Wall clock time and date at job start Mon Mar 30 2020 02:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 110.90648 * 2 1 4 4 C 1.54913 * 110.98933 * 236.13186 * 2 1 3 5 5 N 1.47846 * 104.79262 * 204.84117 * 4 2 1 6 6 C 1.46906 * 110.99692 * 146.36844 * 5 4 2 7 7 C 1.47442 * 108.57085 * 24.09761 * 5 4 2 8 8 C 1.54318 * 107.23070 * 359.00888 * 7 5 4 9 9 H 1.09000 * 110.70255 * 96.27783 * 8 7 5 10 10 N 1.46905 * 110.70223 * 219.33595 * 8 7 5 11 11 C 1.46906 * 110.99539 * 273.54621 * 10 8 7 12 12 C 1.52998 * 109.46836 * 180.02562 * 11 10 8 13 13 C 1.50696 * 109.47188 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00332 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99983 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00210 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00019 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46845 * 269.99914 * 17 15 13 19 19 H 1.48503 * 109.47399 * 29.99403 * 17 15 13 20 20 H 1.48498 * 109.47295 * 150.00010 * 17 15 13 21 21 H 1.09002 * 109.47375 * 296.13222 * 1 2 3 22 22 H 1.09000 * 109.47314 * 56.13638 * 1 2 3 23 23 H 1.09003 * 109.47326 * 176.13738 * 1 2 3 24 24 H 1.08998 * 110.36970 * 86.01001 * 4 2 1 25 25 H 1.08997 * 110.37326 * 323.66702 * 4 2 1 26 26 H 1.08997 * 109.46725 * 299.14866 * 6 5 4 27 27 H 1.08999 * 109.47455 * 59.15163 * 6 5 4 28 28 H 1.08997 * 109.46631 * 179.15256 * 6 5 4 29 29 H 1.09000 * 109.88413 * 239.60617 * 7 5 4 30 30 H 1.08997 * 109.88987 * 118.41977 * 7 5 4 31 31 H 1.00900 * 111.00007 * 149.59770 * 10 8 7 32 32 H 1.08996 * 109.47057 * 60.00743 * 11 10 8 33 33 H 1.08997 * 109.47577 * 300.00100 * 11 10 8 34 34 H 1.09004 * 109.47223 * 59.99693 * 12 11 10 35 35 H 1.09010 * 109.47071 * 300.00045 * 12 11 10 36 36 H 0.97000 * 119.99462 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9189 1.0181 0.0000 4 6 2.0849 -0.8060 -1.2009 5 7 3.4312 -1.2421 -0.7731 6 6 3.7611 -2.5590 -1.3344 7 6 3.4691 -1.2712 0.7005 8 6 2.0857 -0.8072 1.2027 9 1 1.4485 -1.6637 1.4229 10 7 2.2242 0.0526 2.3857 11 6 2.2825 -0.7492 3.6153 12 6 2.4258 0.1790 4.8231 13 6 2.4862 -0.6435 6.0843 14 1 2.4278 -1.7205 6.0300 15 6 2.6150 -0.0209 7.3078 16 7 2.6857 1.2907 7.3741 17 14 2.6893 -1.0404 8.8713 18 1 1.3150 -1.2410 9.3970 19 1 3.3027 -2.3596 8.5735 20 1 3.5088 -0.3311 9.8864 21 1 -0.3634 0.4526 0.9226 22 1 -0.3634 0.5726 -0.8533 23 1 -0.3634 -1.0253 -0.0692 24 1 2.1544 -0.1712 -2.0843 25 1 1.4523 -1.6704 -1.4025 26 1 3.0398 -3.2957 -0.9807 27 1 3.7257 -2.5094 -2.4227 28 1 4.7624 -2.8490 -1.0162 29 1 4.2420 -0.5945 1.0650 30 1 3.6681 -2.2856 1.0464 31 1 1.4770 0.7293 2.4304 32 1 3.1389 -1.4219 3.5700 33 1 1.3669 -1.3326 3.7125 34 1 1.5692 0.8516 4.8681 35 1 3.3413 0.7627 4.7261 36 1 2.6475 1.8200 6.5621 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308254536.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:06 Heat of formation + Delta-G solvation = -13.254249 kcal Electronic energy + Delta-G solvation = -14301.265799 eV Core-core repulsion = 12012.378126 eV Total energy + Delta-G solvation = -2288.887673 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.36267 -35.55226 -33.53802 -32.46747 -29.60505 -27.70260 -26.76022 -24.33784 -23.15137 -21.34028 -20.25620 -20.04914 -16.82491 -16.24357 -15.40922 -14.71533 -14.37913 -14.10066 -13.74301 -13.70085 -13.11867 -13.07270 -12.53232 -12.30913 -12.03001 -11.89555 -11.52626 -11.17085 -11.10114 -10.84960 -10.80516 -10.39746 -10.16280 -10.11511 -9.71588 -8.56798 -8.39904 -8.30184 -7.92784 -6.34749 -4.03588 3.44028 3.48207 3.63983 3.96904 4.44646 4.52550 4.61364 4.73989 5.10338 5.22406 5.29524 5.37688 5.41037 5.43279 5.45537 5.55008 5.72201 5.76434 5.79795 5.91689 6.05066 6.15819 6.19938 6.24886 6.42007 6.81995 6.91821 7.03169 7.27895 7.50182 7.68819 7.84670 8.25585 8.48188 8.90491 9.68950 11.06514 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048995 B = 0.005674 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.354293 B = 4933.849774 C = 5236.329825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 H 0.093 0.907 4 C 0.048 3.952 5 N -0.534 5.534 6 C 0.020 3.980 7 C 0.050 3.950 8 C 0.070 3.930 9 H 0.044 0.956 10 N -0.680 5.680 11 C 0.073 3.927 12 C 0.012 3.988 13 C -0.603 4.603 14 H 0.047 0.953 15 C 0.015 3.985 16 N -0.913 5.913 17 Si 1.072 2.928 18 H -0.288 1.288 19 H -0.289 1.289 20 H -0.284 1.284 21 H 0.059 0.941 22 H 0.058 0.942 23 H 0.052 0.948 24 H 0.078 0.922 25 H 0.044 0.956 26 H 0.024 0.976 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.337 0.663 32 H 0.059 0.941 33 H 0.016 0.984 34 H 0.004 0.996 35 H 0.017 0.983 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.499 -5.263 -16.388 17.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 H 0.112 0.888 4 C -0.080 4.080 5 N -0.258 5.258 6 C -0.129 4.129 7 C -0.078 4.078 8 C -0.041 4.041 9 H 0.062 0.938 10 N -0.311 5.311 11 C -0.055 4.055 12 C -0.025 4.025 13 C -0.642 4.642 14 H 0.066 0.934 15 C -0.188 4.188 16 N -0.549 5.549 17 Si 0.901 3.099 18 H -0.215 1.215 19 H -0.215 1.215 20 H -0.209 1.209 21 H 0.078 0.922 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.097 0.903 25 H 0.062 0.938 26 H 0.043 0.957 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.156 0.844 32 H 0.078 0.922 33 H 0.034 0.966 34 H 0.022 0.978 35 H 0.035 0.965 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.285 -4.782 -14.979 15.776 hybrid contribution -1.678 -1.116 -1.302 2.400 sum -2.963 -5.899 -16.281 17.569 Atomic orbital electron populations 1.21746 0.94547 1.01695 1.02117 1.22461 0.95315 1.00574 0.94001 0.88821 1.23063 0.88703 0.98225 0.98038 1.63606 1.27102 1.26390 1.08673 1.22540 1.00841 0.89382 1.00092 1.22916 0.98267 1.00610 0.86000 1.22758 0.95479 0.94834 0.91065 0.93811 1.60617 1.51312 1.17269 1.01908 1.22051 0.98626 0.96057 0.88774 1.19200 0.96477 0.95024 0.91816 1.22014 1.55414 0.94223 0.92565 0.93445 1.25839 0.93775 0.97309 1.01922 1.70740 1.46473 1.05220 1.32454 0.83504 0.76747 0.74553 0.75145 1.21523 1.21526 1.20931 0.92218 0.92278 0.92903 0.90339 0.93761 0.95728 0.91624 0.91350 0.88981 0.93239 0.84446 0.92219 0.96610 0.97766 0.96455 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.31 37.16 0.35 -1.19 16 2 C -0.10 -1.30 3.07 -88.48 -0.27 -1.57 16 3 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 4 C 0.05 0.55 6.20 -2.29 -0.01 0.54 16 5 N -0.53 -6.99 5.44 -239.52 -1.30 -8.29 16 6 C 0.02 0.22 9.12 60.07 0.55 0.76 16 7 C 0.05 0.75 6.58 -2.84 -0.02 0.73 16 8 C 0.07 1.06 2.70 -65.89 -0.18 0.88 16 9 H 0.04 0.69 7.79 -51.93 -0.40 0.28 16 10 N -0.68 -12.26 6.29 -104.80 -0.66 -12.92 16 11 C 0.07 1.58 5.48 -3.82 -0.02 1.56 16 12 C 0.01 0.32 4.54 -27.89 -0.13 0.20 16 13 C -0.60 -17.57 9.11 -34.44 -0.31 -17.88 16 14 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 15 C 0.02 0.45 5.46 -17.82 -0.10 0.36 16 16 N -0.91 -28.46 13.65 55.43 0.76 -27.70 16 17 Si 1.07 25.70 29.90 -169.99 -5.08 20.62 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H 0.06 0.68 8.12 -51.93 -0.42 0.25 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.55 8.07 -51.93 -0.42 0.13 16 24 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.04 0.48 7.63 -51.93 -0.40 0.08 16 26 H 0.02 0.26 8.10 -51.93 -0.42 -0.16 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 1.54 8.03 -51.93 -0.42 1.12 16 30 H 0.05 0.72 7.58 -51.93 -0.39 0.33 16 31 H 0.34 5.84 8.48 -39.29 -0.33 5.51 16 32 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 33 H 0.02 0.34 8.08 -51.93 -0.42 -0.08 16 34 H 0.00 0.11 8.01 -51.93 -0.42 -0.30 16 35 H 0.02 0.48 8.01 -51.92 -0.42 0.07 16 36 H 0.27 8.41 7.22 -40.82 -0.29 8.11 16 LS Contribution 289.89 15.07 4.37 4.37 Total: -1.00 -30.77 289.89 -8.56 -39.33 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -6.49 Total: 0.21 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -0.15 Total: -15.62 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -1.21 Total: -48.91 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.77 -8.56 -39.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308254536.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.076 kcal (2) G-P(sol) polarization free energy of solvation -30.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds