Wall clock time and date at job start Mon Mar 30 2020 02:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.53636 * 2 1 4 4 C 1.53035 * 109.50305 * 239.89411 * 2 1 3 5 5 N 1.46845 * 109.52148 * 180.88193 * 4 2 1 6 6 C 1.46903 * 110.99947 * 185.84318 * 5 4 2 7 7 C 1.46844 * 111.20130 * 61.74514 * 5 4 2 8 8 H 1.09000 * 109.46445 * 178.24378 * 7 5 4 9 9 C 1.52998 * 109.46255 * 58.27365 * 7 5 4 10 10 C 1.53037 * 109.52347 * 298.25883 * 7 5 4 11 11 C 1.53120 * 109.27708 * 59.17579 * 10 7 5 12 12 H 1.08997 * 109.52319 * 62.31872 * 11 10 7 13 13 N 1.46506 * 109.52411 * 182.44333 * 11 10 7 14 14 C 1.36938 * 119.99589 * 275.00295 * 13 11 10 15 15 H 1.07999 * 120.00325 * 359.97438 * 14 13 11 16 16 C 1.38815 * 119.99408 * 179.97438 * 14 13 11 17 17 N 1.31617 * 120.00325 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99550 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47349 * 59.99998 * 18 16 14 20 20 H 1.48505 * 109.47077 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47093 * 299.99919 * 18 16 14 22 22 H 1.08992 * 109.47241 * 299.90292 * 1 2 3 23 23 H 1.08996 * 109.47011 * 59.90735 * 1 2 3 24 24 H 1.09004 * 109.47146 * 179.90363 * 1 2 3 25 25 H 1.09002 * 109.46358 * 60.86540 * 4 2 1 26 26 H 1.08997 * 109.45812 * 300.89125 * 4 2 1 27 27 H 1.08997 * 109.46943 * 295.78720 * 6 5 4 28 28 H 1.08997 * 109.47355 * 55.78960 * 6 5 4 29 29 H 1.08997 * 109.46916 * 175.78574 * 6 5 4 30 30 H 1.09003 * 109.47136 * 299.95211 * 9 7 5 31 31 H 1.09000 * 109.47371 * 59.94550 * 9 7 5 32 32 H 1.08994 * 109.47202 * 179.97438 * 9 7 5 33 33 H 1.09003 * 109.50446 * 299.23863 * 10 7 5 34 34 H 1.08995 * 109.50460 * 179.11959 * 10 7 5 35 35 H 0.96995 * 120.00050 * 94.72502 * 13 11 10 36 36 H 0.97000 * 119.99693 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0410 -0.7236 -1.2479 5 7 3.5092 -0.7423 -1.2377 6 6 4.0373 -1.3061 -2.4872 7 6 4.0229 -1.4731 -0.0722 8 1 5.1121 -1.4963 -0.1092 9 6 3.4819 -2.9041 -0.0888 10 6 3.5711 -0.7720 1.2109 11 6 2.0412 -0.7238 1.2488 12 1 1.6452 -1.7391 1.2703 13 7 1.6035 -0.0022 2.4464 14 6 1.4808 -0.6650 3.6384 15 1 1.7062 -1.7197 3.6956 16 6 1.0666 0.0188 4.7732 17 7 0.7915 1.3040 4.7034 18 14 0.8985 -0.8854 6.3991 19 1 2.2129 -1.4583 6.7852 20 1 0.4437 0.0625 7.4479 21 1 -0.0956 -1.9793 6.2566 22 1 -0.3633 0.5123 0.8908 23 1 -0.3633 0.5153 -0.8891 24 1 -0.3634 -1.0277 -0.0017 25 1 1.6906 -0.2025 -2.1389 26 1 1.6648 -1.7466 -1.2540 27 1 3.7373 -2.3508 -2.5697 28 1 3.6411 -0.7464 -3.3344 29 1 5.1252 -1.2395 -2.4847 30 1 2.3927 -2.8812 -0.0514 31 1 3.8035 -3.4036 -1.0026 32 1 3.8634 -3.4468 0.7760 33 1 3.9677 0.2432 1.2299 34 1 3.9395 -1.3234 2.0759 35 1 1.4046 0.9458 2.3958 36 1 0.5024 1.7819 5.4965 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307445668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:16 Heat of formation + Delta-G solvation = -13.157438 kcal Electronic energy + Delta-G solvation = -15127.564130 eV Core-core repulsion = 12838.680655 eV Total energy + Delta-G solvation = -2288.883475 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.75541 -36.80773 -34.56249 -33.45198 -31.60651 -28.84433 -27.64389 -26.35142 -25.18660 -23.07365 -21.99428 -19.82628 -18.89421 -17.27190 -16.42786 -16.13588 -15.65772 -15.47909 -15.05024 -14.65198 -14.34273 -13.98654 -13.51999 -13.30688 -12.98400 -12.95697 -12.82374 -12.71402 -12.49801 -12.20573 -12.17919 -12.01903 -11.77010 -11.54781 -11.38773 -10.94215 -10.77389 -9.11784 -8.93725 -7.91128 -5.18362 1.46280 1.49060 1.55106 2.57489 3.07358 3.41298 3.81249 3.91214 4.00955 4.17807 4.31022 4.35874 4.50812 4.54268 4.64044 4.68419 4.73563 4.81186 4.83215 4.91236 5.04481 5.05260 5.12129 5.16244 5.26936 5.35710 5.44407 5.46642 5.52976 5.66876 6.23807 6.28867 6.32682 7.36666 8.14771 8.38423 9.32419 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044827 B = 0.008443 C = 0.007700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.475199 B = 3315.410520 C = 3635.289100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.088 4.088 3 H 0.057 0.943 4 C 0.070 3.930 5 N -0.551 5.551 6 C 0.024 3.976 7 C 0.089 3.911 8 H 0.085 0.915 9 C -0.181 4.181 10 C -0.120 4.120 11 C 0.180 3.820 12 H 0.039 0.961 13 N -0.733 5.733 14 C -0.234 4.234 15 H 0.071 0.929 16 C -0.077 4.077 17 N -0.970 5.970 18 Si 0.969 3.031 19 H -0.280 1.280 20 H -0.296 1.296 21 H -0.279 1.279 22 H 0.035 0.965 23 H 0.070 0.930 24 H 0.050 0.950 25 H 0.087 0.913 26 H 0.041 0.959 27 H 0.034 0.966 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.043 0.957 34 H 0.045 0.955 35 H 0.371 0.629 36 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.521 -6.848 -14.229 16.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.108 4.108 3 H 0.076 0.924 4 C -0.058 4.058 5 N -0.275 5.275 6 C -0.124 4.124 7 C -0.020 4.020 8 H 0.103 0.897 9 C -0.239 4.239 10 C -0.161 4.161 11 C 0.072 3.928 12 H 0.056 0.944 13 N -0.372 5.372 14 C -0.366 4.366 15 H 0.089 0.911 16 C -0.269 4.269 17 N -0.621 5.621 18 Si 0.798 3.202 19 H -0.206 1.206 20 H -0.222 1.222 21 H -0.205 1.205 22 H 0.055 0.945 23 H 0.089 0.911 24 H 0.069 0.931 25 H 0.106 0.894 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.202 0.798 36 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.675 -6.509 -14.078 16.199 hybrid contribution -0.468 -0.590 1.319 1.519 sum 4.207 -7.098 -12.758 15.194 Atomic orbital electron populations 1.21612 0.94623 1.01408 1.01220 1.21312 0.95726 0.99456 0.94304 0.92416 1.22060 0.87262 0.99044 0.97464 1.62099 1.08302 1.54077 1.02984 1.22425 1.00936 0.98028 0.90995 1.21595 0.99248 0.91265 0.89890 0.89708 1.22414 1.01631 0.97409 1.02463 1.22137 0.98502 0.99511 0.95941 1.20492 0.92046 0.94360 0.85916 0.94350 1.42596 1.80266 1.09090 1.05220 1.19542 1.35826 0.93500 0.87743 0.91071 1.25495 1.03444 0.96651 1.01265 1.69813 1.54299 1.08861 1.29175 0.85282 0.77915 0.77263 0.79751 1.20605 1.22226 1.20504 0.94545 0.91148 0.93109 0.89425 0.94091 0.94770 0.90513 0.90852 0.92878 0.91016 0.92293 0.93793 0.93613 0.79760 0.94164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.34 9.06 71.98 0.65 -3.69 16 2 C -0.09 -3.03 2.45 -10.74 -0.03 -3.05 16 3 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 4 C 0.07 1.88 4.45 86.33 0.38 2.27 16 5 N -0.55 -14.65 4.86 -897.20 -4.36 -19.01 16 6 C 0.02 0.46 9.32 127.69 1.19 1.65 16 7 C 0.09 2.55 2.93 44.94 0.13 2.68 16 8 H 0.08 2.23 8.12 -2.39 -0.02 2.21 16 9 C -0.18 -4.62 8.18 71.98 0.59 -4.03 16 10 C -0.12 -4.52 5.20 30.65 0.16 -4.36 16 11 C 0.18 7.34 1.95 45.07 0.09 7.43 16 12 H 0.04 1.61 6.50 -2.39 -0.02 1.60 16 13 N -0.73 -37.86 4.49 -322.54 -1.45 -39.31 16 14 C -0.23 -13.23 9.93 84.03 0.83 -12.40 16 15 H 0.07 3.89 7.83 -2.91 -0.02 3.86 16 16 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 17 N -0.97 -60.52 13.06 21.65 0.28 -60.24 16 18 Si 0.97 46.98 29.55 68.60 2.03 49.00 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 20 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 22 H 0.04 1.45 7.62 -2.39 -0.02 1.43 16 23 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 25 H 0.09 2.03 8.09 -2.39 -0.02 2.01 16 26 H 0.04 1.07 6.19 -2.39 -0.01 1.05 16 27 H 0.03 0.61 6.46 -2.39 -0.02 0.59 16 28 H 0.08 1.29 8.09 -2.39 -0.02 1.28 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.05 1.48 4.80 -2.39 -0.01 1.47 16 31 H 0.07 1.50 6.54 -2.39 -0.02 1.48 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.37 20.78 7.73 -92.71 -0.72 20.07 16 36 H 0.25 15.15 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -63.42 275.52 1.30 -62.13 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.33 Total: 24.96 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 4.47 Total: -17.53 kcal Atomic # 7 Polarization: -113.04 SS G_CDS: -5.53 Total: -118.56 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.00 kcal Total: -63.42 1.30 -62.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307445668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.970 kcal (2) G-P(sol) polarization free energy of solvation -63.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds