Wall clock time and date at job start Mon Mar 30 2020 02:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.45866 * 2 1 4 4 C 1.53044 * 109.44496 * 240.04227 * 2 1 3 5 5 C 1.53200 * 109.30744 * 178.61922 * 4 2 1 6 6 H 1.08994 * 109.58723 * 294.84162 * 5 4 2 7 7 C 1.53005 * 109.58200 * 174.41801 * 5 4 2 8 8 N 1.46928 * 108.77710 * 54.63602 * 5 4 2 9 9 C 1.36936 * 120.63056 * 126.38589 * 8 5 4 10 10 H 1.07998 * 120.00302 * 330.16431 * 9 8 5 11 11 C 1.38814 * 119.99431 * 150.16036 * 9 8 5 12 12 N 1.31613 * 120.00490 * 344.49812 * 11 9 8 13 13 Si 1.86804 * 119.99461 * 164.50073 * 11 9 8 14 14 H 1.48498 * 109.47381 * 60.00229 * 13 11 9 15 15 H 1.48506 * 109.46898 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47143 * 299.99588 * 13 11 9 17 17 C 1.46920 * 118.73596 * 306.38850 * 8 5 4 18 18 C 1.53032 * 109.46301 * 119.97618 * 2 1 3 19 19 H 1.09007 * 109.49632 * 61.39135 * 18 2 1 20 20 C 1.53001 * 109.49947 * 301.32354 * 18 2 1 21 21 N 1.46900 * 109.46982 * 174.99619 * 20 18 2 22 22 H 1.09004 * 109.46842 * 300.01956 * 1 2 3 23 23 H 1.08996 * 109.47295 * 60.01881 * 1 2 3 24 24 H 1.08996 * 109.47173 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.49715 * 298.56663 * 4 2 1 26 26 H 1.08997 * 109.49847 * 58.63759 * 4 2 1 27 27 H 1.09001 * 109.46925 * 60.00252 * 7 5 4 28 28 H 1.09000 * 109.46900 * 179.97438 * 7 5 4 29 29 H 1.08998 * 109.47228 * 300.00374 * 7 5 4 30 30 H 0.97001 * 120.00379 * 179.97438 * 12 11 9 31 31 H 1.08999 * 109.58684 * 293.82130 * 17 8 5 32 32 H 1.09000 * 109.58843 * 173.39474 * 17 8 5 33 33 H 1.08992 * 109.46999 * 294.99455 * 20 18 2 34 34 H 1.08999 * 109.46675 * 54.99752 * 20 18 2 35 35 H 1.00903 * 110.99823 * 179.97438 * 21 20 18 36 36 H 1.00899 * 111.00234 * 303.95615 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0395 -0.7206 -1.2503 5 6 3.5711 -0.6887 -1.2647 6 1 3.9141 0.3407 -1.3677 7 6 4.0905 -1.5252 -2.4358 8 7 4.0677 -1.2493 -0.0006 9 6 4.9756 -2.2743 -0.0009 10 1 4.9853 -2.9870 -0.8123 11 6 5.8837 -2.3973 1.0418 12 7 6.0859 -1.3873 1.8610 13 14 6.8189 -3.9965 1.2820 14 1 7.6245 -4.2860 0.0686 15 1 7.7192 -3.8718 2.4564 16 1 5.8559 -5.1032 1.5125 17 6 3.5714 -0.6891 1.2638 18 6 2.0399 -0.7209 1.2499 19 1 1.6972 -1.7557 1.2383 20 6 1.5031 -0.0191 2.4990 21 7 1.8931 -0.7797 3.6937 22 1 -0.3633 0.5142 0.8899 23 1 -0.3634 0.5135 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 1.6973 -1.7554 -1.2386 26 1 1.6563 -0.2207 -2.1399 27 1 3.7108 -1.1153 -3.3717 28 1 5.1802 -1.5008 -2.4445 29 1 3.7505 -2.5550 -2.3257 30 1 6.7202 -1.4734 2.5899 31 1 3.9146 0.3403 1.3670 32 1 3.9417 -1.2852 2.0978 33 1 1.9184 0.9869 2.5572 34 1 0.4161 0.0391 2.4441 35 1 1.5505 -0.3360 4.5326 36 1 1.5749 -1.7353 3.6338 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307480019.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:40 Heat of formation + Delta-G solvation = -16.162399 kcal Electronic energy + Delta-G solvation = -15335.666341 eV Core-core repulsion = 13046.652561 eV Total energy + Delta-G solvation = -2289.013780 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.03451 -36.50974 -34.97075 -33.31250 -31.85171 -29.03845 -27.96409 -25.93804 -24.55531 -22.63500 -21.27467 -20.60115 -18.22381 -17.17123 -16.49645 -15.88247 -15.64983 -15.46788 -15.17082 -14.74806 -14.18069 -13.84162 -13.56326 -13.19255 -13.00940 -12.86711 -12.68523 -12.44318 -12.36936 -12.25596 -11.97886 -11.82264 -11.56312 -11.38589 -10.88642 -10.83706 -10.43113 -9.35609 -8.53004 -7.75933 -5.23135 1.46771 1.49596 1.55829 2.55933 3.36516 3.67734 3.73085 4.00825 4.11415 4.23743 4.30285 4.55891 4.60442 4.68999 4.72427 4.86213 4.89759 4.93969 5.00403 5.03808 5.16098 5.23134 5.26429 5.35719 5.50647 5.57848 5.63870 5.72113 5.80870 6.00630 6.38434 6.51943 6.74414 7.26023 7.99945 8.52010 9.29025 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027651 B = 0.012632 C = 0.009419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.371469 B = 2216.070194 C = 2972.058281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.081 4.081 3 H 0.053 0.947 4 C -0.111 4.111 5 C 0.152 3.848 6 H 0.006 0.994 7 C -0.127 4.127 8 N -0.608 5.608 9 C -0.255 4.255 10 H 0.070 0.930 11 C -0.052 4.052 12 N -0.932 5.932 13 Si 0.960 3.040 14 H -0.276 1.276 15 H -0.297 1.297 16 H -0.279 1.279 17 C 0.199 3.801 18 C -0.093 4.093 19 H 0.049 0.951 20 C 0.078 3.922 21 N -0.861 5.861 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.036 0.964 29 H 0.048 0.952 30 H 0.245 0.755 31 H -0.025 1.025 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.347 0.653 36 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.069 1.731 -2.655 12.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.100 4.100 3 H 0.072 0.928 4 C -0.150 4.150 5 C 0.047 3.953 6 H 0.024 0.976 7 C -0.185 4.185 8 N -0.332 5.332 9 C -0.386 4.386 10 H 0.087 0.913 11 C -0.247 4.247 12 N -0.578 5.578 13 Si 0.789 3.211 14 H -0.202 1.202 15 H -0.223 1.223 16 H -0.205 1.205 17 C 0.074 3.926 18 C -0.113 4.113 19 H 0.067 0.933 20 C -0.053 4.053 21 N -0.392 5.392 22 H 0.081 0.919 23 H 0.084 0.916 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.054 0.946 31 H -0.007 1.007 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.161 0.839 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.199 1.901 -2.770 11.692 hybrid contribution 0.112 -0.721 0.636 0.968 sum -11.087 1.180 -2.134 11.352 Atomic orbital electron populations 1.21828 0.93477 1.01802 1.02264 1.21013 0.96434 0.98280 0.94254 0.92830 1.21968 0.95332 1.00097 0.97627 1.20732 0.93442 0.94263 0.86882 0.97639 1.21714 1.00155 0.99657 0.96939 1.44487 1.48258 1.39544 1.00897 1.19424 1.08484 1.02990 1.07657 0.91280 1.25815 0.98607 0.99894 1.00382 1.70196 1.37538 1.30629 1.19416 0.85455 0.78241 0.80497 0.76924 1.20197 1.22350 1.20548 1.20424 0.89641 0.93894 0.88675 1.21664 0.97199 0.98205 0.94269 0.93297 1.21759 0.97303 0.96711 0.89492 1.58493 1.69522 1.06526 1.04654 0.91851 0.91553 0.92919 0.92882 0.90331 0.90761 0.94521 0.93277 0.94555 1.00743 0.92083 0.92669 0.93290 0.83931 0.84570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.81 71.98 0.63 -2.66 16 2 C -0.08 -2.63 2.23 -10.77 -0.02 -2.65 16 3 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 4 C -0.11 -3.80 4.65 30.68 0.14 -3.65 16 5 C 0.15 6.54 3.50 44.98 0.16 6.70 16 6 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 7 C -0.13 -4.88 7.95 71.98 0.57 -4.31 16 8 N -0.61 -31.72 2.99 -675.22 -2.02 -33.74 16 9 C -0.26 -14.41 8.58 84.03 0.72 -13.69 16 10 H 0.07 3.77 6.23 -2.91 -0.02 3.75 16 11 C -0.05 -3.00 4.94 84.86 0.42 -2.58 16 12 N -0.93 -57.86 11.23 21.65 0.24 -57.61 16 13 Si 0.96 46.65 29.58 68.60 2.03 48.68 16 14 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 15 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 16 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 17 C 0.20 10.13 4.39 86.36 0.38 10.51 16 18 C -0.09 -3.55 2.02 -10.72 -0.02 -3.57 16 19 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 20 C 0.08 2.50 5.93 86.30 0.51 3.01 16 21 N -0.86 -27.50 9.20 -186.73 -1.72 -29.22 16 22 H 0.06 1.37 6.29 -2.38 -0.02 1.36 16 23 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.04 1.54 7.67 -2.39 -0.02 1.52 16 29 H 0.05 1.89 7.40 -2.39 -0.02 1.87 16 30 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 31 H -0.03 -1.44 8.14 -2.39 -0.02 -1.46 16 32 H 0.06 3.54 5.93 -2.39 -0.01 3.53 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.05 1.27 6.14 -2.39 -0.01 1.25 16 35 H 0.35 8.89 9.08 -89.69 -0.81 8.07 16 36 H 0.34 10.29 8.99 -89.69 -0.81 9.48 16 Total: -1.00 -66.57 274.78 1.47 -65.10 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -0.56 Total: 19.68 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 3.49 Total: -12.90 kcal Atomic # 7 Polarization: -117.08 SS G_CDS: -3.49 Total: -120.57 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -66.57 1.47 -65.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307480019.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.942 kcal (2) G-P(sol) polarization free energy of solvation -66.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds