Wall clock time and date at job start Mon Mar 30 2020 02:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.36662 * 2 1 4 4 C 1.54379 * 110.32591 * 122.17989 * 2 1 3 5 5 N 1.48553 * 104.59668 * 142.75228 * 4 2 1 6 6 C 1.46900 * 111.00264 * 200.96104 * 5 4 2 7 7 C 1.48563 * 104.22203 * 320.51564 * 5 4 2 8 8 C 1.54260 * 110.32541 * 237.81877 * 2 1 3 9 9 H 1.09002 * 110.32260 * 0.09864 * 8 2 1 10 10 N 1.46897 * 110.32429 * 122.20401 * 8 2 1 11 11 C 1.46902 * 111.00010 * 204.99903 * 10 8 2 12 12 C 1.53004 * 109.47130 * 180.02562 * 11 10 8 13 13 C 1.50699 * 109.46847 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00511 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99783 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99573 * 180.27665 * 15 13 12 17 17 Si 1.86800 * 119.99781 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46758 * 89.99934 * 17 15 13 19 19 H 1.48499 * 109.47026 * 209.99782 * 17 15 13 20 20 H 1.48496 * 109.47474 * 329.99818 * 17 15 13 21 21 H 1.09004 * 109.46572 * 182.18473 * 1 2 3 22 22 H 1.08996 * 109.47100 * 302.18160 * 1 2 3 23 23 H 1.08998 * 109.47355 * 62.18808 * 1 2 3 24 24 H 1.09004 * 110.40996 * 261.53005 * 4 2 1 25 25 H 1.08997 * 110.41000 * 23.85153 * 4 2 1 26 26 H 1.09002 * 109.46840 * 60.11972 * 6 5 4 27 27 H 1.08998 * 109.47518 * 180.12427 * 6 5 4 28 28 H 1.09007 * 109.46697 * 300.12634 * 6 5 4 29 29 H 1.09002 * 110.41202 * 280.70486 * 7 5 4 30 30 H 1.08998 * 110.41530 * 158.26286 * 7 5 4 31 31 H 1.00901 * 111.00395 * 328.95241 * 10 8 2 32 32 H 1.08998 * 109.47017 * 59.99899 * 11 10 8 33 33 H 1.08997 * 109.46952 * 300.00197 * 11 10 8 34 34 H 1.08992 * 109.47264 * 60.00239 * 12 11 10 35 35 H 1.09005 * 109.46939 * 299.99505 * 12 11 10 36 36 H 0.97004 * 119.99485 * 179.72881 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0663 -0.7710 1.2253 5 7 3.2694 -1.4827 0.7226 6 6 3.6070 -2.6215 1.5869 7 6 2.8808 -1.9421 -0.6357 8 6 2.0658 -0.7704 -1.2243 9 1 1.2388 -1.1471 -1.8262 10 7 2.9315 0.0971 -2.0342 11 6 2.9710 -0.3552 -3.4313 12 6 3.8808 0.5704 -4.2415 13 6 3.9208 0.1067 -5.6749 14 1 3.3536 -0.7610 -5.9778 15 6 4.6806 0.7910 -6.5998 16 7 4.7111 0.3896 -7.8518 17 14 5.6599 2.2931 -6.0763 18 1 7.0163 1.8729 -5.6418 19 1 5.7755 3.2322 -7.2209 20 1 4.9664 2.9684 -4.9502 21 1 -0.3632 -1.0270 0.0392 22 1 -0.3633 0.5473 0.8697 23 1 -0.3634 0.4795 -0.9089 24 1 2.3394 -0.0778 2.0209 25 1 1.3222 -1.4833 1.5816 26 1 2.7720 -3.3219 1.6076 27 1 4.4926 -3.1235 1.1973 28 1 3.8066 -2.2642 2.5972 29 1 2.2649 -2.8393 -0.5719 30 1 3.7671 -2.1308 -1.2414 31 1 2.6363 1.0601 -1.9742 32 1 1.9644 -0.3327 -3.8491 33 1 3.3589 -1.3730 -3.4729 34 1 4.8872 0.5474 -3.8237 35 1 3.4932 1.5883 -4.2000 36 1 5.2426 0.8733 -8.5034 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308254537.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:09 Heat of formation + Delta-G solvation = -3.032435 kcal Electronic energy + Delta-G solvation = -14326.582950 eV Core-core repulsion = 12038.138529 eV Total energy + Delta-G solvation = -2288.444422 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.32967 -35.43812 -33.36077 -32.37939 -30.04635 -27.89813 -26.89485 -24.62702 -23.03208 -21.16387 -20.23850 -19.67459 -16.75568 -16.22411 -15.50828 -14.82351 -14.33443 -14.22485 -13.88855 -13.50920 -13.14431 -12.80225 -12.54709 -12.36861 -12.00667 -11.82068 -11.46486 -11.28240 -11.05136 -10.95456 -10.84955 -10.60729 -10.10288 -9.75624 -9.63482 -9.18461 -8.50158 -8.42554 -7.84483 -6.01326 -3.99369 3.36406 3.42820 3.48349 4.06571 4.49783 4.56203 4.60073 4.67211 5.08308 5.22380 5.31196 5.33630 5.42887 5.44344 5.50162 5.55789 5.70507 5.78309 5.81083 5.89069 6.02922 6.11839 6.24574 6.25961 6.35200 6.80633 6.86583 7.05042 7.21915 7.44068 7.68901 7.82083 7.97312 8.56678 9.02857 9.61442 11.12083 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.043407 B = 0.006124 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.901964 B = 4570.795930 C = 4717.695903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 H 0.087 0.913 4 C 0.039 3.961 5 N -0.506 5.506 6 C 0.014 3.986 7 C 0.043 3.957 8 C 0.086 3.914 9 H 0.050 0.950 10 N -0.679 5.679 11 C 0.073 3.927 12 C -0.010 4.010 13 C -0.521 4.521 14 H 0.070 0.930 15 C 0.067 3.933 16 N -0.905 5.905 17 Si 0.883 3.117 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.265 1.265 21 H 0.053 0.947 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.077 0.923 25 H 0.040 0.960 26 H 0.023 0.977 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.037 0.963 30 H 0.091 0.909 31 H 0.336 0.664 32 H 0.020 0.980 33 H 0.062 0.938 34 H 0.022 0.978 35 H 0.013 0.987 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.847 -2.432 18.283 19.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 H 0.105 0.895 4 C -0.089 4.089 5 N -0.229 5.229 6 C -0.135 4.135 7 C -0.085 4.085 8 C -0.025 4.025 9 H 0.068 0.932 10 N -0.311 5.311 11 C -0.055 4.055 12 C -0.047 4.047 13 C -0.559 4.559 14 H 0.088 0.912 15 C -0.134 4.134 16 N -0.544 5.544 17 Si 0.710 3.290 18 H -0.202 1.202 19 H -0.216 1.216 20 H -0.190 1.190 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.096 0.904 25 H 0.059 0.941 26 H 0.042 0.958 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.109 0.891 31 H 0.154 0.846 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.031 0.969 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.711 -2.393 18.272 19.293 hybrid contribution -0.993 0.398 -0.168 1.083 sum -6.705 -1.995 18.104 19.409 Atomic orbital electron populations 1.21867 0.94713 1.01695 1.01936 1.22141 0.95049 1.00453 0.94379 0.89515 1.23146 0.91299 0.97257 0.97224 1.65354 1.32800 1.22518 1.02253 1.22510 1.00487 0.92709 0.97813 1.23212 0.99794 0.95179 0.90341 1.22296 0.93009 0.93735 0.93416 0.93247 1.60624 1.53815 1.05308 1.11333 1.22005 0.98321 1.00121 0.85049 1.19539 0.95321 0.94698 0.95184 1.21087 1.28964 1.14295 0.91557 0.91177 1.25009 0.96285 0.97390 0.94757 1.69922 1.41417 1.40766 1.02323 0.86727 0.80869 0.83162 0.78210 1.20228 1.21557 1.18962 0.92804 0.92484 0.92302 0.90448 0.94145 0.95828 0.91213 0.91618 0.94445 0.89051 0.84572 0.96168 0.91902 0.96011 0.96911 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.92 37.16 0.33 -1.09 16 2 C -0.10 -1.20 3.33 -89.24 -0.30 -1.49 16 3 H 0.09 1.07 7.52 -51.93 -0.39 0.68 16 4 C 0.04 0.44 6.04 -2.19 -0.01 0.43 16 5 N -0.51 -6.73 5.66 -238.23 -1.35 -8.08 16 6 C 0.01 0.15 9.53 60.06 0.57 0.72 16 7 C 0.04 0.61 6.19 -2.18 -0.01 0.60 16 8 C 0.09 1.25 3.04 -66.33 -0.20 1.05 16 9 H 0.05 0.72 7.38 -51.93 -0.38 0.34 16 10 N -0.68 -11.80 6.29 -105.26 -0.66 -12.46 16 11 C 0.07 1.51 5.48 -3.82 -0.02 1.49 16 12 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 13 C -0.52 -15.15 9.66 -34.44 -0.33 -15.48 16 14 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 16 N -0.91 -28.35 13.96 55.43 0.77 -27.58 16 17 Si 0.88 22.30 27.47 -169.99 -4.67 17.63 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 20 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 21 H 0.05 0.51 8.10 -51.93 -0.42 0.09 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.04 0.42 7.66 -51.93 -0.40 0.02 16 26 H 0.02 0.23 7.97 -51.93 -0.41 -0.18 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.04 0.48 7.90 -51.93 -0.41 0.07 16 30 H 0.09 1.48 8.02 -51.93 -0.42 1.06 16 31 H 0.34 5.54 8.05 -39.29 -0.32 5.23 16 32 H 0.02 0.41 8.07 -51.93 -0.42 0.00 16 33 H 0.06 1.32 8.11 -51.93 -0.42 0.90 16 34 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 35 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 36 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 286.65 15.07 4.32 4.32 Total: -1.00 -31.04 286.65 -8.24 -39.28 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -6.46 Total: -0.85 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -0.19 Total: -12.26 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -1.24 Total: -48.12 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.63 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.04 -8.24 -39.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308254537.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.244 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds