Wall clock time and date at job start Mon Mar 30 2020 03:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46903 * 111.00067 * 2 1 4 4 C 1.53124 * 109.52235 * 85.31902 * 3 2 1 5 5 C 1.53039 * 109.27498 * 177.55794 * 4 3 2 6 6 N 1.46843 * 109.52391 * 300.81655 * 5 4 3 7 7 C 1.46901 * 111.00022 * 185.84211 * 6 5 4 8 8 H 1.09000 * 109.47018 * 185.79312 * 7 6 5 9 9 C 1.53004 * 109.47031 * 305.78980 * 7 6 5 10 10 C 1.50697 * 109.46966 * 65.79105 * 7 6 5 11 11 H 1.07997 * 120.00003 * 0.02562 * 10 7 6 12 12 C 1.37879 * 119.99500 * 179.97438 * 10 7 6 13 13 N 1.31520 * 119.99888 * 179.97438 * 12 10 7 14 14 Si 1.86797 * 120.00393 * 0.02562 * 12 10 7 15 15 H 1.48496 * 109.47612 * 89.99682 * 14 12 10 16 16 H 1.48504 * 109.47070 * 209.99804 * 14 12 10 17 17 H 1.48505 * 109.47089 * 329.99205 * 14 12 10 18 18 C 1.46854 * 111.19690 * 61.74512 * 6 5 4 19 19 C 1.53029 * 109.52283 * 298.25524 * 18 6 5 20 20 H 1.08989 * 109.47411 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47309 * 300.00229 * 1 2 3 22 22 H 1.09004 * 109.46936 * 59.99785 * 1 2 3 23 23 H 1.00904 * 110.99850 * 123.95418 * 2 1 3 24 24 H 1.08998 * 109.57350 * 325.15579 * 3 2 1 25 25 H 1.08997 * 109.50088 * 297.49702 * 4 3 2 26 26 H 1.09004 * 109.50324 * 57.61877 * 4 3 2 27 27 H 1.09001 * 109.45805 * 180.80724 * 5 4 3 28 28 H 1.08997 * 109.46104 * 60.83468 * 5 4 3 29 29 H 1.08994 * 109.47144 * 179.97438 * 9 7 6 30 30 H 1.09001 * 109.47370 * 300.00481 * 9 7 6 31 31 H 1.09000 * 109.46948 * 60.00289 * 9 7 6 32 32 H 0.96999 * 120.00377 * 180.02562 * 13 12 10 33 33 H 1.08999 * 109.45788 * 178.23958 * 18 6 5 34 34 H 1.09003 * 109.45264 * 58.26841 * 18 6 5 35 35 H 1.08994 * 109.50822 * 299.23828 * 19 18 6 36 36 H 1.09001 * 109.50199 * 179.11868 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 2.0688 1.8914 1.4384 5 6 2.6746 3.2968 1.4373 6 7 4.0175 3.2519 0.8449 7 6 4.6844 4.5563 0.9528 8 1 5.6331 4.5248 0.4171 9 6 3.7904 5.6381 0.3433 10 6 4.9373 4.8726 2.4044 11 1 4.6334 4.1743 3.1701 12 6 5.5575 6.0531 2.7547 13 7 5.7778 6.3295 4.0215 14 14 6.0837 7.2607 1.4302 15 1 4.9762 8.2121 1.1593 16 1 7.2793 8.0112 1.8913 17 1 6.4142 6.5188 0.1869 18 6 3.9670 2.8005 -0.5516 19 6 3.3999 1.3804 -0.6099 20 1 -0.3633 -1.0275 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8305 -0.5262 0.7814 24 1 1.3394 2.0144 -0.5868 25 1 1.0660 1.9277 1.8638 26 1 2.6938 1.2262 2.0343 27 1 2.7415 3.6641 2.4613 28 1 2.0419 3.9645 0.8526 29 1 4.2849 6.6061 0.4238 30 1 3.6073 5.4093 -0.7066 31 1 2.8416 5.6697 0.8790 32 1 6.2139 7.1602 4.2681 33 1 4.9727 2.8076 -0.9721 34 1 3.3282 3.4707 -1.1268 35 1 4.0457 0.7072 -0.0462 36 1 3.3480 1.0516 -1.6478 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307682850.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:28 Heat of formation + Delta-G solvation = 6.692964 kcal Electronic energy + Delta-G solvation = -14987.480101 eV Core-core repulsion = 12699.457404 eV Total energy + Delta-G solvation = -2288.022697 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.98316 -36.14617 -33.14327 -31.43590 -30.34690 -28.59716 -25.39108 -24.90457 -22.72870 -22.30070 -20.33397 -18.98709 -16.51493 -15.81939 -15.31521 -14.70135 -14.38905 -14.15177 -13.72997 -13.33270 -13.17498 -12.72712 -12.31924 -12.18645 -12.03031 -11.58564 -11.45069 -11.26281 -11.05329 -10.62174 -10.40512 -10.26075 -10.06695 -9.84633 -9.46143 -9.03411 -8.57398 -8.30225 -7.29376 -6.05847 -4.03573 3.25832 3.36446 3.38713 4.28421 4.40210 4.77221 5.07572 5.19131 5.26069 5.32491 5.44168 5.55162 5.69726 5.80320 5.83844 5.95884 6.01565 6.11438 6.19547 6.24700 6.29634 6.41748 6.48534 6.51143 6.61840 6.74057 6.87533 7.10353 7.21581 7.40474 7.66475 7.98557 8.12863 8.68407 9.02012 9.56697 11.07354 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.057827 B = 0.007842 C = 0.007421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.085518 B = 3569.498338 C = 3772.371364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.692 5.692 3 C 0.085 3.915 4 C -0.144 4.144 5 C 0.066 3.934 6 N -0.519 5.519 7 C 0.181 3.819 8 H 0.039 0.961 9 C -0.185 4.185 10 C -0.500 4.500 11 H 0.081 0.919 12 C 0.069 3.931 13 N -0.901 5.901 14 Si 0.887 3.113 15 H -0.281 1.281 16 H -0.297 1.297 17 H -0.268 1.268 18 C 0.051 3.949 19 C -0.099 4.099 20 H 0.063 0.937 21 H 0.021 0.979 22 H 0.061 0.939 23 H 0.341 0.659 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.023 0.977 29 H 0.044 0.956 30 H 0.028 0.972 31 H 0.055 0.945 32 H 0.263 0.737 33 H 0.069 0.931 34 H 0.023 0.977 35 H 0.069 0.931 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.106 -8.322 -8.433 14.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.321 5.321 3 C -0.024 4.024 4 C -0.183 4.183 5 C -0.063 4.063 6 N -0.243 5.243 7 C 0.073 3.927 8 H 0.057 0.943 9 C -0.244 4.244 10 C -0.539 4.539 11 H 0.099 0.901 12 C -0.133 4.133 13 N -0.539 5.539 14 Si 0.717 3.283 15 H -0.209 1.209 16 H -0.224 1.224 17 H -0.194 1.194 18 C -0.079 4.079 19 C -0.138 4.138 20 H 0.081 0.919 21 H 0.040 0.960 22 H 0.079 0.921 23 H 0.159 0.841 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.106 0.894 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.041 0.959 35 H 0.087 0.913 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.713 -8.625 -8.733 14.496 hybrid contribution -0.439 1.767 -0.153 1.827 sum -8.152 -6.858 -8.886 13.873 Atomic orbital electron populations 1.22184 0.88475 1.01308 1.00258 1.60585 1.07257 1.14440 1.49865 1.21697 0.96586 0.88347 0.95795 1.22321 0.99880 0.99044 0.97093 1.21905 0.89164 0.93851 1.01377 1.62077 1.17869 1.29931 1.14395 1.19769 0.92325 0.82845 0.97763 0.94300 1.22820 1.02054 1.01274 0.98268 1.20946 1.38311 1.04391 0.90206 0.90072 1.24923 0.95457 0.97790 0.95106 1.69882 1.43260 1.24979 1.15816 0.86882 0.77377 0.81529 0.82474 1.20862 1.22439 1.19363 1.22081 0.99969 0.94780 0.91030 1.21520 0.94924 0.97042 1.00292 0.91862 0.96015 0.92063 0.84134 0.91291 0.92741 0.91122 0.89405 0.95881 0.93773 0.95298 0.92631 0.92675 0.91272 0.95864 0.91256 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.50 60.06 0.63 0.92 16 2 N -0.69 -8.45 6.61 -113.87 -0.75 -9.20 16 3 C 0.09 1.19 2.53 -67.58 -0.17 1.02 16 4 C -0.14 -2.20 5.35 -26.65 -0.14 -2.35 16 5 C 0.07 1.25 4.55 -3.83 -0.02 1.23 16 6 N -0.52 -10.68 4.60 -228.08 -1.05 -11.73 16 7 C 0.18 4.28 1.90 -68.86 -0.13 4.15 16 8 H 0.04 0.96 7.04 -51.93 -0.37 0.60 16 9 C -0.19 -4.07 7.93 37.16 0.29 -3.78 16 10 C -0.50 -13.96 8.46 -34.44 -0.29 -14.25 16 11 H 0.08 2.47 7.36 -52.49 -0.39 2.09 16 12 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 13 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 14 Si 0.89 22.01 24.37 -169.99 -4.14 17.86 16 15 H -0.28 -6.84 6.87 56.52 0.39 -6.45 16 16 H -0.30 -7.39 7.11 56.52 0.40 -6.98 16 17 H -0.27 -6.40 6.53 56.52 0.37 -6.03 16 18 C 0.05 0.87 5.13 -3.83 -0.02 0.85 16 19 C -0.10 -1.46 5.70 -26.65 -0.15 -1.61 16 20 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.02 0.22 7.51 -51.93 -0.39 -0.17 16 22 H 0.06 0.63 8.06 -51.93 -0.42 0.21 16 23 H 0.34 3.92 8.53 -39.29 -0.34 3.58 16 24 H 0.07 0.99 7.80 -51.93 -0.41 0.58 16 25 H 0.05 0.76 7.54 -51.93 -0.39 0.37 16 26 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 27 H 0.09 1.89 6.70 -51.93 -0.35 1.54 16 28 H 0.02 0.43 6.58 -51.93 -0.34 0.09 16 29 H 0.04 1.01 3.27 -51.93 -0.17 0.84 16 30 H 0.03 0.55 6.81 -51.93 -0.35 0.20 16 31 H 0.05 1.20 6.46 -51.93 -0.34 0.86 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.07 1.18 8.01 -51.93 -0.42 0.76 16 34 H 0.02 0.40 6.87 -51.93 -0.36 0.04 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 266.93 15.07 4.02 4.02 Total: -1.00 -29.32 266.93 -7.13 -36.44 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.88 Total: 1.25 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -0.10 Total: -11.95 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -1.03 Total: -47.64 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.14 Total: 17.86 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.32 -7.13 -36.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307682850.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.137 kcal (2) G-P(sol) polarization free energy of solvation -29.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds