Wall clock time and date at job start Mon Mar 30 2020 02:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.36426 * 2 1 4 4 C 1.54373 * 110.51493 * 237.57416 * 2 1 3 5 5 C 1.54256 * 105.06174 * 217.31956 * 4 2 1 6 6 H 1.08996 * 110.40939 * 118.94268 * 5 4 2 7 7 N 1.46903 * 110.32391 * 241.10619 * 5 4 2 8 8 C 1.46901 * 110.99788 * 301.04410 * 7 5 4 9 9 C 1.46901 * 110.99790 * 177.09356 * 7 5 4 10 10 C 1.50701 * 109.46921 * 189.99765 * 9 7 5 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 7 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 7 13 13 N 1.31512 * 119.99594 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99875 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47061 * 90.00257 * 14 12 10 16 16 H 1.48497 * 109.46906 * 209.99430 * 14 12 10 17 17 H 1.48498 * 109.47403 * 329.99876 * 14 12 10 18 18 C 1.54374 * 105.05926 * 0.02562 * 5 4 2 19 19 N 1.48554 * 104.59883 * 23.85083 * 18 5 4 20 20 C 1.46898 * 111.00232 * 200.96083 * 19 18 5 21 21 H 1.08993 * 109.47581 * 299.11177 * 1 2 3 22 22 H 1.09006 * 109.46894 * 59.10807 * 1 2 3 23 23 H 1.09003 * 109.47482 * 179.10570 * 1 2 3 24 24 H 1.09005 * 110.31815 * 98.42352 * 4 2 1 25 25 H 1.09001 * 110.32307 * 336.22514 * 4 2 1 26 26 H 1.09001 * 109.47121 * 296.04690 * 8 7 5 27 27 H 1.09005 * 109.47342 * 56.04784 * 8 7 5 28 28 H 1.08999 * 109.46894 * 176.04703 * 8 7 5 29 29 H 1.09002 * 109.47401 * 69.99793 * 9 7 5 30 30 H 1.09001 * 109.46874 * 309.99805 * 9 7 5 31 31 H 0.97002 * 119.99739 * 180.02562 * 13 12 10 32 32 H 1.09005 * 110.41387 * 142.63546 * 18 5 4 33 33 H 1.09002 * 110.41082 * 264.95362 * 18 5 4 34 34 H 1.08997 * 109.47303 * 60.12442 * 20 19 18 35 35 H 1.09005 * 109.47170 * 180.12207 * 20 19 18 36 36 H 1.09001 * 109.47285 * 300.12349 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0218 0.0000 4 6 2.0710 -0.7753 -1.2204 5 6 3.3210 -1.5162 -0.7027 6 1 3.1930 -2.5939 -0.8036 7 7 4.5157 -1.0744 -1.4345 8 6 4.3723 -1.3229 -2.8752 9 6 5.7250 -1.7201 -0.9067 10 6 6.9446 -1.0685 -1.5059 11 1 6.8325 -0.2558 -2.2083 12 6 8.2035 -1.5093 -1.1568 13 7 9.2678 -0.9403 -1.6794 14 14 8.3973 -2.9146 0.0585 15 1 8.4204 -4.2049 -0.6763 16 1 9.6685 -2.7491 0.8080 17 1 7.2571 -2.9071 1.0099 18 6 3.4296 -1.1268 0.7872 19 7 2.0476 -0.7457 1.1764 20 6 2.0533 0.1022 2.3760 21 1 -0.3634 0.4999 0.8978 22 1 -0.3633 0.5277 -0.8819 23 1 -0.3634 -1.0275 -0.0160 24 1 2.3439 -0.0837 -2.0175 25 1 1.3276 -1.4890 -1.5754 26 1 4.3019 -2.3959 -3.0536 27 1 3.4691 -0.8338 -3.2402 28 1 5.2395 -0.9233 -3.4008 29 1 5.7143 -2.7788 -1.1659 30 1 5.7509 -1.6118 0.1776 31 1 10.1534 -1.2507 -1.4340 32 1 3.7704 -1.9769 1.3785 33 1 4.1079 -0.2825 0.9110 34 1 2.6213 1.0107 2.1761 35 1 1.0289 0.3649 2.6402 36 1 2.5139 -0.4399 3.2019 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307727219.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:51 Heat of formation + Delta-G solvation = -9.722905 kcal Electronic energy + Delta-G solvation = -14835.555787 eV Core-core repulsion = 12546.821244 eV Total energy + Delta-G solvation = -2288.734542 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.53363 -37.55205 -34.68804 -32.81645 -31.58147 -29.83528 -27.25783 -26.42866 -24.99472 -23.09453 -21.23885 -20.63786 -19.00195 -17.36491 -16.64596 -16.33761 -15.98116 -15.37536 -15.20091 -14.80199 -14.42042 -14.23773 -13.88151 -13.42366 -13.27850 -13.02945 -12.91328 -12.59678 -12.46149 -12.21488 -12.04687 -11.96437 -11.73328 -11.64565 -11.56393 -11.33995 -10.80789 -9.51745 -9.06847 -8.30406 -6.33520 1.32086 1.33660 1.44606 2.32151 2.88824 3.02780 3.40429 3.62916 3.74197 4.12270 4.27455 4.40192 4.46802 4.52505 4.57609 4.59119 4.65862 4.75254 4.87194 4.90055 4.93555 4.95871 4.99877 5.04439 5.09349 5.16574 5.26540 5.42069 5.52786 5.79543 6.00111 6.07248 6.35878 6.65027 6.72749 7.30107 8.86201 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041089 B = 0.008232 C = 0.007402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.278911 B = 3400.456388 C = 3782.032389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.058 3.942 3 H 0.044 0.956 4 C -0.107 4.107 5 C 0.073 3.927 6 H 0.040 0.960 7 N -0.541 5.541 8 C 0.039 3.961 9 C 0.172 3.828 10 C -0.516 4.516 11 H 0.039 0.961 12 C 0.009 3.991 13 N -0.947 5.947 14 Si 0.944 3.056 15 H -0.268 1.268 16 H -0.279 1.279 17 H -0.250 1.250 18 C 0.043 3.957 19 N -0.514 5.514 20 C 0.013 3.987 21 H 0.060 0.940 22 H 0.072 0.928 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.017 0.983 27 H 0.084 0.916 28 H 0.048 0.952 29 H -0.017 1.017 30 H 0.030 0.970 31 H 0.267 0.733 32 H 0.072 0.928 33 H 0.038 0.962 34 H 0.022 0.978 35 H 0.088 0.912 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.443 -0.796 5.209 18.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.051 4.051 3 H 0.062 0.938 4 C -0.145 4.145 5 C -0.036 4.036 6 H 0.058 0.942 7 N -0.266 5.266 8 C -0.109 4.109 9 C 0.045 3.955 10 C -0.554 4.554 11 H 0.057 0.943 12 C -0.188 4.188 13 N -0.588 5.588 14 Si 0.767 3.233 15 H -0.193 1.193 16 H -0.205 1.205 17 H -0.174 1.174 18 C -0.085 4.085 19 N -0.239 5.239 20 C -0.135 4.135 21 H 0.079 0.921 22 H 0.090 0.910 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.105 0.895 26 H 0.036 0.964 27 H 0.103 0.897 28 H 0.067 0.933 29 H 0.000 1.000 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.041 0.959 35 H 0.106 0.894 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.554 -0.750 5.423 18.388 hybrid contribution 1.444 -0.536 0.028 1.540 sum -16.110 -1.286 5.451 17.056 Atomic orbital electron populations 1.21655 0.91757 1.02621 1.02312 1.22721 0.97284 0.95304 0.89772 0.93791 1.22478 0.95106 0.99321 0.97634 1.22407 0.90800 0.97032 0.93379 0.94231 1.62038 1.01887 1.58800 1.03871 1.22227 1.01844 0.98418 0.88367 1.19940 0.88430 0.91564 0.95572 1.21265 0.90377 1.17869 1.25939 0.94316 1.25820 0.95349 0.99525 0.98134 1.70044 0.98688 1.44043 1.45995 0.85762 0.78392 0.79401 0.79722 1.19276 1.20475 1.17405 1.23030 0.90464 0.99996 0.95026 1.65412 1.16612 1.37834 1.04034 1.22558 1.02795 0.95207 0.92952 0.92095 0.90957 0.91887 0.90435 0.89535 0.96410 0.89731 0.93303 0.99957 0.95212 0.92397 0.90986 0.94386 0.95928 0.89383 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 9.35 71.98 0.67 -1.64 16 2 C 0.06 1.43 2.88 45.06 0.13 1.56 16 3 H 0.04 1.18 7.90 -2.39 -0.02 1.16 16 4 C -0.11 -2.90 5.65 31.49 0.18 -2.73 16 5 C 0.07 2.49 2.79 45.81 0.13 2.62 16 6 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 7 N -0.54 -22.78 4.54 -896.34 -4.07 -26.85 16 8 C 0.04 1.51 9.08 127.69 1.16 2.67 16 9 C 0.17 8.44 3.65 85.56 0.31 8.75 16 10 C -0.52 -30.34 9.07 25.60 0.23 -30.11 16 11 H 0.04 2.53 7.35 -2.91 -0.02 2.51 16 12 C 0.01 0.54 5.47 84.66 0.46 1.00 16 13 N -0.95 -59.76 13.96 21.45 0.30 -59.46 16 14 Si 0.94 44.64 27.47 68.60 1.88 46.52 16 15 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 17 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 18 C 0.04 1.45 4.77 86.45 0.41 1.86 16 19 N -0.51 -14.07 5.34 -882.65 -4.72 -18.79 16 20 C 0.01 0.31 9.41 127.69 1.20 1.51 16 21 H 0.06 1.01 7.53 -2.39 -0.02 0.99 16 22 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 23 H 0.06 1.16 8.12 -2.39 -0.02 1.14 16 24 H 0.08 2.14 6.38 -2.38 -0.02 2.13 16 25 H 0.09 2.01 7.85 -2.39 -0.02 1.99 16 26 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.08 2.63 6.17 -2.38 -0.01 2.61 16 28 H 0.05 2.14 6.86 -2.39 -0.02 2.13 16 29 H -0.02 -0.84 7.55 -2.39 -0.02 -0.86 16 30 H 0.03 1.46 5.82 -2.39 -0.01 1.44 16 31 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 32 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 33 H 0.04 1.44 7.72 -2.39 -0.02 1.42 16 34 H 0.02 0.54 7.97 -2.39 -0.02 0.53 16 35 H 0.09 1.62 7.53 -2.38 -0.02 1.61 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -65.68 277.96 -0.75 -66.43 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: 0.97 Total: 6.64 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 4.89 Total: -14.50 kcal Atomic # 7 Polarization: -96.60 SS G_CDS: -8.49 Total: -105.09 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.52 kcal Total: -65.68 -0.75 -66.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307727219.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.704 kcal (2) G-P(sol) polarization free energy of solvation -65.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds