Wall clock time and date at job start Mon Mar 30 2020 02:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.45851 * 2 1 4 4 C 1.53039 * 109.46060 * 240.02453 * 2 1 3 5 5 C 1.53188 * 109.31101 * 178.61253 * 4 2 1 6 6 H 1.08999 * 109.59155 * 294.84900 * 5 4 2 7 7 C 1.52997 * 109.58658 * 174.42188 * 5 4 2 8 8 N 1.46929 * 108.77644 * 54.63654 * 5 4 2 9 9 C 1.36937 * 120.63281 * 126.40865 * 8 5 4 10 10 H 1.08001 * 119.99646 * 330.82610 * 9 8 5 11 11 C 1.38814 * 120.00268 * 150.82286 * 9 8 5 12 12 N 1.31615 * 119.99875 * 159.41610 * 11 9 8 13 13 Si 1.86805 * 119.99615 * 339.41680 * 11 9 8 14 14 H 1.48496 * 109.47156 * 92.56895 * 13 11 9 15 15 H 1.48491 * 109.46845 * 212.56890 * 13 11 9 16 16 H 1.48497 * 109.47197 * 332.56991 * 13 11 9 17 17 C 1.46919 * 118.73785 * 306.39312 * 8 5 4 18 18 C 1.53043 * 109.45886 * 119.95520 * 2 1 3 19 19 H 1.09005 * 109.49678 * 301.33986 * 18 2 1 20 20 C 1.52995 * 109.49644 * 61.43371 * 18 2 1 21 21 N 1.46896 * 109.47171 * 184.06400 * 20 18 2 22 22 H 1.09002 * 109.47597 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47490 * 59.97378 * 1 2 3 24 24 H 1.09004 * 109.47448 * 299.97601 * 1 2 3 25 25 H 1.08994 * 109.49590 * 298.56736 * 4 2 1 26 26 H 1.08999 * 109.49392 * 58.66445 * 4 2 1 27 27 H 1.09005 * 109.47484 * 60.00198 * 7 5 4 28 28 H 1.08996 * 109.47666 * 180.02562 * 7 5 4 29 29 H 1.09008 * 109.47411 * 300.00154 * 7 5 4 30 30 H 0.97002 * 119.99150 * 180.02562 * 12 11 9 31 31 H 1.09006 * 109.58859 * 173.39437 * 17 8 5 32 32 H 1.09002 * 109.58858 * 293.67439 * 17 8 5 33 33 H 1.08995 * 109.47737 * 304.06850 * 20 18 2 34 34 H 1.09004 * 109.46999 * 64.06960 * 20 18 2 35 35 H 1.00903 * 110.99774 * 56.04890 * 21 20 18 36 36 H 1.00904 * 111.00634 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2499 5 6 3.5713 -0.6887 -1.2641 6 1 3.9143 0.3408 -1.3673 7 6 4.0912 -1.5254 -2.4348 8 7 4.0679 -1.2487 0.0003 9 6 4.9764 -2.2733 0.0005 10 1 4.9936 -2.9799 -0.8162 11 6 5.8753 -2.4037 1.0502 12 7 6.4581 -3.5617 1.2775 13 14 6.2575 -0.9357 2.1403 14 1 5.3500 -0.9422 3.3157 15 1 7.6665 -1.0159 2.6023 16 1 6.0600 0.3180 1.3694 17 6 3.5713 -0.6884 1.2644 18 6 2.0398 -0.7205 1.2502 19 1 1.6571 -0.2203 2.1399 20 6 1.5597 -2.1731 1.2340 21 7 1.9664 -2.8373 2.4795 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5142 -0.8897 24 1 -0.3634 0.5135 0.8902 25 1 1.6978 -1.7558 -1.2380 26 1 1.6572 -0.2210 -2.1397 27 1 3.7115 -1.1159 -3.3710 28 1 5.1808 -1.5016 -2.4429 29 1 3.7514 -2.5553 -2.3245 30 1 7.0859 -3.6529 2.0113 31 1 3.9416 -1.2842 2.0987 32 1 3.9163 0.3404 1.3686 33 1 0.4733 -2.1958 1.1481 34 1 2.0023 -2.6925 0.3840 35 1 1.6220 -2.3369 3.2852 36 1 1.6612 -3.7989 2.4930 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307480034.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:46 Heat of formation + Delta-G solvation = 14.490371 kcal Electronic energy + Delta-G solvation = -15675.767688 eV Core-core repulsion = 13388.083112 eV Total energy + Delta-G solvation = -2287.684576 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.91460 -34.64309 -33.29239 -31.64697 -30.67141 -27.63581 -26.19690 -24.34694 -23.20675 -21.86318 -19.75846 -18.30388 -16.21822 -15.71205 -14.93959 -14.55713 -14.33029 -13.95442 -13.67955 -13.10320 -12.68579 -12.38001 -12.18108 -11.91692 -11.69230 -11.33553 -11.13463 -10.92588 -10.81230 -10.41122 -10.30130 -10.07951 -9.83298 -9.64719 -9.26275 -9.18586 -8.38602 -7.91971 -6.71403 -5.75002 -3.09365 3.50745 3.61781 3.65680 4.73823 5.02585 5.07535 5.21992 5.34644 5.44024 5.63765 5.67174 5.81659 5.95390 5.98899 6.04092 6.14061 6.16840 6.31745 6.33404 6.44919 6.48025 6.57949 6.62712 6.74187 6.79440 6.92386 7.07376 7.11151 7.21596 7.78366 8.02549 8.19207 8.54299 9.15837 9.95626 10.33730 11.41353 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.028911 B = 0.014525 C = 0.012270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.243118 B = 1927.211313 C = 2281.442269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 H 0.062 0.938 4 C -0.125 4.125 5 C 0.169 3.831 6 H 0.025 0.975 7 C -0.135 4.135 8 N -0.596 5.596 9 C -0.250 4.250 10 H 0.086 0.914 11 C 0.033 3.967 12 N -0.910 5.910 13 Si 0.878 3.122 14 H -0.287 1.287 15 H -0.309 1.309 16 H -0.276 1.276 17 C 0.137 3.863 18 C -0.097 4.097 19 H 0.053 0.947 20 C 0.079 3.921 21 N -0.837 5.837 22 H 0.054 0.946 23 H 0.048 0.952 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.259 0.741 31 H 0.089 0.911 32 H 0.012 0.988 33 H 0.007 0.993 34 H 0.088 0.912 35 H 0.326 0.674 36 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.288 5.676 -1.854 12.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.101 4.101 3 H 0.081 0.919 4 C -0.164 4.164 5 C 0.062 3.938 6 H 0.042 0.958 7 C -0.193 4.193 8 N -0.320 5.320 9 C -0.378 4.378 10 H 0.104 0.896 11 C -0.166 4.166 12 N -0.554 5.554 13 Si 0.709 3.291 14 H -0.215 1.215 15 H -0.238 1.238 16 H -0.201 1.201 17 C 0.011 3.989 18 C -0.118 4.118 19 H 0.071 0.929 20 C -0.051 4.051 21 N -0.365 5.365 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.030 0.970 33 H 0.025 0.975 34 H 0.106 0.894 35 H 0.137 0.863 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.401 5.714 -2.034 12.040 hybrid contribution -0.789 0.751 0.978 1.464 sum -11.190 6.464 -1.056 12.966 Atomic orbital electron populations 1.21912 0.96423 1.01382 1.00642 1.21028 0.94179 0.99087 0.95831 0.91948 1.22144 0.98179 1.00271 0.95830 1.20454 0.90959 0.95093 0.87252 0.95770 1.21799 1.01931 1.00092 0.95470 1.44367 1.48619 1.40206 0.98834 1.18798 1.08322 1.02069 1.08641 0.89649 1.25200 0.97253 0.96272 0.97857 1.69836 1.31905 1.22476 1.31138 0.86987 0.75844 0.85328 0.80895 1.21498 1.23769 1.20108 1.21300 0.90609 0.96145 0.90820 1.21617 0.99147 0.94930 0.96082 0.92896 1.21804 0.94650 0.95009 0.93652 1.58502 1.68624 1.05686 1.03699 0.92729 0.93322 0.93462 0.91841 0.93172 0.94391 0.91885 0.92532 0.93174 0.89331 0.97011 0.97456 0.89399 0.86323 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.88 37.16 0.33 -1.58 16 2 C -0.08 -1.31 2.45 -90.58 -0.22 -1.54 16 3 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.13 -2.10 4.31 -26.61 -0.11 -2.22 16 5 C 0.17 3.39 3.50 -67.60 -0.24 3.16 16 6 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 7 C -0.14 -2.57 7.95 37.16 0.30 -2.27 16 8 N -0.60 -14.21 2.11 -164.78 -0.35 -14.56 16 9 C -0.25 -6.97 9.03 -15.06 -0.14 -7.10 16 10 H 0.09 2.52 6.39 -52.49 -0.34 2.18 16 11 C 0.03 0.96 5.21 -17.43 -0.09 0.87 16 12 N -0.91 -28.45 13.97 55.49 0.78 -27.68 16 13 Si 0.88 23.41 24.38 -169.99 -4.14 19.27 16 14 H -0.29 -7.53 6.64 56.52 0.38 -7.15 16 15 H -0.31 -8.40 7.11 56.52 0.40 -7.99 16 16 H -0.28 -7.28 6.73 56.52 0.38 -6.90 16 17 C 0.14 3.10 3.56 -3.72 -0.01 3.09 16 18 C -0.10 -1.76 2.33 -90.50 -0.21 -1.98 16 19 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 20 C 0.08 1.41 5.40 -3.83 -0.02 1.39 16 21 N -0.84 -14.91 8.96 -10.37 -0.09 -15.01 16 22 H 0.05 0.71 6.38 -51.93 -0.33 0.38 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 1.11 6.43 -51.93 -0.33 0.77 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 1.30 7.66 -51.93 -0.40 0.90 16 29 H 0.06 1.12 7.40 -51.92 -0.38 0.74 16 30 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 31 H 0.09 2.24 4.18 -51.93 -0.22 2.03 16 32 H 0.01 0.28 7.09 -51.93 -0.37 -0.09 16 33 H 0.01 0.12 6.27 -51.93 -0.33 -0.21 16 34 H 0.09 1.83 6.10 -51.93 -0.32 1.51 16 35 H 0.33 5.04 8.99 -39.29 -0.35 4.69 16 36 H 0.34 5.37 9.08 -39.29 -0.36 5.01 16 LS Contribution 263.78 15.07 3.98 3.98 Total: -1.00 -30.85 263.78 -6.12 -36.96 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -5.86 Total: 5.22 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -0.42 Total: -8.18 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.33 Total: -57.25 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -4.14 Total: 19.27 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.85 -6.12 -36.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307480034.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.454 kcal (2) G-P(sol) polarization free energy of solvation -30.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds