Wall clock time and date at job start Mon Mar 30 2020 03:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46986 * 2 1 4 4 N 1.46898 * 109.47103 * 120.00116 * 2 1 3 5 5 C 1.53001 * 109.47038 * 239.99929 * 2 1 3 6 6 H 1.09001 * 109.47274 * 298.48386 * 5 2 1 7 7 C 1.52992 * 109.47202 * 178.48101 * 5 2 1 8 8 N 1.46906 * 109.46838 * 58.48238 * 5 2 1 9 9 C 1.46890 * 111.00339 * 69.19859 * 8 5 2 10 10 C 1.50699 * 109.47304 * 199.24013 * 9 8 5 11 11 H 1.07998 * 120.00274 * 357.48426 * 10 9 8 12 12 C 1.37881 * 119.99940 * 177.20967 * 10 9 8 13 13 N 1.31514 * 119.99794 * 180.27619 * 12 10 9 14 14 Si 1.86797 * 120.00103 * 0.27218 * 12 10 9 15 15 H 1.48497 * 109.47206 * 89.99954 * 14 12 10 16 16 H 1.48503 * 109.47266 * 210.00258 * 14 12 10 17 17 H 1.48506 * 109.47213 * 330.00292 * 14 12 10 18 18 C 1.46901 * 110.99590 * 193.15703 * 8 5 2 19 19 C 1.52999 * 117.49931 * 134.40623 * 18 8 5 20 20 C 1.52991 * 59.99998 * 252.50677 * 19 18 8 21 21 H 1.08996 * 109.46967 * 183.88127 * 1 2 3 22 22 H 1.09007 * 109.46786 * 303.88249 * 1 2 3 23 23 H 1.09004 * 109.47461 * 63.87623 * 1 2 3 24 24 H 1.00896 * 110.99650 * 296.04417 * 4 2 1 25 25 H 1.00899 * 110.99855 * 59.99588 * 4 2 1 26 26 H 1.09001 * 109.47297 * 59.99928 * 7 5 2 27 27 H 1.09004 * 109.47089 * 180.02562 * 7 5 2 28 28 H 1.09010 * 109.47084 * 300.00072 * 7 5 2 29 29 H 1.09007 * 109.47097 * 79.24146 * 9 8 5 30 30 H 1.09003 * 109.47192 * 319.24650 * 9 8 5 31 31 H 0.97005 * 119.99836 * 179.97438 * 13 12 10 32 32 H 1.09003 * 115.54865 * 280.11132 * 18 8 5 33 33 H 1.08997 * 117.50209 * 359.97438 * 19 18 8 34 34 H 1.09008 * 117.49796 * 145.01346 * 19 18 8 35 35 H 1.09005 * 117.50000 * 252.50882 * 20 19 18 36 36 H 1.08999 * 117.50221 * 107.48873 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0400 -0.7213 -1.2492 6 1 1.6990 -1.7565 -1.2358 7 6 3.5694 -0.6883 -1.2685 8 7 1.5205 -0.0502 -2.4484 9 6 2.1317 1.2749 -2.6166 10 6 1.2753 2.1105 -3.5328 11 1 0.3894 1.6852 -3.9808 12 6 1.6195 3.4197 -3.7945 13 7 0.8691 4.1505 -4.5897 14 14 3.1517 4.1554 -3.0195 15 1 4.3154 3.9312 -3.9142 16 1 2.9542 5.6137 -2.8202 17 1 3.4035 3.5062 -1.7078 18 6 1.7226 -0.8789 -3.6445 19 6 0.5456 -1.0227 -4.6113 20 6 0.9565 -2.2007 -3.7258 21 1 -0.3633 -1.0253 0.0696 22 1 -0.3633 0.5730 0.8532 23 1 -0.3634 0.4525 -0.9227 24 1 1.7503 -0.1989 2.0371 25 1 1.6961 -1.6479 1.2227 26 1 3.9549 -1.1861 -0.3788 27 1 3.9327 -1.2017 -2.1588 28 1 3.9104 0.3470 -1.2821 29 1 3.1260 1.1642 -3.0494 30 1 2.2105 1.7645 -1.6459 31 1 1.1112 5.0717 -4.7736 32 1 2.7249 -0.8509 -4.0719 33 1 -0.3788 -0.5029 -4.3598 34 1 0.7734 -1.0892 -5.6752 35 1 1.4547 -3.0424 -4.2071 36 1 0.3026 -2.4556 -2.8918 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379346325.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:07 Heat of formation + Delta-G solvation = 28.605586 kcal Electronic energy + Delta-G solvation = -15140.810054 eV Core-core repulsion = 12853.737559 eV Total energy + Delta-G solvation = -2287.072494 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.66328 -35.90500 -33.47018 -32.21780 -29.32226 -28.27687 -26.66194 -23.24445 -22.18378 -21.64161 -20.33875 -18.44126 -17.02816 -15.80736 -15.43611 -14.82223 -14.08271 -13.87707 -13.43959 -13.28865 -12.77983 -12.68804 -12.26633 -12.01756 -11.81210 -11.32825 -11.16179 -10.91637 -10.83407 -10.64404 -10.52343 -9.97373 -9.76439 -9.71520 -9.35439 -9.12948 -8.52860 -8.45736 -7.30971 -5.99310 -3.94595 3.30716 3.38461 3.40523 4.39620 4.46161 4.50856 5.06912 5.17032 5.33781 5.52007 5.56012 5.61713 5.72047 5.85354 5.91775 5.99537 6.07214 6.20329 6.22501 6.35765 6.42976 6.56401 6.61985 6.67541 6.76578 6.84008 6.87198 7.02883 7.39903 7.62969 7.70207 7.97782 8.13627 8.73657 9.13071 9.63527 11.14089 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.023626 B = 0.012482 C = 0.009941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.856006 B = 2242.736839 C = 2816.002153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.093 3.907 3 H 0.083 0.917 4 N -0.845 5.845 5 C 0.092 3.908 6 H 0.068 0.932 7 C -0.173 4.173 8 N -0.493 5.493 9 C 0.164 3.836 10 C -0.498 4.498 11 H 0.082 0.918 12 C 0.067 3.933 13 N -0.903 5.903 14 Si 0.869 3.131 15 H -0.279 1.279 16 H -0.287 1.287 17 H -0.267 1.267 18 C 0.035 3.965 19 C -0.149 4.149 20 C -0.191 4.191 21 H 0.042 0.958 22 H 0.039 0.961 23 H 0.087 0.913 24 H 0.337 0.663 25 H 0.333 0.667 26 H 0.062 0.938 27 H 0.043 0.957 28 H 0.054 0.946 29 H -0.014 1.014 30 H 0.030 0.970 31 H 0.262 0.738 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.714 -10.611 7.251 12.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.019 4.019 3 H 0.101 0.899 4 N -0.373 5.373 5 C -0.018 4.018 6 H 0.086 0.914 7 C -0.232 4.232 8 N -0.217 5.217 9 C 0.038 3.962 10 C -0.537 4.537 11 H 0.100 0.900 12 C -0.134 4.134 13 N -0.543 5.543 14 Si 0.697 3.303 15 H -0.205 1.205 16 H -0.213 1.213 17 H -0.192 1.192 18 C -0.074 4.074 19 C -0.187 4.187 20 C -0.228 4.228 21 H 0.061 0.939 22 H 0.059 0.941 23 H 0.106 0.894 24 H 0.149 0.851 25 H 0.145 0.855 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.004 0.996 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.118 0.882 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.930 -10.204 6.942 12.492 hybrid contribution 0.699 0.417 0.437 0.924 sum 2.630 -9.787 7.379 12.536 Atomic orbital electron populations 1.22442 0.97099 1.00630 1.03209 1.21427 0.92927 0.98354 0.89159 0.89944 1.58898 1.67597 1.06228 1.04585 1.21525 0.92537 0.97234 0.90459 0.91388 1.22335 0.97750 1.02044 1.01022 1.61912 1.57453 1.02825 0.99461 1.20230 0.93233 0.85758 0.96993 1.21082 1.10934 0.95345 1.26300 0.89957 1.24881 0.96357 0.97044 0.95121 1.69893 1.38546 1.08656 1.37173 0.86960 0.84311 0.78618 0.80452 1.20452 1.21292 1.19198 1.22083 0.94773 0.95436 0.95108 1.22860 1.00361 0.99838 0.95599 1.23004 1.04822 0.91675 1.03333 0.93923 0.94141 0.89443 0.85107 0.85536 0.91911 0.93756 0.92667 0.99590 0.95258 0.92854 0.90725 0.88198 0.89686 0.89877 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 9.37 37.16 0.35 -2.37 16 2 C 0.09 1.49 2.79 -67.71 -0.19 1.30 16 3 H 0.08 1.54 6.45 -51.93 -0.33 1.21 16 4 N -0.84 -10.88 8.53 -4.67 -0.04 -10.92 16 5 C 0.09 1.56 1.99 -67.71 -0.13 1.43 16 6 H 0.07 1.09 7.18 -51.93 -0.37 0.72 16 7 C -0.17 -2.91 8.36 37.15 0.31 -2.60 16 8 N -0.49 -9.92 3.58 -220.15 -0.79 -10.71 16 9 C 0.16 3.90 2.36 -4.98 -0.01 3.89 16 10 C -0.50 -13.95 9.53 -34.44 -0.33 -14.28 16 11 H 0.08 2.50 7.41 -52.49 -0.39 2.11 16 12 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 13 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 14 Si 0.87 21.68 27.52 -169.99 -4.68 17.00 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 H -0.27 -6.42 6.47 56.52 0.37 -6.06 16 18 C 0.04 0.66 4.04 -67.72 -0.27 0.39 16 19 C -0.15 -2.68 9.96 -26.74 -0.27 -2.95 16 20 C -0.19 -2.95 9.70 -26.74 -0.26 -3.21 16 21 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 23 H 0.09 1.64 7.44 -51.93 -0.39 1.25 16 24 H 0.34 3.81 9.07 -39.29 -0.36 3.45 16 25 H 0.33 3.76 9.00 -39.29 -0.35 3.40 16 26 H 0.06 0.97 7.65 -51.93 -0.40 0.57 16 27 H 0.04 0.73 7.44 -51.93 -0.39 0.34 16 28 H 0.05 1.03 6.66 -51.92 -0.35 0.68 16 29 H -0.01 -0.33 6.79 -51.92 -0.35 -0.69 16 30 H 0.03 0.72 4.86 -51.93 -0.25 0.47 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.08 1.45 7.77 -51.93 -0.40 1.05 16 33 H 0.10 1.97 7.99 -51.93 -0.41 1.55 16 34 H 0.08 1.43 8.14 -51.92 -0.42 1.01 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.09 1.36 7.89 -51.93 -0.41 0.95 16 LS Contribution 282.32 15.07 4.25 4.25 Total: -1.00 -29.42 282.32 -7.40 -36.81 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.02 Total: 7.05 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -0.90 Total: -16.58 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.05 Total: -48.54 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.68 Total: 17.00 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.42 -7.40 -36.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379346325.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.418 kcal (2) G-P(sol) polarization free energy of solvation -29.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds