Wall clock time and date at job start Mon Mar 30 2020 03:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46986 * 2 1 4 4 N 1.46898 * 109.47103 * 120.00116 * 2 1 3 5 5 C 1.53001 * 109.47038 * 239.99929 * 2 1 3 6 6 H 1.09001 * 109.47274 * 298.48386 * 5 2 1 7 7 C 1.52992 * 109.47202 * 178.48101 * 5 2 1 8 8 N 1.46906 * 109.46838 * 58.48238 * 5 2 1 9 9 C 1.46890 * 111.00339 * 69.19859 * 8 5 2 10 10 C 1.50699 * 109.47304 * 199.24013 * 9 8 5 11 11 H 1.07998 * 120.00274 * 357.48426 * 10 9 8 12 12 C 1.37881 * 119.99940 * 177.20967 * 10 9 8 13 13 N 1.31514 * 119.99794 * 180.27619 * 12 10 9 14 14 Si 1.86797 * 120.00103 * 0.27218 * 12 10 9 15 15 H 1.48497 * 109.47206 * 89.99954 * 14 12 10 16 16 H 1.48503 * 109.47266 * 210.00258 * 14 12 10 17 17 H 1.48506 * 109.47213 * 330.00292 * 14 12 10 18 18 C 1.46901 * 110.99590 * 193.15703 * 8 5 2 19 19 C 1.52999 * 117.49931 * 134.40623 * 18 8 5 20 20 C 1.52991 * 59.99998 * 252.50677 * 19 18 8 21 21 H 1.08996 * 109.46967 * 183.88127 * 1 2 3 22 22 H 1.09007 * 109.46786 * 303.88249 * 1 2 3 23 23 H 1.09004 * 109.47461 * 63.87623 * 1 2 3 24 24 H 1.00896 * 110.99650 * 296.04417 * 4 2 1 25 25 H 1.00899 * 110.99855 * 59.99588 * 4 2 1 26 26 H 1.09001 * 109.47297 * 59.99928 * 7 5 2 27 27 H 1.09004 * 109.47089 * 180.02562 * 7 5 2 28 28 H 1.09010 * 109.47084 * 300.00072 * 7 5 2 29 29 H 1.09007 * 109.47097 * 79.24146 * 9 8 5 30 30 H 1.09003 * 109.47192 * 319.24650 * 9 8 5 31 31 H 0.97005 * 119.99836 * 179.97438 * 13 12 10 32 32 H 1.09003 * 115.54865 * 280.11132 * 18 8 5 33 33 H 1.08997 * 117.50209 * 359.97438 * 19 18 8 34 34 H 1.09008 * 117.49796 * 145.01346 * 19 18 8 35 35 H 1.09005 * 117.50000 * 252.50882 * 20 19 18 36 36 H 1.08999 * 117.50221 * 107.48873 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0400 -0.7213 -1.2492 6 1 1.6990 -1.7565 -1.2358 7 6 3.5694 -0.6883 -1.2685 8 7 1.5205 -0.0502 -2.4484 9 6 2.1317 1.2749 -2.6166 10 6 1.2753 2.1105 -3.5328 11 1 0.3894 1.6852 -3.9808 12 6 1.6195 3.4197 -3.7945 13 7 0.8691 4.1505 -4.5897 14 14 3.1517 4.1554 -3.0195 15 1 4.3154 3.9312 -3.9142 16 1 2.9542 5.6137 -2.8202 17 1 3.4035 3.5062 -1.7078 18 6 1.7226 -0.8789 -3.6445 19 6 0.5456 -1.0227 -4.6113 20 6 0.9565 -2.2007 -3.7258 21 1 -0.3633 -1.0253 0.0696 22 1 -0.3633 0.5730 0.8532 23 1 -0.3634 0.4525 -0.9227 24 1 1.7503 -0.1989 2.0371 25 1 1.6961 -1.6479 1.2227 26 1 3.9549 -1.1861 -0.3788 27 1 3.9327 -1.2017 -2.1588 28 1 3.9104 0.3470 -1.2821 29 1 3.1260 1.1642 -3.0494 30 1 2.2105 1.7645 -1.6459 31 1 1.1112 5.0717 -4.7736 32 1 2.7249 -0.8509 -4.0719 33 1 -0.3788 -0.5029 -4.3598 34 1 0.7734 -1.0892 -5.6752 35 1 1.4547 -3.0424 -4.2071 36 1 0.3026 -2.4556 -2.8918 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379346325.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:06 Heat of formation + Delta-G solvation = 7.461680 kcal Electronic energy + Delta-G solvation = -15141.726922 eV Core-core repulsion = 12853.737559 eV Total energy + Delta-G solvation = -2287.989363 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.12966 -37.21737 -35.22016 -34.07745 -30.99218 -29.49228 -28.42395 -24.66224 -24.00830 -23.05422 -21.72740 -19.94695 -19.05948 -17.32778 -16.89207 -16.23735 -15.99947 -15.34727 -14.83911 -14.68370 -14.54647 -14.10461 -13.89568 -13.63835 -13.23238 -12.85281 -12.78712 -12.50106 -12.33365 -12.27392 -11.97125 -11.75345 -11.54733 -11.26218 -11.02537 -10.79571 -10.71035 -9.57382 -8.89305 -8.23618 -6.23435 1.32050 1.33668 1.43545 2.35166 3.01010 3.03396 3.13469 3.83626 3.90797 4.16088 4.20643 4.28133 4.37891 4.49227 4.55095 4.67277 4.73739 4.84742 4.89368 4.93006 5.02032 5.09574 5.11899 5.22698 5.30098 5.39738 5.42510 5.46368 5.63778 6.06379 6.31961 6.52320 6.69166 6.77420 6.84650 7.38946 8.93099 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.023626 B = 0.012482 C = 0.009941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.856006 B = 2242.736839 C = 2816.002153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.099 3.901 3 H 0.052 0.948 4 N -0.838 5.838 5 C 0.092 3.908 6 H 0.088 0.912 7 C -0.165 4.165 8 N -0.501 5.501 9 C 0.180 3.820 10 C -0.498 4.498 11 H 0.044 0.956 12 C 0.008 3.992 13 N -0.950 5.950 14 Si 0.934 3.066 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.253 1.253 18 C 0.008 3.992 19 C -0.168 4.168 20 C -0.145 4.145 21 H 0.062 0.938 22 H 0.051 0.949 23 H 0.048 0.952 24 H 0.349 0.651 25 H 0.347 0.653 26 H 0.080 0.920 27 H 0.046 0.954 28 H 0.031 0.969 29 H -0.019 1.019 30 H 0.027 0.973 31 H 0.263 0.737 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.915 -12.512 8.952 15.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.013 4.013 3 H 0.071 0.929 4 N -0.368 5.368 5 C -0.017 4.017 6 H 0.106 0.894 7 C -0.224 4.224 8 N -0.225 5.225 9 C 0.053 3.947 10 C -0.537 4.537 11 H 0.062 0.938 12 C -0.188 4.188 13 N -0.591 5.591 14 Si 0.759 3.241 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.176 1.176 18 C -0.101 4.101 19 C -0.206 4.206 20 C -0.182 4.182 21 H 0.081 0.919 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.162 0.838 25 H 0.160 0.840 26 H 0.099 0.901 27 H 0.065 0.935 28 H 0.051 0.949 29 H -0.002 1.002 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.133 0.867 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.130 -12.137 8.667 15.239 hybrid contribution 0.237 0.933 -0.108 0.968 sum 3.367 -11.205 8.559 14.496 Atomic orbital electron populations 1.22352 0.96896 1.01690 1.01696 1.21209 0.92931 0.97017 0.90168 0.92933 1.58791 1.67305 1.06917 1.03810 1.21633 0.92817 0.97882 0.89334 0.89386 1.22260 0.97359 1.00775 1.02004 1.61769 1.57548 1.01940 1.01206 1.19880 0.91976 0.87460 0.95371 1.21322 1.10089 0.95944 1.26331 0.93767 1.25726 0.99715 0.97642 0.95750 1.70045 1.40801 1.09161 1.39131 0.85901 0.80217 0.77811 0.80161 1.19662 1.20830 1.17645 1.22180 0.94701 0.98153 0.95091 1.22824 0.99118 1.02242 0.96384 1.23061 1.02453 0.90662 1.02016 0.91908 0.92962 0.93252 0.83794 0.83971 0.90104 0.93534 0.94948 1.00183 0.95548 0.92755 0.91346 0.90860 0.89037 0.86709 0.88238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.96 9.37 71.98 0.67 -4.28 16 2 C 0.10 2.99 2.79 44.92 0.13 3.11 16 3 H 0.05 1.92 6.45 -2.39 -0.02 1.91 16 4 N -0.84 -18.91 8.53 -168.68 -1.44 -20.35 16 5 C 0.09 2.94 1.99 44.91 0.09 3.03 16 6 H 0.09 2.49 7.18 -2.39 -0.02 2.48 16 7 C -0.17 -5.19 8.36 71.98 0.60 -4.59 16 8 N -0.50 -20.01 3.58 -850.43 -3.04 -23.05 16 9 C 0.18 8.65 2.36 85.56 0.20 8.85 16 10 C -0.50 -28.84 9.53 25.60 0.24 -28.60 16 11 H 0.04 2.84 7.41 -2.91 -0.02 2.81 16 12 C 0.01 0.48 5.47 84.66 0.46 0.95 16 13 N -0.95 -60.09 13.96 21.45 0.30 -59.79 16 14 Si 0.93 45.18 27.52 68.60 1.89 47.07 16 15 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 16 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 17 H -0.25 -11.51 6.47 99.48 0.64 -10.86 16 18 C 0.01 0.29 4.04 44.91 0.18 0.47 16 19 C -0.17 -6.06 9.96 30.59 0.30 -5.76 16 20 C -0.14 -4.08 9.70 30.59 0.30 -3.78 16 21 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 23 H 0.05 1.85 7.44 -2.38 -0.02 1.83 16 24 H 0.35 6.78 9.07 -89.70 -0.81 5.96 16 25 H 0.35 6.43 9.00 -89.69 -0.81 5.62 16 26 H 0.08 2.23 7.65 -2.39 -0.02 2.21 16 27 H 0.05 1.42 7.44 -2.39 -0.02 1.40 16 28 H 0.03 1.15 6.66 -2.38 -0.02 1.13 16 29 H -0.02 -0.95 6.79 -2.38 -0.02 -0.97 16 30 H 0.03 1.29 4.86 -2.39 -0.01 1.28 16 31 H 0.26 15.64 8.31 -92.70 -0.77 14.87 16 32 H 0.07 2.61 7.77 -2.39 -0.02 2.60 16 33 H 0.07 3.02 7.99 -2.39 -0.02 3.00 16 34 H 0.09 3.11 8.14 -2.38 -0.02 3.09 16 35 H 0.11 2.58 8.14 -2.38 -0.02 2.56 16 36 H 0.10 2.65 7.89 -2.39 -0.02 2.63 16 Total: -1.00 -65.20 282.32 0.27 -64.93 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: -0.62 Total: 21.79 kcal Atomic # 6 Polarization: -33.78 SS G_CDS: 3.18 Total: -30.60 kcal Atomic # 7 Polarization: -99.01 SS G_CDS: -4.18 Total: -103.20 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.89 Total: 47.07 kcal Total: -65.20 0.27 -64.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379346325.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.392 kcal (2) G-P(sol) polarization free energy of solvation -65.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds