Wall clock time and date at job start Mon Mar 30 2020 02:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.59371 * 2 1 4 4 C 1.55108 * 110.82615 * 123.01790 * 2 1 3 5 5 C 1.54597 * 102.84064 * 155.85147 * 4 2 1 6 6 H 1.08991 * 110.30876 * 97.11874 * 5 4 2 7 7 N 1.46903 * 110.30346 * 219.18796 * 5 4 2 8 8 C 1.46902 * 110.99710 * 203.61124 * 7 5 4 9 9 C 1.52997 * 109.47411 * 179.97438 * 8 7 5 10 10 C 1.50694 * 109.47460 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00179 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00472 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99350 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 179.97438 * 12 10 9 15 15 H 1.48490 * 109.47339 * 179.97438 * 14 12 10 16 16 H 1.48493 * 109.47239 * 300.00306 * 14 12 10 17 17 H 1.48504 * 109.46636 * 59.99865 * 14 12 10 18 18 C 1.53996 * 105.22882 * 338.14823 * 5 4 2 19 19 N 1.47909 * 107.05709 * 358.73017 * 18 5 4 20 20 C 1.46897 * 110.99766 * 145.84249 * 19 18 5 21 21 H 1.09001 * 109.47484 * 181.55985 * 1 2 3 22 22 H 1.09002 * 109.47273 * 301.55379 * 1 2 3 23 23 H 1.08994 * 109.47233 * 61.55413 * 1 2 3 24 24 H 1.08993 * 110.70611 * 37.54286 * 4 2 1 25 25 H 1.08996 * 110.81256 * 274.20403 * 4 2 1 26 26 H 1.00899 * 111.00150 * 327.55567 * 7 5 4 27 27 H 1.09003 * 109.47595 * 59.99616 * 8 7 5 28 28 H 1.08999 * 109.47491 * 299.99865 * 8 7 5 29 29 H 1.09005 * 109.46800 * 60.00408 * 9 8 7 30 30 H 1.08998 * 109.47382 * 300.00207 * 9 8 7 31 31 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 32 32 H 1.08993 * 109.91483 * 118.07665 * 18 5 4 33 33 H 1.08998 * 109.91811 * 239.17801 * 18 5 4 34 34 H 1.08998 * 109.47142 * 59.87478 * 20 19 18 35 35 H 1.09000 * 109.46742 * 179.87354 * 20 19 18 36 36 H 1.09001 * 109.47154 * 299.86654 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9134 1.0203 0.0000 4 6 2.0815 -0.7900 1.2156 5 6 3.4892 -1.2155 0.7388 6 1 4.2413 -0.5215 1.1135 7 7 3.7882 -2.5818 1.1884 8 6 5.2381 -2.8078 1.2571 9 6 5.5096 -4.2378 1.7285 10 6 6.9969 -4.4699 1.7984 11 1 7.6803 -3.6768 1.5328 12 6 7.4855 -5.6949 2.2005 13 7 6.6533 -6.6607 2.5235 14 14 9.3291 -5.9828 2.2865 15 1 9.5926 -7.3707 2.7442 16 1 9.9246 -5.7833 0.9409 17 1 9.9358 -5.0229 3.2436 18 6 3.4293 -1.1600 -0.7990 19 7 2.0542 -0.7571 -1.1654 20 6 2.0543 0.0743 -2.3765 21 1 -0.3634 -1.0273 0.0280 22 1 -0.3634 0.5378 0.8757 23 1 -0.3633 0.4895 -0.9035 24 1 1.4629 -1.6638 1.4201 25 1 2.1493 -0.1497 2.0951 26 1 3.3498 -2.7743 2.0765 27 1 5.6828 -2.1033 1.9601 28 1 5.6760 -2.6611 0.2698 29 1 5.0650 -4.9425 1.0258 30 1 5.0719 -4.3842 2.7159 31 1 6.9970 -7.5227 2.8061 32 1 4.1432 -0.4257 -1.1720 33 1 3.6551 -2.1418 -1.2150 34 1 2.4877 -0.4883 -3.2033 35 1 1.0307 0.3546 -2.6247 36 1 2.6446 0.9735 -2.1998 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308264764.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:07 Heat of formation + Delta-G solvation = -6.497106 kcal Electronic energy + Delta-G solvation = -14177.105797 eV Core-core repulsion = 11888.511136 eV Total energy + Delta-G solvation = -2288.594661 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.22764 -35.50740 -33.00250 -31.80572 -30.64176 -28.01467 -26.00831 -24.68099 -23.58849 -20.81392 -20.23354 -19.73929 -16.40880 -16.20592 -15.43815 -14.63060 -14.45193 -14.12243 -14.08975 -13.63057 -12.91225 -12.60750 -12.35445 -12.10986 -12.00613 -11.58030 -11.32335 -11.14987 -10.93296 -10.90723 -10.84083 -10.61681 -10.47583 -9.96897 -9.32997 -9.12978 -8.37270 -8.32710 -7.79994 -5.97485 -4.00162 3.34735 3.39083 3.41405 4.00869 4.44175 4.62323 4.71437 4.78851 5.14380 5.28100 5.34862 5.38268 5.38767 5.50394 5.54150 5.71690 5.76409 5.82897 5.84182 6.00250 6.12118 6.20459 6.30165 6.37058 6.49200 6.95053 7.01828 7.10605 7.53692 7.75526 7.86075 7.99503 8.11571 8.45930 9.06923 9.63403 11.13922 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.064750 B = 0.005159 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.328120 B = 5425.781702 C = 5617.593399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.060 3.940 3 H 0.048 0.952 4 C -0.122 4.122 5 C 0.076 3.924 6 H 0.043 0.957 7 N -0.679 5.679 8 C 0.065 3.935 9 C 0.026 3.974 10 C -0.523 4.523 11 H 0.053 0.947 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.893 3.107 15 H -0.287 1.287 16 H -0.277 1.277 17 H -0.278 1.278 18 C 0.046 3.954 19 N -0.513 5.513 20 C 0.016 3.984 21 H 0.065 0.935 22 H 0.056 0.944 23 H 0.051 0.949 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.338 0.662 27 H 0.014 0.986 28 H 0.057 0.943 29 H 0.026 0.974 30 H 0.013 0.987 31 H 0.261 0.739 32 H 0.036 0.964 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.952 13.866 -4.916 17.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.048 4.048 3 H 0.066 0.934 4 C -0.160 4.160 5 C -0.035 4.035 6 H 0.061 0.939 7 N -0.311 5.311 8 C -0.063 4.063 9 C -0.012 4.012 10 C -0.561 4.561 11 H 0.071 0.929 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.721 3.279 15 H -0.213 1.213 16 H -0.202 1.202 17 H -0.203 1.203 18 C -0.082 4.082 19 N -0.238 5.238 20 C -0.132 4.132 21 H 0.084 0.916 22 H 0.075 0.925 23 H 0.070 0.930 24 H 0.105 0.895 25 H 0.086 0.914 26 H 0.156 0.844 27 H 0.032 0.968 28 H 0.076 0.924 29 H 0.044 0.956 30 H 0.032 0.968 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -10.330 12.952 -5.610 17.491 hybrid contribution 1.877 1.049 0.941 2.347 sum -8.453 14.001 -4.669 17.008 Atomic orbital electron populations 1.21661 0.93906 1.02615 1.00991 1.22759 0.95924 0.95293 0.90865 0.93429 1.22788 0.96241 1.00364 0.96597 1.22319 0.95525 0.90905 0.94800 0.93869 1.60683 1.13106 1.22204 1.35070 1.22215 0.84663 1.00100 0.99337 1.19060 0.96135 0.89555 0.96441 1.21141 0.92032 0.97780 1.45187 0.92879 1.24997 0.97769 0.96136 0.95402 1.69967 1.34188 1.03639 1.45434 0.86650 0.85710 0.77149 0.78429 1.21252 1.20230 1.20330 1.22971 0.88132 1.01622 0.95475 1.64709 1.19620 1.36778 1.02677 1.22511 1.01428 0.95534 0.93765 0.91587 0.92506 0.92983 0.89544 0.91422 0.84380 0.96785 0.92438 0.95587 0.96822 0.92939 0.94538 0.88758 0.91353 0.91561 0.95856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 9.49 37.16 0.35 -0.98 16 2 C 0.06 0.70 2.91 -65.70 -0.19 0.51 16 3 H 0.05 0.53 7.96 -51.93 -0.41 0.12 16 4 C -0.12 -1.54 5.97 -24.78 -0.15 -1.68 16 5 C 0.08 1.15 3.31 -66.35 -0.22 0.93 16 6 H 0.04 0.66 7.84 -51.93 -0.41 0.26 16 7 N -0.68 -12.42 6.18 -105.29 -0.65 -13.08 16 8 C 0.07 1.40 5.46 -3.82 -0.02 1.37 16 9 C 0.03 0.68 5.23 -27.89 -0.15 0.53 16 10 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 11 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -27.21 13.29 55.43 0.74 -26.48 16 14 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 C 0.05 0.69 6.46 -2.75 -0.02 0.67 16 19 N -0.51 -6.85 5.25 -230.73 -1.21 -8.06 16 20 C 0.02 0.18 9.30 60.06 0.56 0.74 16 21 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.47 7.49 -51.93 -0.39 0.09 16 24 H 0.09 1.15 7.89 -51.93 -0.41 0.74 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.34 5.94 8.36 -39.29 -0.33 5.62 16 27 H 0.01 0.30 8.07 -51.93 -0.42 -0.12 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.04 0.51 7.73 -51.93 -0.40 0.11 16 33 H 0.09 1.61 7.93 -51.93 -0.41 1.20 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.63 7.47 -51.93 -0.39 0.24 16 36 H 0.02 0.24 8.00 -51.93 -0.42 -0.18 16 LS Contribution 290.06 15.07 4.37 4.37 Total: -1.00 -30.23 290.06 -8.50 -38.73 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -6.48 Total: -0.68 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -0.24 Total: -11.65 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -1.13 Total: -47.62 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.23 -8.50 -38.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308264764.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.237 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds