Wall clock time and date at job start Mon Mar 30 2020 03:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46903 * 111.00067 * 2 1 4 4 C 1.53124 * 109.52235 * 85.31902 * 3 2 1 5 5 C 1.53039 * 109.27498 * 177.55794 * 4 3 2 6 6 N 1.46843 * 109.52391 * 300.81655 * 5 4 3 7 7 C 1.46901 * 111.00022 * 185.84211 * 6 5 4 8 8 H 1.09000 * 109.47018 * 185.79312 * 7 6 5 9 9 C 1.53004 * 109.47031 * 305.78980 * 7 6 5 10 10 C 1.50697 * 109.46966 * 65.79105 * 7 6 5 11 11 H 1.07997 * 120.00003 * 0.02562 * 10 7 6 12 12 C 1.37879 * 119.99500 * 179.97438 * 10 7 6 13 13 N 1.31520 * 119.99888 * 179.97438 * 12 10 7 14 14 Si 1.86797 * 120.00393 * 0.02562 * 12 10 7 15 15 H 1.48496 * 109.47612 * 89.99682 * 14 12 10 16 16 H 1.48504 * 109.47070 * 209.99804 * 14 12 10 17 17 H 1.48505 * 109.47089 * 329.99205 * 14 12 10 18 18 C 1.46854 * 111.19690 * 61.74512 * 6 5 4 19 19 C 1.53029 * 109.52283 * 298.25524 * 18 6 5 20 20 H 1.08989 * 109.47411 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47309 * 300.00229 * 1 2 3 22 22 H 1.09004 * 109.46936 * 59.99785 * 1 2 3 23 23 H 1.00904 * 110.99850 * 123.95418 * 2 1 3 24 24 H 1.08998 * 109.57350 * 325.15579 * 3 2 1 25 25 H 1.08997 * 109.50088 * 297.49702 * 4 3 2 26 26 H 1.09004 * 109.50324 * 57.61877 * 4 3 2 27 27 H 1.09001 * 109.45805 * 180.80724 * 5 4 3 28 28 H 1.08997 * 109.46104 * 60.83468 * 5 4 3 29 29 H 1.08994 * 109.47144 * 179.97438 * 9 7 6 30 30 H 1.09001 * 109.47370 * 300.00481 * 9 7 6 31 31 H 1.09000 * 109.46948 * 60.00289 * 9 7 6 32 32 H 0.96999 * 120.00377 * 180.02562 * 13 12 10 33 33 H 1.08999 * 109.45788 * 178.23958 * 18 6 5 34 34 H 1.09003 * 109.45264 * 58.26841 * 18 6 5 35 35 H 1.08994 * 109.50822 * 299.23828 * 19 18 6 36 36 H 1.09001 * 109.50199 * 179.11868 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 2.0688 1.8914 1.4384 5 6 2.6746 3.2968 1.4373 6 7 4.0175 3.2519 0.8449 7 6 4.6844 4.5563 0.9528 8 1 5.6331 4.5248 0.4171 9 6 3.7904 5.6381 0.3433 10 6 4.9373 4.8726 2.4044 11 1 4.6334 4.1743 3.1701 12 6 5.5575 6.0531 2.7547 13 7 5.7778 6.3295 4.0215 14 14 6.0837 7.2607 1.4302 15 1 4.9762 8.2121 1.1593 16 1 7.2793 8.0112 1.8913 17 1 6.4142 6.5188 0.1869 18 6 3.9670 2.8005 -0.5516 19 6 3.3999 1.3804 -0.6099 20 1 -0.3633 -1.0275 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8305 -0.5262 0.7814 24 1 1.3394 2.0144 -0.5868 25 1 1.0660 1.9277 1.8638 26 1 2.6938 1.2262 2.0343 27 1 2.7415 3.6641 2.4613 28 1 2.0419 3.9645 0.8526 29 1 4.2849 6.6061 0.4238 30 1 3.6073 5.4093 -0.7066 31 1 2.8416 5.6697 0.8790 32 1 6.2139 7.1602 4.2681 33 1 4.9727 2.8076 -0.9721 34 1 3.3282 3.4707 -1.1268 35 1 4.0457 0.7072 -0.0462 36 1 3.3480 1.0516 -1.6478 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307682850.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:28 Heat of formation + Delta-G solvation = -15.997189 kcal Electronic energy + Delta-G solvation = -14988.464020 eV Core-core repulsion = 12699.457404 eV Total energy + Delta-G solvation = -2289.006616 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.39121 -37.49437 -34.92035 -33.15715 -31.70037 -30.12130 -27.26116 -26.15869 -24.13640 -23.61831 -21.87693 -20.46694 -18.60117 -17.29576 -16.80051 -16.09126 -15.77394 -15.48578 -15.25918 -14.82672 -14.49950 -14.39560 -14.05332 -13.53940 -13.28431 -13.08968 -12.90613 -12.83503 -12.54196 -12.15171 -11.97176 -11.76989 -11.59075 -11.48411 -11.15918 -11.02292 -10.74459 -9.31019 -8.89979 -8.27775 -6.30093 1.28997 1.35084 1.45138 2.31777 3.06050 3.21607 3.33323 3.88039 3.97955 4.22977 4.31041 4.44370 4.48179 4.50789 4.56205 4.62527 4.63494 4.69205 4.82795 4.86403 4.96437 5.04294 5.06110 5.11680 5.20168 5.25226 5.38666 5.46404 5.64531 6.07012 6.10101 6.45496 6.49034 6.73836 6.77244 7.34628 8.89241 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.057827 B = 0.007842 C = 0.007421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.085518 B = 3569.498338 C = 3772.371364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.693 5.693 3 C 0.095 3.905 4 C -0.134 4.134 5 C 0.070 3.930 6 N -0.536 5.536 7 C 0.183 3.817 8 H 0.034 0.966 9 C -0.179 4.179 10 C -0.501 4.501 11 H 0.037 0.963 12 C 0.010 3.990 13 N -0.950 5.950 14 Si 0.950 3.050 15 H -0.269 1.269 16 H -0.298 1.298 17 H -0.249 1.249 18 C 0.050 3.950 19 C -0.092 4.092 20 H 0.080 0.920 21 H 0.021 0.979 22 H 0.064 0.936 23 H 0.345 0.655 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.029 0.971 29 H 0.036 0.964 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.265 0.735 33 H 0.070 0.930 34 H 0.033 0.967 35 H 0.061 0.939 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.036 -8.833 -11.050 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.322 5.322 3 C -0.016 4.016 4 C -0.173 4.173 5 C -0.059 4.059 6 N -0.260 5.260 7 C 0.074 3.926 8 H 0.052 0.948 9 C -0.238 4.238 10 C -0.540 4.540 11 H 0.055 0.945 12 C -0.186 4.186 13 N -0.591 5.591 14 Si 0.778 3.222 15 H -0.196 1.196 16 H -0.226 1.226 17 H -0.173 1.173 18 C -0.079 4.079 19 C -0.130 4.130 20 H 0.098 0.902 21 H 0.040 0.960 22 H 0.082 0.918 23 H 0.163 0.837 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.664 -9.167 -11.369 16.981 hybrid contribution -0.191 1.817 0.732 1.968 sum -8.855 -7.351 -10.637 15.671 Atomic orbital electron populations 1.22260 0.87131 1.02540 1.00379 1.60580 1.08506 1.13020 1.50104 1.21554 0.96363 0.89434 0.94220 1.22240 1.00022 0.96435 0.98622 1.21820 0.88809 0.96248 0.99041 1.61973 1.18709 1.28241 1.17086 1.19568 0.93066 0.85248 0.94688 0.94846 1.22680 1.01231 0.99861 0.99987 1.21184 1.37440 1.03409 0.91921 0.94512 1.25776 0.95662 0.99904 0.97292 1.70039 1.44920 1.25896 1.18253 0.85835 0.77086 0.79198 0.80108 1.19555 1.22607 1.17254 1.22176 1.00612 0.96345 0.88728 1.21460 0.95026 0.95110 1.01446 0.90164 0.96031 0.91758 0.83672 0.90920 0.91303 0.92054 0.93321 0.95294 0.94572 0.92149 0.92917 0.92604 0.91108 0.94928 0.92024 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.50 127.69 1.34 1.81 16 2 N -0.69 -14.90 6.61 -514.19 -3.40 -18.29 16 3 C 0.09 2.38 2.53 45.00 0.11 2.50 16 4 C -0.13 -3.93 5.35 30.65 0.16 -3.77 16 5 C 0.07 2.62 4.55 86.33 0.39 3.02 16 6 N -0.54 -21.75 4.60 -875.51 -4.02 -25.77 16 7 C 0.18 8.56 1.90 44.17 0.08 8.64 16 8 H 0.03 1.61 7.04 -2.39 -0.02 1.59 16 9 C -0.18 -7.48 7.93 71.98 0.57 -6.91 16 10 C -0.50 -28.80 8.46 25.60 0.22 -28.58 16 11 H 0.04 2.38 7.36 -2.91 -0.02 2.35 16 12 C 0.01 0.61 5.45 84.65 0.46 1.07 16 13 N -0.95 -59.89 13.96 21.45 0.30 -59.59 16 14 Si 0.95 45.16 24.37 68.60 1.67 46.83 16 15 H -0.27 -12.20 6.87 99.48 0.68 -11.52 16 16 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 17 H -0.25 -10.93 6.53 99.48 0.65 -10.28 16 18 C 0.05 1.60 5.13 86.32 0.44 2.04 16 19 C -0.09 -2.46 5.70 30.65 0.17 -2.29 16 20 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 21 H 0.02 0.38 7.51 -2.38 -0.02 0.36 16 22 H 0.06 1.11 8.06 -2.39 -0.02 1.09 16 23 H 0.35 7.07 8.53 -89.69 -0.77 6.30 16 24 H 0.07 1.83 7.80 -2.39 -0.02 1.81 16 25 H 0.07 1.82 7.54 -2.39 -0.02 1.80 16 26 H 0.06 1.92 8.10 -2.38 -0.02 1.90 16 27 H 0.05 2.19 6.70 -2.39 -0.02 2.17 16 28 H 0.03 1.05 6.58 -2.39 -0.02 1.03 16 29 H 0.04 1.56 3.27 -2.39 -0.01 1.55 16 30 H 0.06 2.13 6.81 -2.39 -0.02 2.11 16 31 H 0.05 2.20 6.46 -2.39 -0.02 2.18 16 32 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 33 H 0.07 2.24 8.01 -2.39 -0.02 2.22 16 34 H 0.03 1.00 6.87 -2.39 -0.02 0.98 16 35 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -64.13 266.93 -1.28 -65.41 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.21 Total: 13.89 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: 3.96 Total: -22.47 kcal Atomic # 7 Polarization: -96.53 SS G_CDS: -7.12 Total: -103.65 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.67 Total: 46.83 kcal Total: -64.13 -1.28 -65.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307682850.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.409 kcal (2) G-P(sol) polarization free energy of solvation -64.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds