Wall clock time and date at job start Mon Mar 30 2020 02:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.53990 * 2 1 4 4 C 1.53036 * 109.50360 * 239.89794 * 2 1 3 5 5 N 1.46849 * 109.52202 * 180.88316 * 4 2 1 6 6 C 1.46903 * 110.99864 * 185.83868 * 5 4 2 7 7 C 1.46843 * 111.19807 * 61.74408 * 5 4 2 8 8 H 1.08998 * 109.46716 * 58.27320 * 7 5 4 9 9 C 1.53005 * 109.46186 * 178.24050 * 7 5 4 10 10 C 1.53035 * 109.52388 * 298.25514 * 7 5 4 11 11 C 1.53120 * 109.27931 * 59.18220 * 10 7 5 12 12 H 1.08992 * 109.57693 * 182.41154 * 11 10 7 13 13 N 1.46499 * 109.52270 * 62.24977 * 11 10 7 14 14 C 1.36931 * 120.00122 * 85.32019 * 13 11 10 15 15 H 1.08002 * 120.00098 * 0.02562 * 14 13 11 16 16 C 1.38812 * 120.00429 * 180.02562 * 14 13 11 17 17 N 1.31624 * 119.99535 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00187 * 180.27849 * 16 14 13 19 19 H 1.48497 * 109.47173 * 179.72427 * 18 16 14 20 20 H 1.48506 * 109.46866 * 299.71963 * 18 16 14 21 21 H 1.48501 * 109.47438 * 59.72083 * 18 16 14 22 22 H 1.08999 * 109.47039 * 299.90865 * 1 2 3 23 23 H 1.09004 * 109.46823 * 59.90054 * 1 2 3 24 24 H 1.08999 * 109.47461 * 179.90045 * 1 2 3 25 25 H 1.09005 * 109.46194 * 300.89415 * 4 2 1 26 26 H 1.08996 * 109.46330 * 60.86462 * 4 2 1 27 27 H 1.08999 * 109.46807 * 63.95238 * 6 5 4 28 28 H 1.08994 * 109.47306 * 183.95520 * 6 5 4 29 29 H 1.08999 * 109.47122 * 303.95437 * 6 5 4 30 30 H 1.08998 * 109.47124 * 60.00171 * 9 7 5 31 31 H 1.08998 * 109.47045 * 179.97438 * 9 7 5 32 32 H 1.08998 * 109.47342 * 299.99843 * 9 7 5 33 33 H 1.09003 * 109.50307 * 299.24089 * 10 7 5 34 34 H 1.08998 * 109.50539 * 179.12142 * 10 7 5 35 35 H 0.97001 * 119.99790 * 265.31536 * 13 11 10 36 36 H 0.97005 * 119.99717 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0410 -0.7235 -1.2480 5 7 3.5093 -0.7422 -1.2378 6 6 4.0373 -1.3061 -2.4873 7 6 4.0229 -1.4731 -0.0723 8 1 3.6374 -2.4926 -0.0841 9 6 5.5517 -1.5058 -0.1242 10 6 3.5711 -0.7720 1.2108 11 6 2.0412 -0.7238 1.2488 12 1 1.7147 -0.1876 2.1398 13 7 1.5089 -2.0884 1.2761 14 6 1.3800 -2.7494 2.4683 15 1 1.6703 -2.2646 3.3887 16 6 0.8761 -4.0426 2.4942 17 7 0.5218 -4.6333 1.3725 18 14 0.6930 -4.9413 4.1214 19 1 0.1307 -6.2942 3.8792 20 1 2.0231 -5.0670 4.7699 21 1 -0.2202 -4.1773 5.0089 22 1 -0.3633 0.5124 0.8908 23 1 -0.3633 0.5154 -0.8891 24 1 -0.3634 -1.0276 -0.0018 25 1 1.6648 -1.7466 -1.2543 26 1 1.6906 -0.2024 -2.1389 27 1 3.7602 -0.6622 -3.3220 28 1 5.1234 -1.3733 -2.4252 29 1 3.6200 -2.3011 -2.6418 30 1 5.9375 -0.4864 -0.1128 31 1 5.9331 -2.0479 0.7411 32 1 5.8737 -2.0060 -1.0375 33 1 3.9678 0.2431 1.2299 34 1 3.9394 -1.3235 2.0759 35 1 1.2477 -2.5237 0.4495 36 1 0.1694 -5.5369 1.3906 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307445669.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:19 Heat of formation + Delta-G solvation = 6.926383 kcal Electronic energy + Delta-G solvation = -15305.711871 eV Core-core repulsion = 13017.699296 eV Total energy + Delta-G solvation = -2288.012575 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.11146 -35.03708 -32.93665 -31.93114 -29.65110 -27.90150 -26.15103 -24.19546 -23.47009 -21.88787 -20.14224 -18.23224 -17.15539 -15.25593 -14.84347 -14.67280 -14.11341 -14.07413 -13.72724 -13.10318 -12.59935 -12.40657 -12.06203 -11.64720 -11.52463 -11.37726 -11.19427 -11.00160 -10.94529 -10.79277 -10.48248 -10.20300 -10.15409 -9.85961 -9.53967 -9.38201 -8.81837 -7.80438 -6.88202 -5.73281 -3.00236 3.45217 3.49947 3.50540 4.37566 4.63066 5.29109 5.38339 5.47554 5.52874 5.64446 5.79835 5.82348 5.85580 5.91858 5.98494 6.05368 6.11894 6.18344 6.26596 6.29485 6.41151 6.44711 6.54592 6.65051 6.71949 6.84667 6.89624 7.00687 7.12896 7.59737 7.64086 7.73667 8.46203 9.56989 10.16496 10.51346 11.49674 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.031970 B = 0.010228 C = 0.009178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.624070 B = 2737.056005 C = 3050.042043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 H 0.068 0.932 4 C 0.064 3.936 5 N -0.539 5.539 6 C 0.020 3.980 7 C 0.085 3.915 8 H 0.054 0.946 9 C -0.145 4.145 10 C -0.124 4.124 11 C 0.176 3.824 12 H 0.047 0.953 13 N -0.719 5.719 14 C -0.232 4.232 15 H 0.068 0.932 16 C -0.015 4.015 17 N -0.936 5.936 18 Si 0.904 3.096 19 H -0.292 1.292 20 H -0.287 1.287 21 H -0.287 1.287 22 H 0.051 0.949 23 H 0.040 0.960 24 H 0.067 0.933 25 H 0.041 0.959 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.022 0.978 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.382 0.618 36 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.421 8.019 -5.202 10.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.064 4.064 5 N -0.264 5.264 6 C -0.128 4.128 7 C -0.023 4.023 8 H 0.072 0.928 9 C -0.202 4.202 10 C -0.165 4.165 11 C 0.066 3.934 12 H 0.065 0.935 13 N -0.362 5.362 14 C -0.364 4.364 15 H 0.086 0.914 16 C -0.211 4.211 17 N -0.585 5.585 18 Si 0.736 3.264 19 H -0.218 1.218 20 H -0.214 1.214 21 H -0.214 1.214 22 H 0.070 0.930 23 H 0.059 0.941 24 H 0.086 0.914 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.217 0.783 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.561 8.428 -4.988 11.262 hybrid contribution -0.436 -1.630 0.540 1.772 sum 5.125 6.798 -4.448 9.605 Atomic orbital electron populations 1.21694 0.94999 1.02863 1.00040 1.21372 0.95448 0.99053 0.95230 0.91317 1.22059 0.86900 0.99611 0.97835 1.62009 1.08230 1.54066 1.02101 1.22410 1.00522 0.97593 0.92325 1.21518 0.93701 0.96704 0.90362 0.92758 1.21930 0.95794 1.01474 1.01041 1.22202 0.99455 0.98821 0.96007 1.20309 0.90911 0.87391 0.94819 0.93481 1.42474 1.75697 1.11035 1.06969 1.19208 1.34778 0.95801 0.86580 0.91355 1.24693 1.02318 0.97383 0.96680 1.69649 1.49830 1.14167 1.24855 0.86306 0.77684 0.78991 0.83446 1.21841 1.21417 1.21386 0.93034 0.94138 0.91363 0.94113 0.91982 0.92194 0.91324 0.95909 0.92557 0.92507 0.93158 0.93076 0.91836 0.78296 0.93619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.01 37.16 0.33 -2.03 16 2 C -0.09 -1.60 2.67 -90.53 -0.24 -1.84 16 3 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.06 1.10 4.58 -3.83 -0.02 1.09 16 5 N -0.54 -8.98 4.75 -234.93 -1.12 -10.09 16 6 C 0.02 0.29 9.30 60.07 0.56 0.84 16 7 C 0.09 1.53 2.30 -67.72 -0.16 1.38 16 8 H 0.05 1.18 7.69 -51.93 -0.40 0.79 16 9 C -0.14 -2.18 8.79 37.16 0.33 -1.86 16 10 C -0.12 -2.33 5.05 -26.65 -0.13 -2.46 16 11 C 0.18 3.57 2.60 -67.80 -0.18 3.39 16 12 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 13 N -0.72 -17.73 3.67 -53.31 -0.20 -17.92 16 14 C -0.23 -6.39 9.93 -15.06 -0.15 -6.54 16 15 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 16 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 17 N -0.94 -28.20 13.06 55.49 0.72 -27.48 16 18 Si 0.90 22.52 29.55 -169.99 -5.02 17.50 16 19 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 22 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 1.36 7.30 -51.93 -0.38 0.98 16 25 H 0.04 0.81 6.64 -51.93 -0.34 0.47 16 26 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.89 5.75 -51.93 -0.30 0.60 16 29 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.69 6.15 -51.93 -0.32 0.37 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.38 10.07 5.85 -40.82 -0.24 9.84 16 36 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 277.08 15.07 4.18 4.18 Total: -1.00 -28.94 277.08 -7.36 -36.29 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.17 Total: 6.08 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 0.25 Total: -8.56 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -0.59 Total: -55.49 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.94 -7.36 -36.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307445669.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.220 kcal (2) G-P(sol) polarization free energy of solvation -28.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds