Wall clock time and date at job start Mon Mar 30 2020 02:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.53636 * 2 1 4 4 C 1.53035 * 109.50305 * 239.89411 * 2 1 3 5 5 N 1.46845 * 109.52148 * 180.88193 * 4 2 1 6 6 C 1.46903 * 110.99947 * 185.84318 * 5 4 2 7 7 C 1.46844 * 111.20130 * 61.74514 * 5 4 2 8 8 H 1.09000 * 109.46445 * 178.24378 * 7 5 4 9 9 C 1.52998 * 109.46255 * 58.27365 * 7 5 4 10 10 C 1.53037 * 109.52347 * 298.25883 * 7 5 4 11 11 C 1.53120 * 109.27708 * 59.17579 * 10 7 5 12 12 H 1.08997 * 109.52319 * 62.31872 * 11 10 7 13 13 N 1.46506 * 109.52411 * 182.44333 * 11 10 7 14 14 C 1.36938 * 119.99589 * 275.00295 * 13 11 10 15 15 H 1.07999 * 120.00325 * 359.97438 * 14 13 11 16 16 C 1.38815 * 119.99408 * 179.97438 * 14 13 11 17 17 N 1.31617 * 120.00325 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99550 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47349 * 59.99998 * 18 16 14 20 20 H 1.48505 * 109.47077 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47093 * 299.99919 * 18 16 14 22 22 H 1.08992 * 109.47241 * 299.90292 * 1 2 3 23 23 H 1.08996 * 109.47011 * 59.90735 * 1 2 3 24 24 H 1.09004 * 109.47146 * 179.90363 * 1 2 3 25 25 H 1.09002 * 109.46358 * 60.86540 * 4 2 1 26 26 H 1.08997 * 109.45812 * 300.89125 * 4 2 1 27 27 H 1.08997 * 109.46943 * 295.78720 * 6 5 4 28 28 H 1.08997 * 109.47355 * 55.78960 * 6 5 4 29 29 H 1.08997 * 109.46916 * 175.78574 * 6 5 4 30 30 H 1.09003 * 109.47136 * 299.95211 * 9 7 5 31 31 H 1.09000 * 109.47371 * 59.94550 * 9 7 5 32 32 H 1.08994 * 109.47202 * 179.97438 * 9 7 5 33 33 H 1.09003 * 109.50446 * 299.23863 * 10 7 5 34 34 H 1.08995 * 109.50460 * 179.11959 * 10 7 5 35 35 H 0.96995 * 120.00050 * 94.72502 * 13 11 10 36 36 H 0.97000 * 119.99693 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0410 -0.7236 -1.2479 5 7 3.5092 -0.7423 -1.2377 6 6 4.0373 -1.3061 -2.4872 7 6 4.0229 -1.4731 -0.0722 8 1 5.1121 -1.4963 -0.1092 9 6 3.4819 -2.9041 -0.0888 10 6 3.5711 -0.7720 1.2109 11 6 2.0412 -0.7238 1.2488 12 1 1.6452 -1.7391 1.2703 13 7 1.6035 -0.0022 2.4464 14 6 1.4808 -0.6650 3.6384 15 1 1.7062 -1.7197 3.6956 16 6 1.0666 0.0188 4.7732 17 7 0.7915 1.3040 4.7034 18 14 0.8985 -0.8854 6.3991 19 1 2.2129 -1.4583 6.7852 20 1 0.4437 0.0625 7.4479 21 1 -0.0956 -1.9793 6.2566 22 1 -0.3633 0.5123 0.8908 23 1 -0.3633 0.5153 -0.8891 24 1 -0.3634 -1.0277 -0.0017 25 1 1.6906 -0.2025 -2.1389 26 1 1.6648 -1.7466 -1.2540 27 1 3.7373 -2.3508 -2.5697 28 1 3.6411 -0.7464 -3.3344 29 1 5.1252 -1.2395 -2.4847 30 1 2.3927 -2.8812 -0.0514 31 1 3.8035 -3.4036 -1.0026 32 1 3.8634 -3.4468 0.7760 33 1 3.9677 0.2432 1.2299 34 1 3.9395 -1.3234 2.0759 35 1 1.4046 0.9458 2.3958 36 1 0.5024 1.7819 5.4965 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307445668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:16 Heat of formation + Delta-G solvation = 6.627360 kcal Electronic energy + Delta-G solvation = -15126.706197 eV Core-core repulsion = 12838.680655 eV Total energy + Delta-G solvation = -2288.025542 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.43126 -35.17965 -32.83712 -31.96959 -29.83106 -27.46256 -26.38048 -24.84874 -23.51984 -21.51988 -20.59448 -18.33847 -16.92757 -15.81898 -15.02321 -14.65514 -14.14097 -13.88700 -13.62608 -13.12125 -12.84361 -12.41560 -12.22582 -12.02999 -11.83403 -11.52543 -11.29031 -10.97613 -10.93900 -10.79478 -10.39169 -10.29694 -10.15560 -10.04484 -9.58380 -9.39339 -8.78746 -8.00987 -6.86758 -5.70915 -2.98440 3.46484 3.51025 3.51875 4.19740 4.63450 5.16954 5.17297 5.33961 5.42399 5.48509 5.55473 5.65705 5.69372 5.77743 5.88332 5.91865 5.95738 6.00568 6.13103 6.19640 6.26996 6.39542 6.50194 6.57263 6.70556 6.74051 6.91060 6.96953 7.21845 7.41314 7.43493 7.74391 8.48191 9.59014 10.18866 10.53953 11.51849 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044827 B = 0.008443 C = 0.007700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.475199 B = 3315.410520 C = 3635.289100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 H 0.073 0.927 4 C 0.062 3.938 5 N -0.537 5.537 6 C 0.023 3.977 7 C 0.082 3.918 8 H 0.071 0.929 9 C -0.187 4.187 10 C -0.127 4.127 11 C 0.183 3.817 12 H 0.044 0.956 13 N -0.722 5.722 14 C -0.234 4.234 15 H 0.067 0.933 16 C -0.014 4.014 17 N -0.934 5.934 18 Si 0.904 3.096 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.287 1.287 22 H 0.071 0.929 23 H 0.040 0.960 24 H 0.045 0.955 25 H 0.066 0.934 26 H 0.034 0.966 27 H 0.024 0.976 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.383 0.617 36 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.983 -5.372 -12.542 14.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 H 0.092 0.908 4 C -0.066 4.066 5 N -0.260 5.260 6 C -0.125 4.125 7 C -0.027 4.027 8 H 0.090 0.910 9 C -0.245 4.245 10 C -0.168 4.168 11 C 0.073 3.927 12 H 0.062 0.938 13 N -0.362 5.362 14 C -0.366 4.366 15 H 0.085 0.915 16 C -0.210 4.210 17 N -0.582 5.582 18 Si 0.735 3.265 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.214 1.214 22 H 0.090 0.910 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.084 0.916 26 H 0.052 0.948 27 H 0.042 0.958 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.217 0.783 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.114 -4.992 -12.348 13.940 hybrid contribution -0.331 -1.044 0.872 1.400 sum 3.783 -6.035 -11.476 13.506 Atomic orbital electron populations 1.21696 0.94994 1.01260 1.01576 1.21396 0.95412 1.00356 0.94183 0.90845 1.22146 0.86938 0.98924 0.98576 1.62142 1.08479 1.53388 1.01993 1.22349 1.00326 0.97427 0.92401 1.21730 0.98506 0.91004 0.91412 0.91035 1.22484 1.02543 0.98234 1.01260 1.22320 0.99992 1.00379 0.94133 1.20293 0.91110 0.94942 0.86346 0.93772 1.42408 1.79979 1.09529 1.04264 1.19183 1.37453 0.93257 0.86689 0.91453 1.24707 1.02620 0.95823 0.97860 1.69649 1.52532 1.07349 1.28700 0.86316 0.77729 0.78455 0.83980 1.21393 1.21747 1.21410 0.90988 0.94052 0.93562 0.91583 0.94771 0.95759 0.91923 0.91835 0.91705 0.93442 0.92103 0.91855 0.91810 0.78269 0.93557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.06 37.16 0.34 -1.99 16 2 C -0.09 -1.64 2.45 -90.54 -0.22 -1.86 16 3 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 4 C 0.06 0.92 4.45 -3.84 -0.02 0.91 16 5 N -0.54 -7.88 4.86 -234.94 -1.14 -9.02 16 6 C 0.02 0.27 9.32 60.07 0.56 0.83 16 7 C 0.08 1.26 2.93 -67.73 -0.20 1.06 16 8 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 9 C -0.19 -2.62 8.18 37.16 0.30 -2.32 16 10 C -0.13 -2.39 5.20 -26.65 -0.14 -2.53 16 11 C 0.18 3.71 1.95 -67.80 -0.13 3.57 16 12 H 0.04 0.93 6.50 -51.93 -0.34 0.59 16 13 N -0.72 -18.14 4.49 -53.30 -0.24 -18.38 16 14 C -0.23 -6.52 9.93 -15.06 -0.15 -6.67 16 15 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 16 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 17 N -0.93 -28.36 13.06 55.49 0.72 -27.63 16 18 Si 0.90 22.58 29.55 -169.99 -5.02 17.56 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H 0.07 1.42 7.62 -51.93 -0.40 1.02 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 26 H 0.03 0.50 6.19 -51.93 -0.32 0.18 16 27 H 0.02 0.27 6.46 -51.93 -0.34 -0.07 16 28 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.98 4.80 -51.93 -0.25 0.73 16 31 H 0.05 0.58 6.54 -51.93 -0.34 0.24 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.38 10.32 7.73 -40.82 -0.32 10.00 16 36 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 275.52 15.07 4.15 4.15 Total: -1.00 -29.31 275.52 -7.34 -36.65 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.06 Total: 6.17 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 0.25 Total: -9.51 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.66 Total: -55.03 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.31 -7.34 -36.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307445668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.276 kcal (2) G-P(sol) polarization free energy of solvation -29.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds