Wall clock time and date at job start Mon Mar 30 2020 02:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.06604 * 2 1 4 4 C 1.53994 * 109.91913 * 238.78990 * 2 1 3 5 5 C 1.54599 * 105.14255 * 239.42561 * 4 2 1 6 6 H 1.08998 * 110.72213 * 96.39702 * 5 4 2 7 7 N 1.46893 * 110.72117 * 219.68603 * 5 4 2 8 8 C 1.46909 * 110.99941 * 199.95469 * 7 5 4 9 9 C 1.52992 * 109.47278 * 180.02562 * 8 7 5 10 10 C 1.50701 * 109.47056 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99907 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00098 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99579 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00096 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47424 * 89.99871 * 14 12 10 16 16 H 1.48506 * 109.46872 * 210.00161 * 14 12 10 17 17 H 1.48501 * 109.46957 * 329.99819 * 14 12 10 18 18 C 1.54935 * 102.91751 * 338.04313 * 5 4 2 19 19 N 1.47904 * 109.91575 * 121.20501 * 2 1 3 20 20 C 1.46906 * 110.99826 * 265.19810 * 19 2 1 21 21 H 1.08992 * 109.47138 * 300.25371 * 1 2 3 22 22 H 1.09008 * 109.46490 * 60.25368 * 1 2 3 23 23 H 1.09000 * 109.47273 * 180.24762 * 1 2 3 24 24 H 1.09001 * 110.30988 * 120.50902 * 4 2 1 25 25 H 1.09004 * 110.31062 * 358.34171 * 4 2 1 26 26 H 1.00897 * 111.00377 * 323.90384 * 7 5 4 27 27 H 1.09008 * 109.46728 * 300.00054 * 8 7 5 28 28 H 1.09002 * 109.46511 * 59.99939 * 8 7 5 29 29 H 1.09001 * 109.47070 * 300.00018 * 9 8 7 30 30 H 1.09002 * 109.47336 * 59.99635 * 9 8 7 31 31 H 0.97000 * 119.99382 * 180.02562 * 13 12 10 32 32 H 1.09003 * 110.66713 * 278.97638 * 18 5 4 33 33 H 1.09005 * 110.80636 * 155.91815 * 18 5 4 34 34 H 1.08996 * 109.46819 * 302.47678 * 20 19 2 35 35 H 1.09003 * 109.47171 * 62.47542 * 20 19 2 36 36 H 1.08997 * 109.46969 * 182.47531 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0547 -0.7502 -1.2383 5 6 2.9059 -1.9118 -0.6761 6 1 2.3213 -2.8306 -0.6287 7 7 4.1179 -2.1060 -1.4830 8 6 4.6782 -3.4483 -1.2769 9 6 5.9367 -3.6123 -2.1313 10 6 6.5118 -4.9891 -1.9193 11 1 6.0278 -5.6782 -1.2432 12 6 7.6552 -5.3692 -2.5894 13 7 8.2437 -4.5304 -3.4139 14 14 8.3677 -7.0760 -2.3272 15 1 7.7761 -8.0161 -3.3127 16 1 9.8409 -7.0307 -2.5089 17 1 8.0526 -7.5379 -0.9515 18 6 3.2680 -1.4185 0.7473 19 7 2.0338 -0.7205 1.1894 20 6 2.3211 0.2123 2.2874 21 1 -0.3633 0.5177 0.8876 22 1 -0.3632 0.5099 -0.8923 23 1 -0.3634 -1.0276 0.0044 24 1 2.6715 -0.0897 -1.8476 25 1 1.2229 -1.1402 -1.8249 26 1 3.9324 -1.9379 -2.4604 27 1 4.9341 -3.5776 -0.2252 28 1 3.9416 -4.1978 -1.5665 29 1 5.6813 -3.4828 -3.1830 30 1 6.6730 -2.8628 -1.8413 31 1 9.0480 -4.7981 -3.8856 32 1 4.1097 -0.7268 0.7122 33 1 3.4903 -2.2598 1.4038 34 1 3.0444 0.9558 1.9526 35 1 1.4006 0.7116 2.5902 36 1 2.7313 -0.3383 3.1339 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308264762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:01 Heat of formation + Delta-G solvation = -29.247381 kcal Electronic energy + Delta-G solvation = -14168.960570 eV Core-core repulsion = 11879.379383 eV Total energy + Delta-G solvation = -2289.581187 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.33281 -37.07124 -35.00832 -32.95104 -32.10795 -29.62485 -27.11197 -26.15560 -24.97114 -22.50642 -21.60132 -20.98943 -18.52630 -17.05600 -16.71790 -16.37965 -16.24010 -15.48529 -14.95451 -14.79158 -14.55286 -14.22202 -13.71993 -13.43875 -13.22946 -13.08510 -12.90545 -12.62613 -12.38527 -12.14166 -12.08688 -11.93168 -11.79502 -11.59944 -11.37355 -11.17059 -10.56845 -9.46211 -9.34031 -8.20880 -6.32426 1.40473 1.42059 1.53330 2.40356 2.89128 3.12706 3.47500 3.66005 3.67629 4.08374 4.27186 4.40033 4.51342 4.52921 4.55099 4.57696 4.60833 4.81596 4.88076 4.91811 4.97606 5.00449 5.03943 5.10126 5.14845 5.42113 5.43963 5.66035 5.75561 5.88213 6.09044 6.15077 6.28238 6.52818 6.84592 7.36991 8.91355 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.063740 B = 0.005128 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.178807 B = 5459.099254 C = 5617.368471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.062 3.938 3 H 0.056 0.944 4 C -0.123 4.123 5 C 0.079 3.921 6 H 0.047 0.953 7 N -0.688 5.688 8 C 0.086 3.914 9 C 0.032 3.968 10 C -0.546 4.546 11 H 0.059 0.941 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.967 3.033 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.264 1.264 18 C 0.050 3.950 19 N -0.528 5.528 20 C 0.017 3.983 21 H 0.059 0.941 22 H 0.071 0.929 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.342 0.658 27 H 0.055 0.945 28 H 0.019 0.981 29 H -0.007 1.007 30 H -0.006 1.006 31 H 0.264 0.736 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.027 0.973 35 H 0.083 0.917 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.365 8.848 7.367 18.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.046 4.046 3 H 0.074 0.926 4 C -0.162 4.162 5 C -0.031 4.031 6 H 0.065 0.935 7 N -0.319 5.319 8 C -0.043 4.043 9 C -0.005 4.005 10 C -0.584 4.584 11 H 0.078 0.922 12 C -0.196 4.196 13 N -0.572 5.572 14 Si 0.791 3.209 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.188 1.188 18 C -0.079 4.079 19 N -0.253 5.253 20 C -0.131 4.131 21 H 0.078 0.922 22 H 0.090 0.910 23 H 0.073 0.927 24 H 0.094 0.906 25 H 0.103 0.897 26 H 0.161 0.839 27 H 0.074 0.926 28 H 0.037 0.963 29 H 0.011 0.989 30 H 0.012 0.988 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.045 0.955 35 H 0.101 0.899 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.208 8.812 7.931 18.504 hybrid contribution 0.819 -0.740 -0.828 1.380 sum -13.389 8.072 7.102 17.171 Atomic orbital electron populations 1.21715 0.92511 1.02182 1.02156 1.22427 0.97246 0.95957 0.89015 0.92576 1.22646 0.99328 0.96504 0.97697 1.22398 0.89503 0.97640 0.93564 0.93455 1.60535 1.29357 1.29245 1.12812 1.21798 0.95591 0.87411 0.99499 1.18920 0.92552 0.95279 0.93796 1.21612 1.10518 1.00268 1.26015 0.92230 1.25970 0.97211 1.01791 0.94663 1.70110 1.20482 1.37519 1.29069 0.85418 0.77376 0.79056 0.79012 1.19647 1.20653 1.18781 1.23094 0.91418 0.98120 0.95234 1.64692 1.26095 1.27096 1.07411 1.22549 1.01289 0.94938 0.94368 0.92190 0.91007 0.92671 0.90575 0.89715 0.83896 0.92633 0.96305 0.98900 0.98756 0.92714 0.93885 0.91241 0.95470 0.89870 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 9.32 71.98 0.67 -1.52 16 2 C 0.06 1.33 3.09 45.06 0.14 1.47 16 3 H 0.06 1.16 7.70 -2.39 -0.02 1.14 16 4 C -0.12 -2.91 6.08 31.47 0.19 -2.72 16 5 C 0.08 2.37 3.35 46.12 0.15 2.53 16 6 H 0.05 1.48 7.90 -2.39 -0.02 1.46 16 7 N -0.69 -24.87 6.31 -485.36 -3.06 -27.94 16 8 C 0.09 3.71 5.48 86.30 0.47 4.19 16 9 C 0.03 1.74 5.23 29.85 0.16 1.89 16 10 C -0.55 -31.64 9.11 25.60 0.23 -31.41 16 11 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 12 C 0.00 0.10 5.46 84.65 0.46 0.56 16 13 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 14 Si 0.97 44.62 29.54 68.60 2.03 46.65 16 15 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 17 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 18 C 0.05 1.45 6.18 86.65 0.54 1.99 16 19 N -0.53 -12.84 5.18 -884.06 -4.58 -17.43 16 20 C 0.02 0.34 9.41 127.69 1.20 1.54 16 21 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 23 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.08 1.81 8.00 -2.39 -0.02 1.79 16 25 H 0.08 1.76 7.69 -2.39 -0.02 1.74 16 26 H 0.34 11.86 8.46 -89.70 -0.76 11.10 16 27 H 0.06 2.42 8.13 -2.38 -0.02 2.40 16 28 H 0.02 0.80 8.09 -2.39 -0.02 0.78 16 29 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 30 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 31 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 32 H 0.04 1.35 8.00 -2.39 -0.02 1.33 16 33 H 0.07 2.10 8.14 -2.38 -0.02 2.09 16 34 H 0.03 0.54 7.99 -2.39 -0.02 0.52 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -63.81 291.49 -0.86 -64.67 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.26 Total: 12.63 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 4.22 Total: -21.48 kcal Atomic # 7 Polarization: -95.10 SS G_CDS: -7.36 Total: -102.46 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -63.81 -0.86 -64.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308264762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.420 kcal (2) G-P(sol) polarization free energy of solvation -63.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds