Wall clock time and date at job start Mon Mar 30 2020 02:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47446 * 2 1 4 4 C 1.50698 * 109.47452 * 120.00750 * 2 1 3 5 5 H 1.07996 * 120.00272 * 119.99554 * 4 2 1 6 6 C 1.37879 * 119.99788 * 299.99734 * 4 2 1 7 7 N 1.31514 * 120.00030 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 119.99982 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.47338 * 90.00054 * 8 6 4 10 10 H 1.48496 * 109.47066 * 209.99829 * 8 6 4 11 11 H 1.48497 * 109.47119 * 330.00114 * 8 6 4 12 12 N 1.46900 * 109.46810 * 240.00548 * 2 1 3 13 13 C 1.46849 * 111.00081 * 296.90279 * 12 2 1 14 14 C 1.53035 * 109.52296 * 174.16218 * 13 12 2 15 15 C 1.53118 * 109.28150 * 59.18099 * 14 13 12 16 16 C 1.53124 * 109.15597 * 302.34116 * 15 14 13 17 17 H 1.08998 * 109.50135 * 177.59270 * 16 15 14 18 18 N 1.46894 * 109.50467 * 297.67620 * 16 15 14 19 19 C 1.46849 * 111.00172 * 172.69132 * 12 2 1 20 20 H 1.09000 * 109.45859 * 65.82188 * 19 12 2 21 21 C 1.52999 * 109.45992 * 305.85799 * 19 12 2 22 22 H 1.09002 * 109.46658 * 306.69132 * 1 2 3 23 23 H 1.08993 * 109.47259 * 66.68977 * 1 2 3 24 24 H 1.09000 * 109.47089 * 186.69641 * 1 2 3 25 25 H 0.97000 * 120.00140 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.46437 * 54.14368 * 13 12 2 27 27 H 1.08996 * 109.45258 * 294.17129 * 13 12 2 28 28 H 1.09004 * 109.50277 * 299.23607 * 14 13 12 29 29 H 1.09008 * 109.53285 * 179.14187 * 14 13 12 30 30 H 1.08999 * 109.52094 * 182.44096 * 15 14 13 31 31 H 1.08987 * 109.52314 * 62.24742 * 15 14 13 32 32 H 1.00902 * 111.00185 * 299.91698 * 18 16 15 33 33 H 1.00893 * 111.00469 * 63.87957 * 18 16 15 34 34 H 1.08992 * 109.47056 * 306.76751 * 21 19 12 35 35 H 1.08992 * 109.47199 * 66.77241 * 21 19 12 36 36 H 1.09006 * 109.46828 * 186.77120 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1311 6 6 1.6994 -0.2396 2.4827 7 7 2.1374 -0.8599 3.5564 8 14 0.6261 1.2796 2.6542 9 1 -0.8019 0.8744 2.6995 10 1 0.9774 1.9950 3.9072 11 1 0.8493 2.1772 1.4925 12 7 2.0196 -0.6924 -1.1995 13 6 1.6101 -2.1026 -1.1971 14 6 2.0100 -2.7535 -2.5232 15 6 3.5266 -2.6434 -2.7034 16 6 3.9326 -1.1678 -2.6538 17 1 5.0161 -1.0855 -2.7388 18 7 3.2973 -0.4467 -3.7648 19 6 3.4771 -0.5628 -1.3240 20 1 3.9600 -1.0896 -0.5009 21 6 3.8630 0.9170 -1.2782 22 1 -0.3633 0.6141 0.8241 23 1 -0.3633 0.4066 -0.9437 24 1 -0.3633 -1.0207 0.1198 25 1 1.9028 -0.5288 4.4375 26 1 0.5292 -2.1668 -1.0724 27 1 2.1020 -2.6220 -0.3747 28 1 1.5078 -2.2432 -3.3451 29 1 1.7198 -3.8042 -2.5156 30 1 3.8106 -3.0672 -3.6666 31 1 4.0289 -3.1865 -1.9031 32 1 3.5818 -0.8294 -4.6540 33 1 2.2926 -0.4536 -3.6729 34 1 3.2882 1.4656 -2.0242 35 1 3.6489 1.3178 -0.2875 36 1 4.9271 1.0216 -1.4903 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307656332.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:33 Heat of formation + Delta-G solvation = -18.850183 kcal Electronic energy + Delta-G solvation = -15581.205935 eV Core-core repulsion = 13292.075604 eV Total energy + Delta-G solvation = -2289.130331 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.65490 -36.75389 -34.23440 -33.65118 -31.90867 -29.67127 -27.37862 -27.03890 -24.86938 -22.59339 -21.38998 -20.03445 -18.37767 -17.42859 -16.66738 -16.31931 -15.87502 -15.32966 -15.14727 -14.82062 -14.44391 -14.01935 -13.94548 -13.38636 -13.26531 -12.80141 -12.69777 -12.63655 -12.45133 -12.10264 -11.95849 -11.69170 -11.53062 -11.44495 -11.08642 -10.82320 -10.72181 -9.35252 -8.87379 -8.30977 -6.34185 1.29516 1.35131 1.45308 2.30937 3.05566 3.26135 3.83420 3.91785 4.05357 4.18865 4.30637 4.55229 4.58913 4.65261 4.71862 4.75146 4.86099 4.87308 4.92850 5.03986 5.06440 5.11754 5.18182 5.31415 5.36319 5.41364 5.48566 5.55627 5.61420 6.19565 6.40536 6.47586 6.61000 6.74083 6.91357 7.33798 8.85890 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040633 B = 0.010857 C = 0.010524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.928749 B = 2578.308458 C = 2659.871987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.172 3.828 3 H 0.040 0.960 4 C -0.530 4.530 5 H 0.031 0.969 6 C 0.013 3.987 7 N -0.951 5.951 8 Si 0.949 3.051 9 H -0.268 1.268 10 H -0.302 1.302 11 H -0.246 1.246 12 N -0.506 5.506 13 C 0.057 3.943 14 C -0.108 4.108 15 C -0.152 4.152 16 C 0.109 3.891 17 H 0.081 0.919 18 N -0.831 5.831 19 C 0.091 3.909 20 H 0.005 0.995 21 C -0.122 4.122 22 H 0.031 0.969 23 H 0.068 0.932 24 H 0.046 0.954 25 H 0.263 0.737 26 H 0.067 0.933 27 H 0.001 0.999 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.343 0.657 33 H 0.349 0.651 34 H 0.071 0.929 35 H 0.028 0.972 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.292 0.060 -14.425 14.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.063 3.937 3 H 0.058 0.942 4 C -0.569 4.569 5 H 0.049 0.951 6 C -0.184 4.184 7 N -0.591 5.591 8 Si 0.777 3.223 9 H -0.194 1.194 10 H -0.230 1.230 11 H -0.170 1.170 12 N -0.230 5.230 13 C -0.071 4.071 14 C -0.146 4.146 15 C -0.191 4.191 16 C -0.004 4.004 17 H 0.099 0.901 18 N -0.363 5.363 19 C -0.018 4.018 20 H 0.023 0.977 21 C -0.180 4.180 22 H 0.050 0.950 23 H 0.087 0.913 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.020 0.980 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.156 0.844 33 H 0.164 0.836 34 H 0.090 0.910 35 H 0.047 0.953 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.110 0.934 -14.402 14.432 hybrid contribution -0.333 -1.079 1.742 2.076 sum -0.443 -0.145 -12.660 12.668 Atomic orbital electron populations 1.22052 0.97161 1.00529 0.99934 1.19674 0.92469 0.94888 0.86663 0.94184 1.21835 1.30909 1.12439 0.91742 0.95121 1.25824 0.97236 0.99837 0.95501 1.70073 1.47891 1.42609 0.98569 0.85850 0.79163 0.80212 0.77125 1.19356 1.23034 1.17026 1.62389 1.10906 1.12071 1.37615 1.21988 0.99902 0.89056 0.96202 1.21565 0.95957 1.00334 0.96719 1.22377 0.96503 0.98179 1.02060 1.21330 0.98215 0.90275 0.90538 0.90108 1.58781 1.14475 1.59269 1.03750 1.21463 0.88525 0.96774 0.95050 0.97680 1.21596 1.00854 0.95217 1.00312 0.94996 0.91325 0.93475 0.92793 0.91477 0.98030 0.90285 0.90942 0.89662 0.93673 0.84362 0.83605 0.91013 0.95315 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.81 8.25 71.98 0.59 -5.21 16 2 C 0.17 7.90 1.59 44.17 0.07 7.97 16 3 H 0.04 1.92 5.00 -2.39 -0.01 1.91 16 4 C -0.53 -29.88 7.78 25.60 0.20 -29.68 16 5 H 0.03 1.96 6.09 -2.91 -0.02 1.94 16 6 C 0.01 0.78 5.45 84.66 0.46 1.24 16 7 N -0.95 -60.03 13.96 21.45 0.30 -59.73 16 8 Si 0.95 45.42 24.30 68.60 1.67 47.08 16 9 H -0.27 -12.20 6.93 99.48 0.69 -11.51 16 10 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 11 H -0.25 -10.95 6.53 99.48 0.65 -10.30 16 12 N -0.51 -19.77 3.76 -850.40 -3.20 -22.98 16 13 C 0.06 2.14 4.79 86.32 0.41 2.55 16 14 C -0.11 -2.96 5.76 30.65 0.18 -2.79 16 15 C -0.15 -3.98 5.67 30.68 0.17 -3.81 16 16 C 0.11 3.10 3.16 44.97 0.14 3.25 16 17 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 18 N -0.83 -20.23 8.52 -168.47 -1.44 -21.66 16 19 C 0.09 3.44 1.90 44.94 0.09 3.52 16 20 H 0.01 0.24 7.11 -2.39 -0.02 0.22 16 21 C -0.12 -4.44 8.27 71.98 0.60 -3.85 16 22 H 0.03 1.36 3.48 -2.39 -0.01 1.35 16 23 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 24 H 0.05 1.97 6.69 -2.39 -0.02 1.95 16 25 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 26 H 0.07 2.51 6.25 -2.39 -0.01 2.49 16 27 H 0.00 0.06 6.50 -2.39 -0.02 0.05 16 28 H 0.08 1.91 6.90 -2.38 -0.02 1.89 16 29 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.34 6.44 9.04 -89.69 -0.81 5.63 16 33 H 0.35 8.99 6.76 -89.70 -0.61 8.38 16 34 H 0.07 2.48 7.81 -2.39 -0.02 2.46 16 35 H 0.03 1.17 6.58 -2.39 -0.02 1.16 16 36 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -63.91 259.10 -0.17 -64.08 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -0.41 Total: 20.02 kcal Atomic # 6 Polarization: -29.72 SS G_CDS: 2.91 Total: -26.81 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -4.34 Total: -104.37 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.67 Total: 47.08 kcal Total: -63.91 -0.17 -64.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307656332.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.228 kcal (2) G-P(sol) polarization free energy of solvation -63.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds