Wall clock time and date at job start Mon Mar 30 2020 02:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.36426 * 2 1 4 4 C 1.54373 * 110.51493 * 237.57416 * 2 1 3 5 5 C 1.54256 * 105.06174 * 217.31956 * 4 2 1 6 6 H 1.08996 * 110.40939 * 118.94268 * 5 4 2 7 7 N 1.46903 * 110.32391 * 241.10619 * 5 4 2 8 8 C 1.46901 * 110.99788 * 301.04410 * 7 5 4 9 9 C 1.46901 * 110.99790 * 177.09356 * 7 5 4 10 10 C 1.50701 * 109.46921 * 189.99765 * 9 7 5 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 7 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 7 13 13 N 1.31512 * 119.99594 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99875 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47061 * 90.00257 * 14 12 10 16 16 H 1.48497 * 109.46906 * 209.99430 * 14 12 10 17 17 H 1.48498 * 109.47403 * 329.99876 * 14 12 10 18 18 C 1.54374 * 105.05926 * 0.02562 * 5 4 2 19 19 N 1.48554 * 104.59883 * 23.85083 * 18 5 4 20 20 C 1.46898 * 111.00232 * 200.96083 * 19 18 5 21 21 H 1.08993 * 109.47581 * 299.11177 * 1 2 3 22 22 H 1.09006 * 109.46894 * 59.10807 * 1 2 3 23 23 H 1.09003 * 109.47482 * 179.10570 * 1 2 3 24 24 H 1.09005 * 110.31815 * 98.42352 * 4 2 1 25 25 H 1.09001 * 110.32307 * 336.22514 * 4 2 1 26 26 H 1.09001 * 109.47121 * 296.04690 * 8 7 5 27 27 H 1.09005 * 109.47342 * 56.04784 * 8 7 5 28 28 H 1.08999 * 109.46894 * 176.04703 * 8 7 5 29 29 H 1.09002 * 109.47401 * 69.99793 * 9 7 5 30 30 H 1.09001 * 109.46874 * 309.99805 * 9 7 5 31 31 H 0.97002 * 119.99739 * 180.02562 * 13 12 10 32 32 H 1.09005 * 110.41387 * 142.63546 * 18 5 4 33 33 H 1.09002 * 110.41082 * 264.95362 * 18 5 4 34 34 H 1.08997 * 109.47303 * 60.12442 * 20 19 18 35 35 H 1.09005 * 109.47170 * 180.12207 * 20 19 18 36 36 H 1.09001 * 109.47285 * 300.12349 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0218 0.0000 4 6 2.0710 -0.7753 -1.2204 5 6 3.3210 -1.5162 -0.7027 6 1 3.1930 -2.5939 -0.8036 7 7 4.5157 -1.0744 -1.4345 8 6 4.3723 -1.3229 -2.8752 9 6 5.7250 -1.7201 -0.9067 10 6 6.9446 -1.0685 -1.5059 11 1 6.8325 -0.2558 -2.2083 12 6 8.2035 -1.5093 -1.1568 13 7 9.2678 -0.9403 -1.6794 14 14 8.3973 -2.9146 0.0585 15 1 8.4204 -4.2049 -0.6763 16 1 9.6685 -2.7491 0.8080 17 1 7.2571 -2.9071 1.0099 18 6 3.4296 -1.1268 0.7872 19 7 2.0476 -0.7457 1.1764 20 6 2.0533 0.1022 2.3760 21 1 -0.3634 0.4999 0.8978 22 1 -0.3633 0.5277 -0.8819 23 1 -0.3634 -1.0275 -0.0160 24 1 2.3439 -0.0837 -2.0175 25 1 1.3276 -1.4890 -1.5754 26 1 4.3019 -2.3959 -3.0536 27 1 3.4691 -0.8338 -3.2402 28 1 5.2395 -0.9233 -3.4008 29 1 5.7143 -2.7788 -1.1659 30 1 5.7509 -1.6118 0.1776 31 1 10.1534 -1.2507 -1.4340 32 1 3.7704 -1.9769 1.3785 33 1 4.1079 -0.2825 0.9110 34 1 2.6213 1.0107 2.1761 35 1 1.0289 0.3649 2.6402 36 1 2.5139 -0.4399 3.2019 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307727219.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:51 Heat of formation + Delta-G solvation = 12.620026 kcal Electronic energy + Delta-G solvation = -14834.586925 eV Core-core repulsion = 12546.821244 eV Total energy + Delta-G solvation = -2287.765680 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.24324 -35.99928 -32.56955 -31.66761 -30.19668 -28.00269 -25.84290 -25.17733 -23.57008 -21.31819 -19.98677 -19.23538 -16.87934 -15.91335 -15.27404 -14.81464 -14.32906 -13.98744 -13.70332 -13.47644 -12.75636 -12.60867 -12.39964 -12.28001 -12.00522 -11.61974 -11.27116 -11.14982 -11.01048 -10.81957 -10.67904 -10.52657 -10.42113 -10.02626 -9.78510 -9.25640 -8.57844 -8.33915 -7.38598 -6.05512 -4.02596 3.27898 3.35617 3.37825 4.11868 4.41822 4.81603 4.88089 4.93646 5.24165 5.27078 5.44350 5.54741 5.56713 5.65168 5.76453 5.80059 5.91206 5.95022 6.05185 6.11394 6.18832 6.24349 6.32127 6.35799 6.42740 6.69594 6.85565 6.94375 7.06968 7.19295 7.61086 7.91599 8.06686 8.66285 9.02980 9.56463 11.07660 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041089 B = 0.008232 C = 0.007402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.278911 B = 3400.456388 C = 3782.032389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.059 3.941 3 H 0.053 0.947 4 C -0.113 4.113 5 C 0.077 3.923 6 H 0.040 0.960 7 N -0.526 5.526 8 C 0.035 3.965 9 C 0.160 3.840 10 C -0.508 4.508 11 H 0.080 0.920 12 C 0.068 3.932 13 N -0.901 5.901 14 Si 0.874 3.126 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.267 1.267 18 C 0.041 3.959 19 N -0.515 5.515 20 C 0.015 3.985 21 H 0.050 0.950 22 H 0.056 0.944 23 H 0.060 0.940 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.012 0.988 27 H 0.050 0.950 28 H 0.079 0.921 29 H -0.017 1.017 30 H 0.030 0.970 31 H 0.263 0.737 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.029 0.971 35 H 0.065 0.935 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.220 0.182 4.068 15.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.050 4.050 3 H 0.071 0.929 4 C -0.152 4.152 5 C -0.033 4.033 6 H 0.058 0.942 7 N -0.251 5.251 8 C -0.113 4.113 9 C 0.034 3.966 10 C -0.547 4.547 11 H 0.098 0.902 12 C -0.133 4.133 13 N -0.540 5.540 14 Si 0.702 3.298 15 H -0.203 1.203 16 H -0.211 1.211 17 H -0.192 1.192 18 C -0.087 4.087 19 N -0.239 5.239 20 C -0.134 4.134 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.079 0.921 24 H 0.098 0.902 25 H 0.084 0.916 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.001 0.999 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.047 0.953 35 H 0.083 0.917 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.298 0.220 4.285 15.889 hybrid contribution 0.786 -0.933 0.440 1.297 sum -14.512 -0.714 4.725 15.278 Atomic orbital electron populations 1.21703 0.94327 1.02105 1.00995 1.22634 0.95353 0.96207 0.90761 0.92873 1.22482 0.96246 0.99179 0.97246 1.22291 0.91148 0.96644 0.93189 0.94244 1.62134 1.01601 1.58606 1.02755 1.22268 1.01634 0.97906 0.89486 1.20214 0.88418 0.92043 0.95940 1.21043 0.88252 1.18768 1.26612 0.90169 1.24898 0.95862 0.96543 0.96042 1.69894 0.97972 1.42006 1.44120 0.86875 0.77788 0.83094 0.82093 1.20340 1.21135 1.19163 1.23140 0.89251 1.01026 0.95264 1.65361 1.18689 1.36860 1.03030 1.22477 1.01379 0.95802 0.93753 0.93087 0.92505 0.92062 0.90158 0.91573 0.96963 0.93090 0.90256 0.99905 0.95254 0.92681 0.90710 0.91940 0.95259 0.91668 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.47 9.35 37.16 0.35 -1.12 16 2 C 0.06 0.81 2.88 -66.06 -0.19 0.62 16 3 H 0.05 0.76 7.90 -51.93 -0.41 0.35 16 4 C -0.11 -1.67 5.65 -25.35 -0.14 -1.82 16 5 C 0.08 1.37 2.79 -66.33 -0.19 1.19 16 6 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 7 N -0.53 -11.13 4.54 -234.66 -1.07 -12.19 16 8 C 0.04 0.68 9.08 60.07 0.55 1.23 16 9 C 0.16 3.92 3.65 -4.97 -0.02 3.91 16 10 C -0.51 -14.53 9.07 -34.44 -0.31 -14.84 16 11 H 0.08 2.49 7.35 -52.49 -0.39 2.10 16 12 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 13 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 14 Si 0.87 21.68 27.47 -169.99 -4.67 17.01 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 18 C 0.04 0.71 4.77 -2.19 -0.01 0.70 16 19 N -0.51 -7.61 5.34 -230.34 -1.23 -8.84 16 20 C 0.01 0.19 9.41 60.06 0.57 0.75 16 21 H 0.05 0.52 7.53 -51.93 -0.39 0.13 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 24 H 0.08 1.20 6.38 -51.93 -0.33 0.87 16 25 H 0.07 0.88 7.85 -51.93 -0.41 0.48 16 26 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.05 0.83 6.17 -51.93 -0.32 0.51 16 28 H 0.08 1.69 6.86 -51.93 -0.36 1.33 16 29 H -0.02 -0.41 7.55 -51.93 -0.39 -0.81 16 30 H 0.03 0.73 5.82 -51.93 -0.30 0.42 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.06 1.19 7.72 -51.93 -0.40 0.79 16 34 H 0.03 0.37 7.97 -51.93 -0.41 -0.04 16 35 H 0.06 0.70 7.53 -51.93 -0.39 0.31 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 277.96 15.07 4.19 4.19 Total: -1.00 -30.12 277.96 -7.71 -37.83 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -6.20 Total: -3.56 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 0.50 Total: -7.50 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -1.52 Total: -47.96 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.12 -7.71 -37.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307727219.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.449 kcal (2) G-P(sol) polarization free energy of solvation -30.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds