Wall clock time and date at job start Mon Mar 30 2020 02:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.59371 * 2 1 4 4 C 1.55108 * 110.82615 * 123.01790 * 2 1 3 5 5 C 1.54597 * 102.84064 * 155.85147 * 4 2 1 6 6 H 1.08991 * 110.30876 * 97.11874 * 5 4 2 7 7 N 1.46903 * 110.30346 * 219.18796 * 5 4 2 8 8 C 1.46902 * 110.99710 * 203.61124 * 7 5 4 9 9 C 1.52997 * 109.47411 * 179.97438 * 8 7 5 10 10 C 1.50694 * 109.47460 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00179 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00472 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99350 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 179.97438 * 12 10 9 15 15 H 1.48490 * 109.47339 * 179.97438 * 14 12 10 16 16 H 1.48493 * 109.47239 * 300.00306 * 14 12 10 17 17 H 1.48504 * 109.46636 * 59.99865 * 14 12 10 18 18 C 1.53996 * 105.22882 * 338.14823 * 5 4 2 19 19 N 1.47909 * 107.05709 * 358.73017 * 18 5 4 20 20 C 1.46897 * 110.99766 * 145.84249 * 19 18 5 21 21 H 1.09001 * 109.47484 * 181.55985 * 1 2 3 22 22 H 1.09002 * 109.47273 * 301.55379 * 1 2 3 23 23 H 1.08994 * 109.47233 * 61.55413 * 1 2 3 24 24 H 1.08993 * 110.70611 * 37.54286 * 4 2 1 25 25 H 1.08996 * 110.81256 * 274.20403 * 4 2 1 26 26 H 1.00899 * 111.00150 * 327.55567 * 7 5 4 27 27 H 1.09003 * 109.47595 * 59.99616 * 8 7 5 28 28 H 1.08999 * 109.47491 * 299.99865 * 8 7 5 29 29 H 1.09005 * 109.46800 * 60.00408 * 9 8 7 30 30 H 1.08998 * 109.47382 * 300.00207 * 9 8 7 31 31 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 32 32 H 1.08993 * 109.91483 * 118.07665 * 18 5 4 33 33 H 1.08998 * 109.91811 * 239.17801 * 18 5 4 34 34 H 1.08998 * 109.47142 * 59.87478 * 20 19 18 35 35 H 1.09000 * 109.46742 * 179.87354 * 20 19 18 36 36 H 1.09001 * 109.47154 * 299.86654 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9134 1.0203 0.0000 4 6 2.0815 -0.7900 1.2156 5 6 3.4892 -1.2155 0.7388 6 1 4.2413 -0.5215 1.1135 7 7 3.7882 -2.5818 1.1884 8 6 5.2381 -2.8078 1.2571 9 6 5.5096 -4.2378 1.7285 10 6 6.9969 -4.4699 1.7984 11 1 7.6803 -3.6768 1.5328 12 6 7.4855 -5.6949 2.2005 13 7 6.6533 -6.6607 2.5235 14 14 9.3291 -5.9828 2.2865 15 1 9.5926 -7.3707 2.7442 16 1 9.9246 -5.7833 0.9409 17 1 9.9358 -5.0229 3.2436 18 6 3.4293 -1.1600 -0.7990 19 7 2.0542 -0.7571 -1.1654 20 6 2.0543 0.0743 -2.3765 21 1 -0.3634 -1.0273 0.0280 22 1 -0.3634 0.5378 0.8757 23 1 -0.3633 0.4895 -0.9035 24 1 1.4629 -1.6638 1.4201 25 1 2.1493 -0.1497 2.0951 26 1 3.3498 -2.7743 2.0765 27 1 5.6828 -2.1033 1.9601 28 1 5.6760 -2.6611 0.2698 29 1 5.0650 -4.9425 1.0258 30 1 5.0719 -4.3842 2.7159 31 1 6.9970 -7.5227 2.8061 32 1 4.1432 -0.4257 -1.1720 33 1 3.6551 -2.1418 -1.2150 34 1 2.4877 -0.4883 -3.2033 35 1 1.0307 0.3546 -2.6247 36 1 2.6446 0.9735 -2.1998 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308264764.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:07 Heat of formation + Delta-G solvation = -28.075475 kcal Electronic energy + Delta-G solvation = -14178.041505 eV Core-core repulsion = 11888.511136 eV Total energy + Delta-G solvation = -2289.530370 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.31092 -37.05654 -35.00892 -32.86626 -32.14238 -29.65172 -27.03239 -26.19261 -25.05748 -22.55399 -21.47584 -20.86304 -18.49483 -17.43598 -16.78566 -16.36993 -15.73098 -15.60667 -15.28767 -14.74672 -14.38679 -14.19771 -13.64578 -13.27003 -13.15635 -12.96929 -12.83076 -12.78964 -12.38279 -12.20307 -12.07489 -11.95609 -11.83881 -11.64698 -11.38034 -11.16088 -10.56202 -9.39190 -9.27409 -8.20148 -6.32102 1.40287 1.43765 1.51797 2.40667 3.03768 3.13135 3.29007 3.63536 3.74394 4.20343 4.22382 4.36511 4.47787 4.50195 4.55144 4.56845 4.63363 4.74537 4.82809 4.96585 4.98503 5.02246 5.04830 5.12877 5.19119 5.41983 5.44653 5.66491 5.78563 5.94960 6.14559 6.16964 6.30722 6.55246 6.84912 7.37215 8.91906 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.064750 B = 0.005159 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.328120 B = 5425.781702 C = 5617.593399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.062 3.938 3 H 0.059 0.941 4 C -0.116 4.116 5 C 0.072 3.928 6 H 0.047 0.953 7 N -0.686 5.686 8 C 0.085 3.915 9 C 0.032 3.968 10 C -0.547 4.547 11 H 0.060 0.940 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.968 3.032 15 H -0.282 1.282 16 H -0.267 1.267 17 H -0.266 1.266 18 C 0.050 3.950 19 N -0.530 5.530 20 C 0.016 3.984 21 H 0.053 0.947 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.341 0.659 27 H 0.019 0.981 28 H 0.054 0.946 29 H -0.007 1.007 30 H -0.008 1.008 31 H 0.264 0.736 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.721 15.544 -5.044 19.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.046 4.046 3 H 0.077 0.923 4 C -0.154 4.154 5 C -0.038 4.038 6 H 0.065 0.935 7 N -0.318 5.318 8 C -0.043 4.043 9 C -0.005 4.005 10 C -0.585 4.585 11 H 0.078 0.922 12 C -0.197 4.197 13 N -0.572 5.572 14 Si 0.792 3.208 15 H -0.207 1.207 16 H -0.192 1.192 17 H -0.191 1.191 18 C -0.079 4.079 19 N -0.255 5.255 20 C -0.132 4.132 21 H 0.072 0.928 22 H 0.093 0.907 23 H 0.080 0.920 24 H 0.096 0.904 25 H 0.106 0.894 26 H 0.160 0.840 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.011 0.989 30 H 0.011 0.989 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -10.116 14.654 -5.746 18.711 hybrid contribution 1.734 0.533 0.960 2.053 sum -8.382 15.187 -4.786 17.995 Atomic orbital electron populations 1.21635 0.92422 1.02254 1.02382 1.22838 0.97031 0.95320 0.89453 0.92255 1.22782 0.94189 1.00551 0.97925 1.22422 0.97304 0.88944 0.95152 0.93498 1.60587 1.10946 1.24887 1.35372 1.21807 0.86856 0.96825 0.98848 1.18910 0.95127 0.92031 0.94456 1.21582 0.93207 0.98374 1.45376 0.92192 1.25983 1.03267 0.95744 0.94674 1.70108 1.36705 1.04196 1.46145 0.85464 0.79054 0.77320 0.78977 1.20720 1.19200 1.19068 1.22826 0.89620 1.00451 0.95021 1.64685 1.18407 1.38351 1.04103 1.22558 1.02605 0.95410 0.92634 0.92834 0.90719 0.91996 0.90419 0.89441 0.84036 0.96292 0.92722 0.98901 0.98944 0.92707 0.93710 0.91672 0.91576 0.89992 0.95001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 9.49 71.98 0.68 -1.55 16 2 C 0.06 1.30 2.91 45.32 0.13 1.43 16 3 H 0.06 1.14 7.96 -2.39 -0.02 1.12 16 4 C -0.12 -2.73 5.97 31.86 0.19 -2.54 16 5 C 0.07 2.13 3.31 45.79 0.15 2.29 16 6 H 0.05 1.37 7.84 -2.39 -0.02 1.35 16 7 N -0.69 -25.30 6.18 -487.03 -3.01 -28.31 16 8 C 0.09 3.71 5.46 86.30 0.47 4.18 16 9 C 0.03 1.76 5.23 29.85 0.16 1.92 16 10 C -0.55 -31.83 9.11 25.60 0.23 -31.60 16 11 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 12 C 0.00 0.08 5.46 84.66 0.46 0.54 16 13 N -0.93 -57.74 13.29 21.45 0.28 -57.46 16 14 Si 0.97 44.70 29.54 68.60 2.03 46.73 16 15 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 C 0.05 1.45 6.46 86.45 0.56 2.00 16 19 N -0.53 -13.41 5.25 -883.90 -4.64 -18.05 16 20 C 0.02 0.32 9.30 127.69 1.19 1.51 16 21 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.06 0.95 7.49 -2.39 -0.02 0.93 16 24 H 0.08 1.98 7.89 -2.39 -0.02 1.96 16 25 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.34 12.11 8.36 -89.69 -0.75 11.36 16 27 H 0.02 0.80 8.07 -2.39 -0.02 0.78 16 28 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 29 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 30 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 31 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 32 H 0.04 1.21 7.73 -2.39 -0.02 1.19 16 33 H 0.06 2.27 7.93 -2.39 -0.02 2.25 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.08 1.36 7.47 -2.39 -0.02 1.34 16 36 H 0.03 0.58 8.00 -2.39 -0.02 0.56 16 Total: -1.00 -65.02 290.06 -0.84 -65.86 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.27 Total: 13.04 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: 4.23 Total: -21.81 kcal Atomic # 7 Polarization: -96.45 SS G_CDS: -7.36 Total: -103.82 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -65.02 -0.84 -65.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308264764.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.785 kcal (2) G-P(sol) polarization free energy of solvation -65.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds