 H 0.97004 * 119.99636 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7230 -1.2484 5 7 3.5091 -0.7416 -1.2382 6 6 4.0371 -1.3049 -2.4881 7 6 4.0229 -1.4730 -0.0731 8 1 3.6374 -2.4924 -0.0853 9 6 5.5517 -1.5056 -0.1251 10 6 3.5711 -0.7724 1.2103 11 6 2.0412 -0.7243 1.2484 12 1 1.6443 -1.7392 1.2689 13 7 1.6037 -0.0033 2.4463 14 6 1.4747 -0.6679 3.6366 15 1 1.6951 -1.7237 3.6922 16 6 1.0607 0.0154 4.7718 17 7 0.7925 1.3022 4.7041 18 14 0.8854 -0.8912 6.3956 19 1 2.1969 -1.4697 6.7836 20 1 0.4320 0.0565 7.4452 21 1 -0.1125 -1.9809 6.2490 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5150 0.8894 24 1 -0.3634 0.5126 -0.8906 25 1 1.6904 -0.2015 -2.1390 26 1 1.6647 -1.7459 -1.2549 27 1 3.6444 -0.7420 -3.3348 28 1 5.1253 -1.2426 -2.4836 29 1 3.7333 -2.3483 -2.5732 30 1 5.9374 -0.4862 -0.1133 31 1 5.9331 -2.0488 0.7395 32 1 5.8735 -2.0053 -1.0387 33 1 3.9678 0.2427 1.2298 34 1 3.9396 -1.3242 2.0752 35 1 1.4054 0.9450 2.3963 36 1 0.5036 1.7797 5.4975 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307445667.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:13 Heat of formation + Delta-G solvation = -16.114632 kcal Electronic energy + Delta-G solvation = -14968.571615 eV Core-core repulsion = 12679.559906 eV Total energy + Delta-G solvation = -2289.011709 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.47024 -36.87574 -34.72121 -33.58747 -31.59389 -29.41731 -27.44203 -25.82456 -25.08014 -23.12586 -21.37502 -20.74043 -19.04618 -16.90140 -16.57802 -16.12223 -15.64566 -15.52430 -15.35632 -14.78265 -14.09710 -13.76964 -13.72046 -13.15749 -12.96924 -12.87578 -12.75613 -12.63035 -12.57619 -12.31085 -12.20310 -11.97432 -11.79550 -11.66086 -11.33686 -11.01849 -10.80963 -9.19919 -8.95761 -7.92147 -5.19692 1.45958 1.48821 1.54920 2.56747 3.01262 3.40043 3.78579 3.90215 4.04065 4.09844 4.24137 4.41445 4.52979 4.60518 4.64633 4.68339 4.70904 4.82252 4.83956 4.92854 5.01351 5.05541 5.06930 5.16403 5.25443 5.37146 5.41713 5.44627 5.51365 5.64268 6.21665 6.27221 6.31188 7.35602 8.12709 8.37163 9.31285 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040927 B = 0.008329 C = 0.007346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.983893 B = 3361.103904 C = 3810.485527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.087 4.087 3 H 0.060 0.940 4 C 0.074 3.926 5 N -0.551 5.551 6 C 0.023 3.977 7 C 0.087 3.913 8 H 0.033 0.967 9 C -0.140 4.140 10 C -0.117 4.117 11 C 0.178 3.822 12 H 0.030 0.970 13 N -0.731 5.731 14 C -0.237 4.237 15 H 0.071 0.929 16 C -0.076 4.076 17 N -0.970 5.970 18 Si 0.970 3.030 19 H -0.280 1.280 20 H -0.295 1.295 21 H -0.279 1.279 22 H 0.049 0.951 23 H 0.036 0.964 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.032 0.968 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.026 0.974 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.044 0.956 35 H 0.372 0.628 36 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.527 -6.026 -14.224 16.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.107 4.107 3 H 0.079 0.921 4 C -0.055 4.055 5 N -0.276 5.276 6 C -0.125 4.125 7 C -0.021 4.021 8 H 0.051 0.949 9 C -0.197 4.197 10 C -0.158 4.158 11 C 0.069 3.931 12 H 0.049 0.951 13 N -0.370 5.370 14 C -0.368 4.368 15 H 0.088 0.912 16 C -0.268 4.268 17 N -0.621 5.621 18 Si 0.799 3.201 19 H -0.206 1.206 20 H -0.221 1.221 21 H -0.205 1.205 22 H 0.068 0.932 23 H 0.055 0.945 24 H 0.090 0.910 25 H 0.110 0.890 26 H 0.050 0.950 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.204 0.796 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.683 -5.696 -14.064 16.203 hybrid contribution -0.574 -0.655 1.305 1.569 sum 5.108 -6.351 -12.759 15.140 Atomic orbital electron populations 1.21609 0.94538 1.01382 1.01292 1.21310 0.95797 0.99522 0.94067 0.92120 1.22039 0.87035 0.98681 0.97722 1.61918 1.08100 1.54676 1.02916 1.22478 1.01523 0.97536 0.90950 1.21569 0.96264 0.94269 0.90042 0.94865 1.21863 0.93096 1.02350 1.02397 1.22160 0.98050 0.99795 0.95780 1.20483 0.92263 0.94132 0.86212 0.95148 1.42554 1.80262 1.09011 1.05203 1.19541 1.36067 0.93390 0.87851 0.91153 1.25503 1.03341 0.96652 1.01272 1.69816 1.54278 1.08748 1.29226 0.85267 0.77929 0.77262 0.79663 1.20581 1.22137 1.20515 0.93212 0.94493 0.91027 0.88996 0.94956 0.90392 0.90111 0.95505 0.92426 0.92150 0.90686 0.93438 0.93689 0.79635 0.94113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 9.06 71.98 0.65 -3.70 16 2 C -0.09 -3.02 2.44 -10.74 -0.03 -3.04 16 3 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 4 C 0.07 2.01 4.75 86.33 0.41 2.42 16 5 N -0.55 -14.90 4.75 -897.16 -4.26 -19.16 16 6 C 0.02 0.45 9.06 127.69 1.16 1.60 16 7 C 0.09 2.57 2.44 44.94 0.11 2.68 16 8 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 9 C -0.14 -3.36 8.77 71.98 0.63 -2.72 16 10 C -0.12 -4.46 4.96 30.65 0.15 -4.31 16 11 C 0.18 7.37 2.26 45.07 0.10 7.48 16 12 H 0.03 1.32 8.08 -2.39 -0.02 1.30 16 13 N -0.73 -38.01 4.50 -322.57 -1.45 -39.46 16 14 C -0.24 -13.45 9.93 84.04 0.83 -12.62 16 15 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 16 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 17 N -0.97 -60.48 13.06 21.65 0.28 -60.19 16 18 Si 0.97 47.04 29.55 68.60 2.03 49.07 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 21 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 22 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.04 1.48 7.63 -2.38 -0.02 1.46 16 24 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.09 2.13 8.09 -2.39 -0.02 2.11 16 26 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.08 1.33 8.10 -2.39 -0.02 1.31 16 28 H 0.08 1.42 6.20 -2.38 -0.01 1.40 16 29 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 1.44 6.32 -2.39 -0.02 1.42 16 33 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.37 20.87 7.73 -92.71 -0.72 20.15 16 36 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -63.73 282.05 1.40 -62.33 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.31 Total: 23.58 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 4.49 Total: -16.16 kcal Atomic # 7 Polarization: -113.39 SS G_CDS: -5.43 Total: -118.81 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -63.73 1.40 -62.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307445667.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.214 kcal (2) G-P(sol) polarization free energy of solvation -63.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds