Wall clock time and date at job start Mon Mar 30 2020 02:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 110.37054 * 2 1 4 4 C 1.54379 * 110.32562 * 122.18007 * 2 1 3 5 5 N 1.48562 * 104.59548 * 142.74469 * 4 2 1 6 6 C 1.46899 * 111.00322 * 200.96142 * 5 4 2 7 7 C 1.48556 * 104.22129 * 320.52287 * 5 4 2 8 8 C 1.54265 * 110.32023 * 237.81841 * 2 1 3 9 9 H 1.09000 * 110.40743 * 122.16407 * 8 2 1 10 10 N 1.46892 * 110.32382 * 359.97438 * 8 2 1 11 11 C 1.46899 * 110.99999 * 167.37746 * 10 8 2 12 12 C 1.52997 * 109.47429 * 179.97438 * 11 10 8 13 13 C 1.50698 * 109.47331 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00113 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00066 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99984 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00032 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.47208 * 90.00210 * 17 15 13 19 19 H 1.48498 * 109.47103 * 210.00554 * 17 15 13 20 20 H 1.48503 * 109.46718 * 330.00276 * 17 15 13 21 21 H 1.08997 * 109.47433 * 176.05291 * 1 2 3 22 22 H 1.09004 * 109.46844 * 296.05194 * 1 2 3 23 23 H 1.08994 * 109.47291 * 56.04858 * 1 2 3 24 24 H 1.09002 * 110.40979 * 23.96936 * 4 2 1 25 25 H 1.08995 * 110.41704 * 261.52542 * 4 2 1 26 26 H 1.08996 * 109.47036 * 175.41935 * 6 5 4 27 27 H 1.09002 * 109.46670 * 295.41755 * 6 5 4 28 28 H 1.08998 * 109.47148 * 55.42212 * 6 5 4 29 29 H 1.09006 * 110.40825 * 280.69883 * 7 5 4 30 30 H 1.09005 * 110.41423 * 158.26404 * 7 5 4 31 31 H 1.00903 * 111.00212 * 43.43053 * 10 8 2 32 32 H 1.09008 * 109.46826 * 60.00191 * 11 10 8 33 33 H 1.09002 * 109.47375 * 300.00250 * 11 10 8 34 34 H 1.09002 * 109.47200 * 300.00546 * 12 11 10 35 35 H 1.09008 * 109.46807 * 60.00368 * 12 11 10 36 36 H 0.96997 * 120.00076 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0662 -0.7710 1.2253 5 7 3.2693 -1.4829 0.7225 6 6 3.6068 -2.6217 1.5868 7 6 2.8806 -1.9421 -0.6358 8 6 2.0657 -0.7705 -1.2244 9 1 2.7077 -0.1278 -1.8268 10 7 0.9511 -1.2806 -2.0339 11 6 1.4232 -1.7505 -3.3432 12 6 0.2370 -2.2736 -4.1555 13 6 0.7214 -2.7562 -5.4984 14 1 1.7705 -2.6962 -5.7474 15 6 -0.1748 -3.2744 -6.4091 16 7 0.2481 -3.6960 -7.5809 17 14 -1.9894 -3.3789 -5.9781 18 1 -2.6702 -2.1269 -6.3953 19 1 -2.6002 -4.5336 -6.6844 20 1 -2.1402 -3.5594 -4.5118 21 1 -0.3634 -1.0252 -0.0707 22 1 -0.3633 0.4514 0.9233 23 1 -0.3633 0.5739 -0.8524 24 1 1.3229 -1.4848 1.5804 25 1 2.3395 -0.0779 2.0209 26 1 4.4407 -3.1730 1.1523 27 1 3.8878 -2.2572 2.5748 28 1 2.7425 -3.2800 1.6745 29 1 2.2647 -2.8393 -0.5719 30 1 3.7670 -2.1309 -1.2415 31 1 0.2309 -0.5818 -2.1388 32 1 2.1481 -2.5522 -3.2017 33 1 1.8940 -0.9251 -3.8773 34 1 -0.2335 -3.0991 -3.6212 35 1 -0.4882 -1.4721 -4.2969 36 1 -0.3823 -4.0609 -8.2215 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308254539.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:12 Heat of formation + Delta-G solvation = 1.434062 kcal Electronic energy + Delta-G solvation = -14435.077347 eV Core-core repulsion = 12146.826607 eV Total energy + Delta-G solvation = -2288.250740 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.40036 -35.57022 -33.37764 -32.21971 -29.95799 -28.22994 -26.57300 -24.50934 -23.41094 -21.22891 -20.24156 -19.22413 -16.77186 -16.18775 -15.59840 -15.00104 -14.53687 -14.19568 -14.12606 -13.33583 -13.19026 -12.64938 -12.41096 -12.29244 -12.04365 -11.72936 -11.42251 -11.23306 -11.13867 -10.94035 -10.67725 -10.56364 -10.03251 -9.84320 -9.68203 -9.21980 -8.53416 -8.52340 -7.94112 -6.03922 -4.02207 3.31911 3.39430 3.45130 3.98855 4.46494 4.61618 4.67017 4.76084 5.04820 5.26126 5.30626 5.38974 5.48474 5.54549 5.57682 5.64198 5.77847 5.81978 5.88960 6.04173 6.11215 6.13190 6.20351 6.35924 6.39819 6.75849 6.78706 6.97976 7.17055 7.38094 7.63534 7.77004 7.91440 8.54020 9.00447 9.58494 11.09488 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044871 B = 0.006412 C = 0.006008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.860698 B = 4365.429001 C = 4659.006104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 H 0.075 0.925 4 C 0.040 3.960 5 N -0.520 5.520 6 C 0.015 3.985 7 C 0.042 3.958 8 C 0.084 3.916 9 H 0.047 0.953 10 N -0.688 5.688 11 C 0.071 3.929 12 C -0.009 4.009 13 C -0.521 4.521 14 H 0.071 0.929 15 C 0.067 3.933 16 N -0.904 5.904 17 Si 0.881 3.119 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.264 1.264 21 H 0.073 0.927 22 H 0.049 0.951 23 H 0.056 0.944 24 H 0.047 0.953 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.029 0.971 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.339 0.661 32 H 0.063 0.937 33 H 0.022 0.978 34 H 0.024 0.976 35 H 0.008 0.992 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.118 5.948 17.549 18.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 H 0.093 0.907 4 C -0.088 4.088 5 N -0.244 5.244 6 C -0.134 4.134 7 C -0.087 4.087 8 C -0.027 4.027 9 H 0.065 0.935 10 N -0.322 5.322 11 C -0.057 4.057 12 C -0.047 4.047 13 C -0.559 4.559 14 H 0.089 0.911 15 C -0.134 4.134 16 N -0.543 5.543 17 Si 0.709 3.291 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.188 1.188 21 H 0.092 0.908 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.065 0.935 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.160 0.840 32 H 0.082 0.918 33 H 0.040 0.960 34 H 0.042 0.958 35 H 0.026 0.974 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.561 5.572 17.655 18.690 hybrid contribution -1.384 0.138 -0.402 1.448 sum 1.178 5.711 17.253 18.212 Atomic orbital electron populations 1.21745 0.94218 1.03215 1.00855 1.21982 0.96266 0.98980 0.94199 0.90659 1.23154 0.91207 0.97332 0.97137 1.65347 1.33215 1.23005 1.02796 1.22480 1.00537 0.92794 0.97588 1.23165 0.98573 0.97423 0.89502 1.22168 0.92405 0.94290 0.93817 0.93471 1.60863 1.11374 1.42154 1.17823 1.21992 0.99094 0.98146 0.86439 1.19540 0.93766 0.96116 0.95274 1.21080 0.96400 1.40843 0.97623 0.91117 1.25010 0.98913 0.94739 0.94761 1.69917 1.35027 1.42489 1.06886 0.86750 0.85508 0.77678 0.79205 1.20392 1.21439 1.18810 0.90833 0.93148 0.92528 0.93505 0.90635 0.91351 0.91574 0.95275 0.92273 0.90486 0.84040 0.91802 0.95983 0.95757 0.97382 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 7.84 37.16 0.29 -1.31 16 2 C -0.09 -1.14 3.65 -89.24 -0.33 -1.47 16 3 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 4 C 0.04 0.46 6.04 -2.18 -0.01 0.45 16 5 N -0.52 -6.64 5.66 -238.23 -1.35 -7.99 16 6 C 0.01 0.16 9.53 60.06 0.57 0.73 16 7 C 0.04 0.60 5.64 -2.19 -0.01 0.59 16 8 C 0.08 1.23 3.34 -66.33 -0.22 1.00 16 9 H 0.05 0.72 8.02 -51.93 -0.42 0.30 16 10 N -0.69 -11.51 5.25 -105.27 -0.55 -12.07 16 11 C 0.07 1.45 5.46 -3.83 -0.02 1.43 16 12 C -0.01 -0.22 4.30 -27.89 -0.12 -0.34 16 13 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 14 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -28.16 13.96 55.43 0.77 -27.39 16 17 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 21 H 0.07 0.94 7.55 -51.93 -0.39 0.55 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.63 7.06 -51.93 -0.37 0.26 16 24 H 0.05 0.54 7.62 -51.93 -0.40 0.15 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.31 7.97 -51.93 -0.41 -0.10 16 29 H 0.06 0.92 7.88 -51.93 -0.41 0.52 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.34 5.36 6.37 -39.29 -0.25 5.11 16 32 H 0.06 1.33 7.74 -51.92 -0.40 0.93 16 33 H 0.02 0.45 8.11 -51.93 -0.42 0.03 16 34 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 35 H 0.01 0.19 7.57 -51.92 -0.39 -0.20 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 282.28 15.07 4.25 4.25 Total: -1.00 -30.38 282.28 -8.18 -38.56 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.36 Total: -0.26 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -0.28 Total: -12.42 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -1.13 Total: -47.44 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.38 -8.18 -38.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308254539.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.993 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds