Wall clock time and date at job start Mon Mar 30 2020 02:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.53990 * 2 1 4 4 C 1.53036 * 109.50360 * 239.89794 * 2 1 3 5 5 N 1.46849 * 109.52202 * 180.88316 * 4 2 1 6 6 C 1.46903 * 110.99864 * 185.83868 * 5 4 2 7 7 C 1.46843 * 111.19807 * 61.74408 * 5 4 2 8 8 H 1.08998 * 109.46716 * 58.27320 * 7 5 4 9 9 C 1.53005 * 109.46186 * 178.24050 * 7 5 4 10 10 C 1.53035 * 109.52388 * 298.25514 * 7 5 4 11 11 C 1.53120 * 109.27931 * 59.18220 * 10 7 5 12 12 H 1.08992 * 109.57693 * 182.41154 * 11 10 7 13 13 N 1.46499 * 109.52270 * 62.24977 * 11 10 7 14 14 C 1.36931 * 120.00122 * 85.32019 * 13 11 10 15 15 H 1.08002 * 120.00098 * 0.02562 * 14 13 11 16 16 C 1.38812 * 120.00429 * 180.02562 * 14 13 11 17 17 N 1.31624 * 119.99535 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00187 * 180.27849 * 16 14 13 19 19 H 1.48497 * 109.47173 * 179.72427 * 18 16 14 20 20 H 1.48506 * 109.46866 * 299.71963 * 18 16 14 21 21 H 1.48501 * 109.47438 * 59.72083 * 18 16 14 22 22 H 1.08999 * 109.47039 * 299.90865 * 1 2 3 23 23 H 1.09004 * 109.46823 * 59.90054 * 1 2 3 24 24 H 1.08999 * 109.47461 * 179.90045 * 1 2 3 25 25 H 1.09005 * 109.46194 * 300.89415 * 4 2 1 26 26 H 1.08996 * 109.46330 * 60.86462 * 4 2 1 27 27 H 1.08999 * 109.46807 * 63.95238 * 6 5 4 28 28 H 1.08994 * 109.47306 * 183.95520 * 6 5 4 29 29 H 1.08999 * 109.47122 * 303.95437 * 6 5 4 30 30 H 1.08998 * 109.47124 * 60.00171 * 9 7 5 31 31 H 1.08998 * 109.47045 * 179.97438 * 9 7 5 32 32 H 1.08998 * 109.47342 * 299.99843 * 9 7 5 33 33 H 1.09003 * 109.50307 * 299.24089 * 10 7 5 34 34 H 1.08998 * 109.50539 * 179.12142 * 10 7 5 35 35 H 0.97001 * 119.99790 * 265.31536 * 13 11 10 36 36 H 0.97005 * 119.99717 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0410 -0.7235 -1.2480 5 7 3.5093 -0.7422 -1.2378 6 6 4.0373 -1.3061 -2.4873 7 6 4.0229 -1.4731 -0.0723 8 1 3.6374 -2.4926 -0.0841 9 6 5.5517 -1.5058 -0.1242 10 6 3.5711 -0.7720 1.2108 11 6 2.0412 -0.7238 1.2488 12 1 1.7147 -0.1876 2.1398 13 7 1.5089 -2.0884 1.2761 14 6 1.3800 -2.7494 2.4683 15 1 1.6703 -2.2646 3.3887 16 6 0.8761 -4.0426 2.4942 17 7 0.5218 -4.6333 1.3725 18 14 0.6930 -4.9413 4.1214 19 1 0.1307 -6.2942 3.8792 20 1 2.0231 -5.0670 4.7699 21 1 -0.2202 -4.1773 5.0089 22 1 -0.3633 0.5124 0.8908 23 1 -0.3633 0.5154 -0.8891 24 1 -0.3634 -1.0276 -0.0018 25 1 1.6648 -1.7466 -1.2543 26 1 1.6906 -0.2024 -2.1389 27 1 3.7602 -0.6622 -3.3220 28 1 5.1234 -1.3733 -2.4252 29 1 3.6200 -2.3011 -2.6418 30 1 5.9375 -0.4864 -0.1128 31 1 5.9331 -2.0479 0.7411 32 1 5.8737 -2.0060 -1.0375 33 1 3.9678 0.2431 1.2299 34 1 3.9394 -1.3235 2.0759 35 1 1.2477 -2.5237 0.4495 36 1 0.1694 -5.5369 1.3906 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307445669.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:18 Heat of formation + Delta-G solvation = -11.987787 kcal Electronic energy + Delta-G solvation = -15306.532051 eV Core-core repulsion = 13017.699296 eV Total energy + Delta-G solvation = -2288.832755 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.57957 -36.65298 -34.68825 -33.53347 -31.46546 -29.35787 -27.55836 -25.88570 -25.15148 -23.40824 -21.56518 -19.84714 -19.17383 -16.65317 -16.63284 -16.17575 -15.76253 -15.58702 -15.38330 -14.68026 -14.25665 -13.81783 -13.51179 -13.07581 -13.01094 -12.84238 -12.75639 -12.66462 -12.54733 -12.26422 -12.19105 -12.16755 -11.68895 -11.47152 -11.33010 -10.91838 -10.76751 -9.23727 -8.91281 -7.91884 -5.17632 1.45199 1.47636 1.53476 2.56992 3.04298 3.41447 3.86969 3.98675 4.08933 4.14533 4.24309 4.45776 4.50946 4.58390 4.68692 4.70982 4.81948 4.84707 4.87165 4.94931 5.03797 5.08055 5.15897 5.21719 5.25138 5.33488 5.42237 5.47666 5.50776 5.64917 6.22581 6.26694 6.31196 7.36770 8.15632 8.38902 9.31804 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.031970 B = 0.010228 C = 0.009178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.624070 B = 2737.056005 C = 3050.042043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.084 4.084 3 H 0.094 0.906 4 C 0.067 3.933 5 N -0.532 5.532 6 C 0.018 3.982 7 C 0.088 3.912 8 H 0.006 0.994 9 C -0.138 4.138 10 C -0.118 4.118 11 C 0.166 3.834 12 H 0.041 0.959 13 N -0.726 5.726 14 C -0.230 4.230 15 H 0.072 0.928 16 C -0.078 4.078 17 N -0.972 5.972 18 Si 0.967 3.033 19 H -0.298 1.298 20 H -0.280 1.280 21 H -0.279 1.279 22 H 0.052 0.948 23 H 0.069 0.931 24 H 0.031 0.969 25 H 0.005 0.995 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.007 0.993 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.043 0.957 35 H 0.371 0.629 36 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.462 9.837 -5.500 12.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.104 4.104 3 H 0.112 0.888 4 C -0.061 4.061 5 N -0.256 5.256 6 C -0.130 4.130 7 C -0.021 4.021 8 H 0.025 0.975 9 C -0.195 4.195 10 C -0.158 4.158 11 C 0.058 3.942 12 H 0.059 0.941 13 N -0.367 5.367 14 C -0.362 4.362 15 H 0.090 0.910 16 C -0.269 4.269 17 N -0.624 5.624 18 Si 0.797 3.203 19 H -0.225 1.225 20 H -0.207 1.207 21 H -0.206 1.206 22 H 0.072 0.928 23 H 0.088 0.912 24 H 0.050 0.950 25 H 0.023 0.977 26 H 0.106 0.894 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.025 0.975 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.062 0.938 35 H 0.204 0.796 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.627 10.294 -5.276 13.331 hybrid contribution -0.739 -2.113 0.599 2.318 sum 5.888 8.181 -4.676 11.111 Atomic orbital electron populations 1.21620 0.94819 1.00887 1.01617 1.21334 0.95576 0.99727 0.93733 0.88815 1.22044 0.87458 0.97845 0.98768 1.62092 1.07624 1.53409 1.02508 1.22530 1.01422 0.97187 0.91852 1.21424 0.95731 0.94091 0.90843 0.97546 1.21863 0.93198 1.02731 1.01697 1.22083 0.97956 0.99986 0.95770 1.20573 0.92005 0.85407 0.96236 0.94108 1.42595 1.75875 1.12588 1.05617 1.19575 1.32989 0.95943 0.87670 0.90987 1.25448 1.03282 0.98479 0.99718 1.69817 1.51615 1.14115 1.26839 0.85294 0.77780 0.77366 0.79852 1.22486 1.20668 1.20559 0.92840 0.91170 0.95021 0.97679 0.89403 0.89866 0.89651 0.97463 0.90776 0.92745 0.91844 0.90533 0.93789 0.79598 0.94349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.37 9.01 71.98 0.65 -3.72 16 2 C -0.08 -2.82 2.67 -10.74 -0.03 -2.85 16 3 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 4 C 0.07 2.23 4.58 86.32 0.40 2.63 16 5 N -0.53 -16.64 4.75 -897.18 -4.26 -20.90 16 6 C 0.02 0.47 9.30 127.69 1.19 1.66 16 7 C 0.09 3.09 2.30 44.94 0.10 3.20 16 8 H 0.01 0.29 7.69 -2.39 -0.02 0.27 16 9 C -0.14 -3.86 8.79 71.98 0.63 -3.23 16 10 C -0.12 -4.30 5.05 30.65 0.15 -4.14 16 11 C 0.17 6.69 2.60 45.07 0.12 6.81 16 12 H 0.04 1.68 8.08 -2.39 -0.02 1.66 16 13 N -0.73 -36.69 3.67 -322.56 -1.18 -37.87 16 14 C -0.23 -12.85 9.93 84.03 0.83 -12.02 16 15 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 16 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 17 N -0.97 -60.51 13.06 21.65 0.28 -60.23 16 18 Si 0.97 47.06 29.55 68.60 2.03 49.09 16 19 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 20 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 22 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 24 H 0.03 1.27 7.30 -2.39 -0.02 1.25 16 25 H 0.00 0.20 6.64 -2.38 -0.02 0.19 16 26 H 0.09 2.47 8.12 -2.39 -0.02 2.45 16 27 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.08 1.97 5.75 -2.39 -0.01 1.95 16 29 H 0.01 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.60 6.15 -2.39 -0.01 1.59 16 33 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.37 20.41 5.85 -92.71 -0.54 19.87 16 36 H 0.25 15.07 8.31 -92.70 -0.77 14.30 16 Total: -1.00 -63.19 277.08 1.87 -61.32 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.49 Total: 24.29 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 4.51 Total: -15.70 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -5.16 Total: -119.00 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -63.19 1.87 -61.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307445669.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.329 kcal (2) G-P(sol) polarization free energy of solvation -63.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds