Wall clock time and date at job start Mon Mar 30 2020 02:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46052 * 2 1 4 4 C 1.53044 * 109.46053 * 240.02532 * 2 1 3 5 5 C 1.53192 * 109.30994 * 301.34656 * 4 2 1 6 6 H 1.09002 * 109.58513 * 65.29759 * 5 4 2 7 7 C 1.52999 * 109.58355 * 185.57436 * 5 4 2 8 8 N 1.46924 * 108.89699 * 305.43661 * 5 4 2 9 9 C 1.36933 * 120.62973 * 233.53813 * 8 5 4 10 10 H 1.08002 * 120.00033 * 29.68192 * 9 8 5 11 11 C 1.38811 * 119.99764 * 209.68429 * 9 8 5 12 12 N 1.31617 * 120.00007 * 12.20309 * 11 9 8 13 13 Si 1.86809 * 119.99984 * 192.19991 * 11 9 8 14 14 H 1.48504 * 109.46868 * 60.00154 * 13 11 9 15 15 H 1.48496 * 109.47001 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47145 * 300.00222 * 13 11 9 17 17 C 1.46959 * 118.71240 * 53.35792 * 8 5 4 18 18 C 1.53036 * 109.45714 * 119.95930 * 2 1 3 19 19 H 1.09000 * 109.49893 * 178.60506 * 18 2 1 20 20 C 1.52998 * 109.49873 * 298.70045 * 18 2 1 21 21 N 1.46905 * 109.47323 * 185.00154 * 20 18 2 22 22 H 1.08998 * 109.47649 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47399 * 299.97712 * 1 2 3 24 24 H 1.09008 * 109.46938 * 59.97317 * 1 2 3 25 25 H 1.08995 * 109.49959 * 181.39506 * 4 2 1 26 26 H 1.08997 * 109.49478 * 61.30082 * 4 2 1 27 27 H 1.09001 * 109.47077 * 59.71833 * 7 5 4 28 28 H 1.08999 * 109.47371 * 299.71798 * 7 5 4 29 29 H 1.09005 * 109.47216 * 179.71357 * 7 5 4 30 30 H 0.97001 * 119.99659 * 180.02562 * 12 11 9 31 31 H 1.09006 * 109.59195 * 186.78847 * 17 8 5 32 32 H 1.08993 * 109.58767 * 66.50386 * 17 8 5 33 33 H 1.09001 * 109.47603 * 305.00310 * 20 18 2 34 34 H 1.09007 * 109.47222 * 65.00232 * 20 18 2 35 35 H 1.00893 * 110.99722 * 56.04976 * 21 20 18 36 36 H 1.00903 * 110.99851 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7210 -1.2500 5 6 1.4995 -2.1543 -1.2639 6 1 0.4148 -2.1349 -1.3696 7 6 2.1151 -2.9231 -2.4347 8 7 1.8595 -2.8109 0.0002 9 6 2.5211 -4.0098 0.0000 10 1 3.1885 -4.2581 -0.8120 11 6 2.3338 -4.9060 1.0433 12 7 1.3536 -4.7208 1.9020 13 14 3.4729 -6.3749 1.2287 14 1 4.8680 -5.8996 1.4102 15 1 3.0640 -7.1719 2.4131 16 1 3.3925 -7.2205 0.0106 17 6 1.4994 -2.1540 1.2645 18 6 2.0397 -0.7206 1.2502 19 1 3.1295 -0.7427 1.2384 20 6 1.5568 0.0197 2.4990 21 7 2.1439 -0.6010 3.6940 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5135 0.8902 24 1 -0.3633 0.5143 -0.8898 25 1 3.1295 -0.7430 -1.2382 26 1 1.6958 -0.1937 -2.1398 27 1 3.1997 -2.9414 -2.3272 28 1 1.8511 -2.4317 -3.3711 29 1 1.7334 -3.9441 -2.4399 30 1 1.2230 -5.3469 2.6313 31 1 1.9380 -2.7015 2.0988 32 1 0.4148 -2.1345 1.3702 33 1 1.8641 1.0641 2.4439 34 1 0.4697 -0.0365 2.5571 35 1 3.1509 -0.6193 3.6343 36 1 1.8395 -0.1298 4.5327 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307480018.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:38 Heat of formation + Delta-G solvation = 7.900755 kcal Electronic energy + Delta-G solvation = -15482.905028 eV Core-core repulsion = 13194.934705 eV Total energy + Delta-G solvation = -2287.970323 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.62514 -34.78177 -33.22148 -31.51143 -29.83094 -27.07136 -26.27383 -24.81772 -22.83071 -21.45195 -19.81673 -17.91889 -15.99019 -15.67979 -14.79095 -14.27625 -14.03665 -13.93462 -13.50220 -13.26407 -12.63223 -12.57716 -11.88040 -11.55189 -11.25156 -11.06735 -10.84213 -10.74874 -10.51635 -10.50955 -10.17861 -10.04221 -9.77815 -9.63590 -9.20424 -9.13601 -8.31171 -8.07302 -6.42085 -5.59893 -3.05543 3.46463 3.52127 3.52710 4.60936 5.01562 5.34252 5.48245 5.55844 5.66762 5.69960 5.77280 6.00141 6.10906 6.16994 6.24573 6.26127 6.33482 6.46018 6.59251 6.63565 6.69553 6.75699 6.77510 6.92159 7.11412 7.20344 7.27921 7.59174 7.70800 7.89277 7.93588 8.11542 8.67177 9.40538 10.04369 10.61986 11.46973 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026981 B = 0.013388 C = 0.009899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.513233 B = 2090.864892 C = 2827.909266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.078 4.078 3 H 0.046 0.954 4 C -0.123 4.123 5 C 0.166 3.834 6 H 0.025 0.975 7 C -0.137 4.137 8 N -0.589 5.589 9 C -0.251 4.251 10 H 0.065 0.935 11 C 0.004 3.996 12 N -0.898 5.898 13 Si 0.899 3.101 14 H -0.286 1.286 15 H -0.292 1.292 16 H -0.285 1.285 17 C 0.188 3.812 18 C -0.108 4.108 19 H 0.057 0.943 20 C 0.074 3.926 21 N -0.841 5.841 22 H 0.070 0.930 23 H 0.045 0.955 24 H 0.041 0.959 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.035 0.965 29 H 0.059 0.941 30 H 0.252 0.748 31 H 0.101 0.899 32 H 0.015 0.985 33 H 0.008 0.992 34 H 0.068 0.932 35 H 0.337 0.663 36 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.504 9.316 -1.703 9.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.097 4.097 3 H 0.064 0.936 4 C -0.163 4.163 5 C 0.060 3.940 6 H 0.042 0.958 7 C -0.195 4.195 8 N -0.312 5.312 9 C -0.381 4.381 10 H 0.083 0.917 11 C -0.195 4.195 12 N -0.543 5.543 13 Si 0.729 3.271 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.211 1.211 17 C 0.063 3.937 18 C -0.128 4.128 19 H 0.075 0.925 20 C -0.057 4.057 21 N -0.369 5.369 22 H 0.088 0.912 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.119 0.881 32 H 0.033 0.967 33 H 0.027 0.973 34 H 0.086 0.914 35 H 0.149 0.851 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.045 8.522 -1.796 8.710 hybrid contribution 1.036 0.255 0.322 1.114 sum 1.081 8.777 -1.474 8.965 Atomic orbital electron populations 1.21947 0.95998 1.02737 0.99875 1.20965 0.95476 0.97323 0.95908 0.93595 1.22060 1.00285 0.98068 0.95860 1.20448 0.95602 0.90186 0.87811 0.95775 1.21823 1.00903 1.00721 0.96037 1.44153 1.66961 1.20886 0.99244 1.19097 1.18323 0.92889 1.07763 0.91709 1.25086 0.97161 0.97395 0.99809 1.69982 1.29735 1.37354 1.17180 0.86441 0.80716 0.82888 0.77059 1.21239 1.21748 1.21138 1.20770 0.96101 0.86884 0.89991 1.21871 0.99745 0.99829 0.91396 0.92502 1.21829 0.99558 0.93599 0.90745 1.58574 1.13630 1.60883 1.03818 0.91151 0.93557 0.93983 0.92682 0.93493 0.93018 0.94598 0.92163 0.93761 0.88129 0.96717 0.97342 0.91354 0.85122 0.85843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 8.11 37.16 0.30 -2.18 16 2 C -0.08 -1.37 2.71 -90.58 -0.25 -1.61 16 3 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.12 -2.27 4.92 -26.61 -0.13 -2.40 16 5 C 0.17 3.57 3.02 -67.60 -0.20 3.37 16 6 H 0.02 0.55 6.70 -51.93 -0.35 0.20 16 7 C -0.14 -2.72 7.95 37.16 0.30 -2.42 16 8 N -0.59 -14.96 3.00 -164.75 -0.49 -15.46 16 9 C -0.25 -6.94 8.60 -15.06 -0.13 -7.07 16 10 H 0.07 1.76 6.21 -52.49 -0.33 1.43 16 11 C 0.00 0.12 5.03 -17.43 -0.09 0.03 16 12 N -0.90 -26.66 11.03 55.49 0.61 -26.05 16 13 Si 0.90 22.23 29.57 -169.99 -5.03 17.20 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 16 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 17 C 0.19 4.58 3.90 -3.69 -0.01 4.57 16 18 C -0.11 -2.11 2.26 -90.50 -0.20 -2.32 16 19 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 20 C 0.07 1.24 5.71 -3.82 -0.02 1.22 16 21 N -0.84 -13.80 9.20 -10.36 -0.10 -13.89 16 22 H 0.07 1.37 4.99 -51.93 -0.26 1.11 16 23 H 0.05 0.71 6.57 -51.93 -0.34 0.37 16 24 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 25 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 1.03 7.42 -51.93 -0.39 0.65 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.28 7.64 -51.93 -0.40 0.88 16 30 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.10 2.80 5.82 -51.93 -0.30 2.50 16 32 H 0.01 0.39 6.70 -51.93 -0.35 0.04 16 33 H 0.01 0.13 8.14 -51.93 -0.42 -0.30 16 34 H 0.07 1.18 6.73 -51.92 -0.35 0.83 16 35 H 0.34 5.24 8.99 -39.30 -0.35 4.88 16 36 H 0.33 4.45 9.08 -39.29 -0.36 4.10 16 LS Contribution 268.48 15.07 4.05 4.05 Total: -1.00 -29.68 268.48 -7.26 -36.94 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.86 Total: 6.02 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -0.44 Total: -8.81 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.02 Total: -55.39 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.68 -7.26 -36.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307480018.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.845 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds