Wall clock time and date at job start Mon Mar 30 2020 02:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08992 * 109.90797 * 2 1 4 4 C 1.53999 * 110.07858 * 121.20804 * 2 1 3 5 5 C 1.54597 * 105.13604 * 120.66858 * 4 2 1 6 6 H 1.08997 * 110.87699 * 263.52274 * 5 4 2 7 7 N 1.46903 * 110.71902 * 140.31342 * 5 4 2 8 8 C 1.46900 * 110.99833 * 187.94123 * 7 5 4 9 9 C 1.46905 * 110.99977 * 63.99177 * 7 5 4 10 10 C 1.50700 * 109.47058 * 189.99753 * 9 7 5 11 11 H 1.08007 * 119.99901 * 359.97438 * 10 9 7 12 12 C 1.37874 * 119.99968 * 180.27079 * 10 9 7 13 13 N 1.31508 * 119.99965 * 359.73231 * 12 10 9 14 14 Si 1.86801 * 120.00036 * 179.72119 * 12 10 9 15 15 H 1.48503 * 109.46886 * 60.00813 * 14 12 10 16 16 H 1.48504 * 109.47284 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47214 * 300.00629 * 14 12 10 18 18 C 1.54934 * 102.92219 * 21.95766 * 5 4 2 19 19 N 1.47899 * 109.91491 * 238.89546 * 2 1 3 20 20 C 1.46904 * 110.99924 * 94.61090 * 19 2 1 21 21 H 1.08998 * 109.47073 * 179.64600 * 1 2 3 22 22 H 1.08996 * 109.46900 * 299.65073 * 1 2 3 23 23 H 1.09008 * 109.46614 * 59.64998 * 1 2 3 24 24 H 1.09000 * 110.30734 * 1.75562 * 4 2 1 25 25 H 1.08999 * 110.30838 * 239.58586 * 4 2 1 26 26 H 1.09002 * 109.47505 * 301.40706 * 8 7 5 27 27 H 1.09006 * 109.46964 * 61.40812 * 8 7 5 28 28 H 1.08999 * 109.47363 * 181.40352 * 8 7 5 29 29 H 1.09003 * 109.47204 * 69.99926 * 9 7 5 30 30 H 1.09001 * 109.46517 * 309.99521 * 9 7 5 31 31 H 0.97003 * 120.00298 * 180.02562 * 13 12 10 32 32 H 1.08999 * 110.66738 * 81.01764 * 18 5 4 33 33 H 1.09000 * 110.66608 * 203.98145 * 18 5 4 34 34 H 1.09002 * 109.47142 * 177.51998 * 20 19 2 35 35 H 1.09001 * 109.46718 * 297.51629 * 20 19 2 36 36 H 1.09000 * 109.47081 * 57.51724 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9012 1.0248 0.0000 4 6 2.0588 -0.7494 1.2371 5 6 2.9123 -1.9083 0.6727 6 1 2.3329 -2.8304 0.6260 7 7 4.1262 -2.0996 1.4777 8 6 5.0312 -3.0674 0.8435 9 6 3.7903 -2.5119 2.8471 10 6 5.0282 -2.4606 3.7050 11 1 5.9704 -2.1529 3.2758 12 6 4.9593 -2.8123 5.0363 13 7 3.8123 -3.1875 5.5588 14 14 6.4954 -2.7562 6.0979 15 1 7.0314 -1.3715 6.1200 16 1 6.1571 -3.1786 7.4808 17 1 7.5187 -3.6743 5.5367 18 6 3.2708 -1.4132 -0.7509 19 7 2.0339 -0.7184 -1.1906 20 6 2.3168 0.2158 -2.2885 21 1 -0.3633 -1.0276 -0.0063 22 1 -0.3633 0.5084 0.8931 23 1 -0.3633 0.5193 -0.8869 24 1 1.2290 -1.1421 1.8248 25 1 2.6747 -0.0875 1.8458 26 1 4.5158 -4.0199 0.7198 27 1 5.3393 -2.6916 -0.1322 28 1 5.9102 -3.2090 1.4724 29 1 3.3988 -3.5291 2.8346 30 1 3.0373 -1.8376 3.2550 31 1 3.7637 -3.4346 6.4956 32 1 4.1105 -0.7192 -0.7167 33 1 3.4956 -2.2551 -1.4057 34 1 2.7272 -0.3331 -3.1360 35 1 1.3945 0.7126 -2.5896 36 1 3.0387 0.9611 -1.9544 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307727221.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:53 Heat of formation + Delta-G solvation = -14.713347 kcal Electronic energy + Delta-G solvation = -14743.191194 eV Core-core repulsion = 12454.240250 eV Total energy + Delta-G solvation = -2288.950944 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.49247 -37.51170 -34.67361 -32.88135 -31.40323 -29.26464 -27.38154 -26.16970 -25.32750 -23.32138 -21.29504 -20.62607 -18.53298 -17.26593 -16.63830 -16.61038 -15.76289 -15.17611 -14.96497 -14.90096 -14.44798 -13.99428 -13.87113 -13.44037 -13.13362 -13.04496 -12.81872 -12.65814 -12.49029 -12.35077 -12.23484 -12.03982 -11.71844 -11.61669 -11.49827 -11.22739 -10.61046 -9.42906 -9.06546 -8.20707 -6.31140 1.40708 1.44060 1.52012 2.39688 2.90555 3.11884 3.45377 3.64664 3.75123 4.07571 4.27188 4.39619 4.51069 4.53596 4.56629 4.60085 4.71776 4.79729 4.88456 4.93102 4.99462 5.02527 5.03992 5.13003 5.15653 5.22321 5.31260 5.40808 5.64251 5.87304 6.06130 6.11203 6.32730 6.64068 6.84954 7.38510 8.90421 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048730 B = 0.007145 C = 0.006605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.456862 B = 3917.611481 C = 4237.983537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.068 3.932 3 H 0.058 0.942 4 C -0.116 4.116 5 C 0.075 3.925 6 H 0.028 0.972 7 N -0.540 5.540 8 C 0.039 3.961 9 C 0.209 3.791 10 C -0.526 4.526 11 H 0.063 0.937 12 C 0.001 3.999 13 N -0.935 5.935 14 Si 0.970 3.030 15 H -0.268 1.268 16 H -0.283 1.283 17 H -0.267 1.267 18 C 0.057 3.943 19 N -0.527 5.527 20 C 0.018 3.982 21 H 0.051 0.949 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.009 0.991 27 H 0.081 0.919 28 H 0.058 0.942 29 H -0.044 1.044 30 H 0.010 0.990 31 H 0.265 0.735 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.800 5.908 -13.066 14.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.041 4.041 3 H 0.076 0.924 4 C -0.154 4.154 5 C -0.035 4.035 6 H 0.046 0.954 7 N -0.265 5.265 8 C -0.109 4.109 9 C 0.083 3.917 10 C -0.564 4.564 11 H 0.082 0.918 12 C -0.197 4.197 13 N -0.575 5.575 14 Si 0.795 3.205 15 H -0.193 1.193 16 H -0.208 1.208 17 H -0.192 1.192 18 C -0.071 4.071 19 N -0.252 5.252 20 C -0.131 4.131 21 H 0.070 0.930 22 H 0.082 0.918 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.027 0.973 27 H 0.099 0.901 28 H 0.077 0.923 29 H -0.027 1.027 30 H 0.028 0.972 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -3.030 5.944 -13.096 14.698 hybrid contribution 0.693 -0.490 1.245 1.506 sum -2.337 5.454 -11.852 13.254 Atomic orbital electron populations 1.21700 0.92679 1.02026 1.02093 1.22379 0.97137 0.95821 0.88722 0.92426 1.22448 0.98478 0.97004 0.97505 1.22512 0.90717 0.96629 0.93606 0.95435 1.62200 1.14241 1.47272 1.02755 1.22230 0.96801 0.92656 0.99237 1.19362 0.95854 0.91491 0.84985 1.21454 0.95773 1.44412 0.94783 0.91836 1.25928 0.99612 0.94736 0.99395 1.70085 1.26887 1.46472 1.14105 0.85422 0.78960 0.78936 0.77213 1.19297 1.20816 1.19182 1.23093 0.91720 0.98603 0.93668 1.64689 1.26061 1.27326 1.07133 1.22571 1.01405 0.94909 0.94167 0.92980 0.91809 0.91276 0.92302 0.92191 0.97264 0.90088 0.92269 1.02678 0.97216 0.92667 0.92965 0.89531 0.90318 0.90046 0.95352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.33 71.98 0.67 -2.33 16 2 C 0.07 1.90 3.08 45.06 0.14 2.04 16 3 H 0.06 1.53 7.69 -2.39 -0.02 1.51 16 4 C -0.12 -4.17 5.01 31.48 0.16 -4.01 16 5 C 0.07 2.84 2.75 46.12 0.13 2.97 16 6 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 7 N -0.54 -24.09 4.59 -894.50 -4.10 -28.19 16 8 C 0.04 1.53 9.13 127.69 1.17 2.70 16 9 C 0.21 11.48 4.61 85.56 0.39 11.87 16 10 C -0.53 -30.33 8.44 25.60 0.22 -30.12 16 11 H 0.06 3.57 7.13 -2.91 -0.02 3.55 16 12 C 0.00 0.07 5.46 84.65 0.46 0.54 16 13 N -0.94 -57.13 13.29 21.45 0.28 -56.84 16 14 Si 0.97 44.64 29.54 68.60 2.03 46.67 16 15 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 18 C 0.06 1.73 4.82 86.65 0.42 2.14 16 19 N -0.53 -14.25 5.18 -884.05 -4.58 -18.83 16 20 C 0.02 0.36 9.41 127.69 1.20 1.56 16 21 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 24 H 0.06 2.18 7.69 -2.39 -0.02 2.16 16 25 H 0.06 2.39 7.93 -2.39 -0.02 2.37 16 26 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.08 2.58 7.08 -2.38 -0.02 2.57 16 28 H 0.06 2.50 6.73 -2.39 -0.02 2.48 16 29 H -0.04 -2.68 8.12 -2.39 -0.02 -2.70 16 30 H 0.01 0.57 6.91 -2.39 -0.02 0.55 16 31 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.05 1.60 8.00 -2.39 -0.02 1.58 16 33 H 0.09 2.39 8.03 -2.39 -0.02 2.37 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.03 0.57 7.99 -2.39 -0.02 0.56 16 Total: -1.00 -63.99 284.56 -0.41 -64.40 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 1.01 Total: 5.44 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 4.95 Total: -12.64 kcal Atomic # 7 Polarization: -95.47 SS G_CDS: -8.40 Total: -103.87 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -63.99 -0.41 -64.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307727221.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.688 kcal (2) G-P(sol) polarization free energy of solvation -63.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds