Wall clock time and date at job start Mon Mar 30 2020 02:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 110.90648 * 2 1 4 4 C 1.54913 * 110.98933 * 236.13186 * 2 1 3 5 5 N 1.47846 * 104.79262 * 204.84117 * 4 2 1 6 6 C 1.46906 * 110.99692 * 146.36844 * 5 4 2 7 7 C 1.47442 * 108.57085 * 24.09761 * 5 4 2 8 8 C 1.54318 * 107.23070 * 359.00888 * 7 5 4 9 9 H 1.09000 * 110.70255 * 96.27783 * 8 7 5 10 10 N 1.46905 * 110.70223 * 219.33595 * 8 7 5 11 11 C 1.46906 * 110.99539 * 273.54621 * 10 8 7 12 12 C 1.52998 * 109.46836 * 180.02562 * 11 10 8 13 13 C 1.50696 * 109.47188 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00332 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99983 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00210 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00019 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46845 * 269.99914 * 17 15 13 19 19 H 1.48503 * 109.47399 * 29.99403 * 17 15 13 20 20 H 1.48498 * 109.47295 * 150.00010 * 17 15 13 21 21 H 1.09002 * 109.47375 * 296.13222 * 1 2 3 22 22 H 1.09000 * 109.47314 * 56.13638 * 1 2 3 23 23 H 1.09003 * 109.47326 * 176.13738 * 1 2 3 24 24 H 1.08998 * 110.36970 * 86.01001 * 4 2 1 25 25 H 1.08997 * 110.37326 * 323.66702 * 4 2 1 26 26 H 1.08997 * 109.46725 * 299.14866 * 6 5 4 27 27 H 1.08999 * 109.47455 * 59.15163 * 6 5 4 28 28 H 1.08997 * 109.46631 * 179.15256 * 6 5 4 29 29 H 1.09000 * 109.88413 * 239.60617 * 7 5 4 30 30 H 1.08997 * 109.88987 * 118.41977 * 7 5 4 31 31 H 1.00900 * 111.00007 * 149.59770 * 10 8 7 32 32 H 1.08996 * 109.47057 * 60.00743 * 11 10 8 33 33 H 1.08997 * 109.47577 * 300.00100 * 11 10 8 34 34 H 1.09004 * 109.47223 * 59.99693 * 12 11 10 35 35 H 1.09010 * 109.47071 * 300.00045 * 12 11 10 36 36 H 0.97000 * 119.99462 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9189 1.0181 0.0000 4 6 2.0849 -0.8060 -1.2009 5 7 3.4312 -1.2421 -0.7731 6 6 3.7611 -2.5590 -1.3344 7 6 3.4691 -1.2712 0.7005 8 6 2.0857 -0.8072 1.2027 9 1 1.4485 -1.6637 1.4229 10 7 2.2242 0.0526 2.3857 11 6 2.2825 -0.7492 3.6153 12 6 2.4258 0.1790 4.8231 13 6 2.4862 -0.6435 6.0843 14 1 2.4278 -1.7205 6.0300 15 6 2.6150 -0.0209 7.3078 16 7 2.6857 1.2907 7.3741 17 14 2.6893 -1.0404 8.8713 18 1 1.3150 -1.2410 9.3970 19 1 3.3027 -2.3596 8.5735 20 1 3.5088 -0.3311 9.8864 21 1 -0.3634 0.4526 0.9226 22 1 -0.3634 0.5726 -0.8533 23 1 -0.3634 -1.0253 -0.0692 24 1 2.1544 -0.1712 -2.0843 25 1 1.4523 -1.6704 -1.4025 26 1 3.0398 -3.2957 -0.9807 27 1 3.7257 -2.5094 -2.4227 28 1 4.7624 -2.8490 -1.0162 29 1 4.2420 -0.5945 1.0650 30 1 3.6681 -2.2856 1.0464 31 1 1.4770 0.7293 2.4304 32 1 3.1389 -1.4219 3.5700 33 1 1.3669 -1.3326 3.7125 34 1 1.5692 0.8516 4.8681 35 1 3.3413 0.7627 4.7261 36 1 2.6475 1.8200 6.5621 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308254536.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:06 Heat of formation + Delta-G solvation = -35.418170 kcal Electronic energy + Delta-G solvation = -14302.226899 eV Core-core repulsion = 12012.378126 eV Total energy + Delta-G solvation = -2289.848773 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.46664 -37.15893 -35.32344 -33.82137 -31.24047 -29.05373 -27.79402 -26.03610 -24.59977 -23.05756 -21.51035 -21.20775 -18.93934 -17.54281 -16.48684 -16.29309 -15.67994 -15.58415 -15.33943 -14.88702 -14.62899 -14.35276 -13.84550 -13.74587 -13.34737 -13.21966 -12.77660 -12.70394 -12.37809 -12.29432 -11.99343 -11.94579 -11.83683 -11.69497 -11.43849 -10.73784 -10.56623 -9.56829 -9.26392 -8.71730 -6.42272 1.51664 1.61383 1.79314 2.54983 2.93973 3.14275 3.21563 3.46820 3.68677 4.03046 4.18955 4.27208 4.34610 4.38717 4.42568 4.50186 4.52612 4.64736 4.78400 4.81333 4.84802 4.93857 4.96366 5.05472 5.16229 5.22504 5.30477 5.39288 5.88552 5.89956 6.07320 6.12006 6.16540 6.37510 6.56554 7.40429 8.69619 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048995 B = 0.005674 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.354293 B = 4933.849774 C = 5236.329825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 H 0.084 0.916 4 C 0.051 3.949 5 N -0.546 5.546 6 C 0.019 3.981 7 C 0.054 3.946 8 C 0.068 3.932 9 H 0.043 0.957 10 N -0.683 5.683 11 C 0.093 3.907 12 C 0.016 3.984 13 C -0.622 4.622 14 H 0.050 0.950 15 C -0.038 4.038 16 N -0.936 5.936 17 Si 1.122 2.878 18 H -0.271 1.271 19 H -0.269 1.269 20 H -0.281 1.281 21 H 0.049 0.951 22 H 0.079 0.921 23 H 0.058 0.942 24 H 0.094 0.906 25 H 0.057 0.943 26 H 0.028 0.972 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.341 0.659 32 H 0.054 0.946 33 H 0.017 0.983 34 H -0.010 1.010 35 H -0.008 1.008 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.136 -6.557 -17.383 18.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.117 4.117 3 H 0.103 0.897 4 C -0.077 4.077 5 N -0.270 5.270 6 C -0.129 4.129 7 C -0.075 4.075 8 C -0.043 4.043 9 H 0.061 0.939 10 N -0.315 5.315 11 C -0.036 4.036 12 C -0.021 4.021 13 C -0.660 4.660 14 H 0.068 0.932 15 C -0.235 4.235 16 N -0.573 5.573 17 Si 0.943 3.057 18 H -0.196 1.196 19 H -0.194 1.194 20 H -0.207 1.207 21 H 0.068 0.932 22 H 0.098 0.902 23 H 0.077 0.923 24 H 0.112 0.888 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.160 0.840 32 H 0.073 0.927 33 H 0.035 0.965 34 H 0.008 0.992 35 H 0.010 0.990 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.931 -6.078 -16.019 17.242 hybrid contribution -1.464 -0.688 -1.078 1.944 sum -3.394 -6.766 -17.097 18.698 Atomic orbital electron populations 1.21722 0.93005 1.02368 1.02573 1.22427 0.96529 0.99745 0.92991 0.89722 1.23123 0.87955 0.98736 0.97842 1.63591 1.28263 1.27983 1.07166 1.22604 1.00928 0.88236 1.01131 1.22767 0.97265 0.99822 0.87617 1.22841 0.96028 0.94804 0.90650 0.93899 1.60510 1.51830 1.17504 1.01611 1.21653 0.98378 0.94981 0.88579 1.19092 0.94456 0.95105 0.93465 1.22441 1.55029 0.94699 0.93857 0.93172 1.27489 0.92544 0.97545 1.05930 1.70882 1.48444 1.06256 1.31717 0.82877 0.77845 0.73746 0.71227 1.19603 1.19422 1.20686 0.93187 0.90198 0.92337 0.88776 0.92431 0.95375 0.89697 0.91343 0.91444 0.93352 0.84021 0.92716 0.96493 0.99217 0.99011 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.31 71.98 0.67 -2.00 16 2 C -0.10 -2.26 3.07 -9.41 -0.03 -2.29 16 3 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 4 C 0.05 1.04 6.20 86.77 0.54 1.58 16 5 N -0.55 -13.35 5.44 -911.69 -4.96 -18.31 16 6 C 0.02 0.37 9.12 127.69 1.16 1.53 16 7 C 0.05 1.58 6.58 86.65 0.57 2.15 16 8 C 0.07 1.99 2.70 46.10 0.12 2.12 16 9 H 0.04 1.30 7.79 -2.39 -0.02 1.28 16 10 N -0.68 -24.78 6.29 -485.48 -3.05 -27.83 16 11 C 0.09 4.05 5.48 86.30 0.47 4.53 16 12 C 0.02 0.88 4.54 29.85 0.14 1.02 16 13 C -0.62 -36.53 9.11 25.60 0.23 -36.30 16 14 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 15 C -0.04 -2.22 5.46 84.65 0.46 -1.76 16 16 N -0.94 -59.30 13.65 21.45 0.29 -59.01 16 17 Si 1.12 50.97 29.90 68.60 2.05 53.02 16 18 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 19 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H 0.05 1.06 8.12 -2.39 -0.02 1.04 16 22 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 23 H 0.06 1.06 8.07 -2.39 -0.02 1.04 16 24 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.06 1.04 7.63 -2.39 -0.02 1.03 16 26 H 0.03 0.52 8.10 -2.39 -0.02 0.50 16 27 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.07 2.29 8.03 -2.39 -0.02 2.28 16 30 H 0.05 1.39 7.58 -2.39 -0.02 1.37 16 31 H 0.34 11.90 8.48 -89.69 -0.76 11.13 16 32 H 0.05 2.42 8.13 -2.39 -0.02 2.40 16 33 H 0.02 0.73 8.08 -2.39 -0.02 0.71 16 34 H -0.01 -0.59 8.01 -2.38 -0.02 -0.61 16 35 H -0.01 -0.50 8.01 -2.38 -0.02 -0.52 16 36 H 0.26 16.47 7.22 -92.71 -0.67 15.80 16 Total: -1.00 -66.01 289.89 -0.97 -66.98 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.36 Total: 14.58 kcal Atomic # 6 Polarization: -33.77 SS G_CDS: 4.34 Total: -29.43 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -7.73 Total: -105.15 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 2.05 Total: 53.02 kcal Total: -66.01 -0.97 -66.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308254536.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.564 kcal (2) G-P(sol) polarization free energy of solvation -66.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds