Wall clock time and date at job start Mon Mar 30 2020 03:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47459 * 2 1 4 4 C 1.53005 * 109.47059 * 240.00469 * 2 1 3 5 5 H 1.09000 * 109.47477 * 183.16683 * 4 2 1 6 6 C 1.53002 * 109.46926 * 63.16765 * 4 2 1 7 7 N 1.46896 * 109.46913 * 303.16932 * 4 2 1 8 8 N 1.46894 * 109.47547 * 120.00536 * 2 1 3 9 9 C 1.46906 * 110.99988 * 294.17491 * 8 2 1 10 10 C 1.50693 * 109.47339 * 162.90338 * 9 8 2 11 11 H 1.07996 * 120.00058 * 4.33305 * 10 9 8 12 12 C 1.37873 * 119.99959 * 184.33665 * 10 9 8 13 13 N 1.31518 * 120.00050 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99987 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47281 * 90.00200 * 14 12 10 16 16 H 1.48503 * 109.47282 * 209.99951 * 14 12 10 17 17 H 1.48503 * 109.47337 * 330.00028 * 14 12 10 18 18 C 1.46898 * 111.00538 * 170.21731 * 8 2 1 19 19 C 1.53002 * 117.50117 * 128.58559 * 18 8 2 20 20 C 1.52999 * 117.49781 * 59.92471 * 18 8 2 21 21 H 1.09001 * 109.46796 * 299.99626 * 1 2 3 22 22 H 1.08999 * 109.47021 * 59.99150 * 1 2 3 23 23 H 1.08997 * 109.46960 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47391 * 294.04179 * 6 4 2 25 25 H 1.08995 * 109.47459 * 54.04460 * 6 4 2 26 26 H 1.08999 * 109.47053 * 174.04770 * 6 4 2 27 27 H 1.00907 * 111.00310 * 60.00184 * 7 4 2 28 28 H 1.00906 * 110.99919 * 183.95344 * 7 4 2 29 29 H 1.08999 * 109.46490 * 282.90090 * 9 8 2 30 30 H 1.08997 * 109.46924 * 42.89541 * 9 8 2 31 31 H 0.97001 * 119.99737 * 179.97438 * 13 12 10 32 32 H 1.08996 * 115.54732 * 274.25706 * 18 8 2 33 33 H 1.09000 * 117.49451 * 0.02562 * 19 18 8 34 34 H 1.08997 * 117.49294 * 145.02443 * 19 18 8 35 35 H 1.08998 * 117.49882 * 214.98437 * 20 18 8 36 36 H 1.08999 * 117.49768 * 0.02562 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 3.1286 -0.7706 -1.2215 6 6 1.5961 0.0448 -2.4972 7 7 1.4888 -2.0822 -1.2883 8 7 2.0198 -0.6926 1.1993 9 6 1.6658 0.0491 2.4170 10 6 1.7961 -0.8579 3.6133 11 1 2.1770 -1.8610 3.4915 12 6 1.4288 -0.4070 4.8634 13 7 0.9652 0.8148 5.0119 14 14 1.5896 -1.5316 6.3464 15 1 2.9343 -1.3615 6.9531 16 1 0.5480 -1.1843 7.3462 17 1 1.4144 -2.9429 5.9188 18 6 3.4694 -0.9173 1.1225 19 6 4.3182 -0.4678 2.3135 20 6 4.3695 0.3137 0.9983 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 0.5102 0.0037 -2.5817 25 1 1.9153 1.0840 -2.4185 26 1 2.0466 -0.4077 -3.3807 27 1 0.4803 -2.0634 -1.3147 28 1 1.8613 -2.6010 -2.0695 29 1 2.3367 0.9004 2.5317 30 1 0.6381 0.4041 2.3403 31 1 0.7065 1.1318 5.8913 32 1 3.7778 -1.8213 0.5974 33 1 3.8007 -0.0056 3.1543 34 1 5.1851 -1.0759 2.5716 35 1 5.2703 0.2194 0.3918 36 1 3.8860 1.2903 0.9740 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379346326.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:09 Heat of formation + Delta-G solvation = 34.563431 kcal Electronic energy + Delta-G solvation = -15152.679861 eV Core-core repulsion = 12865.865718 eV Total energy + Delta-G solvation = -2286.814143 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.82807 -35.97085 -32.99637 -31.98134 -29.12111 -27.95301 -26.84422 -23.65403 -22.13493 -21.35988 -20.04941 -17.93480 -16.50859 -15.90898 -15.81505 -14.65520 -14.17156 -13.94202 -13.67131 -12.93780 -12.59806 -12.47289 -12.10206 -12.04834 -11.47502 -11.24487 -11.04863 -10.95702 -10.71793 -10.57722 -10.13483 -9.99450 -9.74204 -9.57330 -9.14584 -9.02888 -8.34077 -8.20710 -6.96589 -5.94140 -3.92112 3.37333 3.43626 3.49402 4.48656 4.66197 4.85230 5.05617 5.16512 5.38408 5.42889 5.52395 5.76403 5.81670 5.83899 5.89310 5.93872 6.01976 6.10175 6.24200 6.31020 6.40423 6.59694 6.74371 6.87503 6.90283 7.26722 7.34801 7.50850 7.58817 7.83462 7.96089 8.25078 8.40825 8.69463 9.16457 9.69406 11.16152 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037800 B = 0.009332 C = 0.008610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.553295 B = 2999.565415 C = 3251.192277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.094 3.906 3 H 0.028 0.972 4 C 0.095 3.905 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.824 5.824 8 N -0.484 5.484 9 C 0.181 3.819 10 C -0.488 4.488 11 H 0.064 0.936 12 C 0.051 3.949 13 N -0.902 5.902 14 Si 0.894 3.106 15 H -0.282 1.282 16 H -0.289 1.289 17 H -0.273 1.273 18 C 0.050 3.950 19 C -0.176 4.176 20 C -0.239 4.239 21 H 0.063 0.937 22 H 0.044 0.956 23 H 0.064 0.936 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.337 0.663 28 H 0.327 0.673 29 H -0.009 1.009 30 H 0.035 0.965 31 H 0.259 0.741 32 H 0.106 0.894 33 H 0.133 0.867 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.135 -1.450 -11.867 12.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.015 4.015 3 H 0.046 0.954 4 C -0.018 4.018 5 H 0.098 0.902 6 C -0.247 4.247 7 N -0.353 5.353 8 N -0.206 5.206 9 C 0.056 3.944 10 C -0.526 4.526 11 H 0.082 0.918 12 C -0.149 4.149 13 N -0.543 5.543 14 Si 0.722 3.278 15 H -0.209 1.209 16 H -0.215 1.215 17 H -0.198 1.198 18 C -0.060 4.060 19 C -0.213 4.213 20 C -0.278 4.278 21 H 0.082 0.918 22 H 0.062 0.938 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.151 0.849 28 H 0.138 0.862 29 H 0.009 0.991 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.151 0.849 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.150 -1.896 -10.978 11.346 hybrid contribution 0.118 0.687 -0.105 0.705 sum 2.268 -1.209 -11.082 11.376 Atomic orbital electron populations 1.21898 0.95308 1.02258 1.00938 1.21471 0.95151 0.94205 0.90675 0.95409 1.21470 0.99510 0.88052 0.92723 0.90246 1.22709 1.01472 1.01556 0.98972 1.58719 1.12006 1.14621 1.49947 1.62112 1.08748 1.48167 1.01593 1.19940 0.96058 0.92344 0.86029 1.21152 1.40829 0.99828 0.90825 0.91756 1.24976 0.95779 0.95183 0.98980 1.69963 1.44649 1.16402 1.23278 0.86552 0.77517 0.81235 0.82464 1.20880 1.21492 1.19798 1.22483 0.86513 0.95337 1.01669 1.23553 1.01129 1.02781 0.93817 1.23365 1.03020 0.98080 1.03351 0.91808 0.93750 0.91656 0.92599 0.92449 0.93279 0.84866 0.86186 0.99147 0.94737 0.93135 0.87651 0.84905 0.90405 0.90461 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 8.46 37.16 0.31 -2.20 16 2 C 0.09 1.70 1.62 -67.71 -0.11 1.59 16 3 H 0.03 0.53 7.47 -51.93 -0.39 0.15 16 4 C 0.09 1.38 2.81 -67.71 -0.19 1.19 16 5 H 0.08 1.22 6.55 -51.93 -0.34 0.88 16 6 C -0.19 -2.23 9.04 37.16 0.34 -1.90 16 7 N -0.82 -11.53 9.02 -4.67 -0.04 -11.58 16 8 N -0.48 -10.44 4.43 -220.15 -0.98 -11.42 16 9 C 0.18 4.67 4.14 -4.98 -0.02 4.65 16 10 C -0.49 -13.59 6.77 -34.45 -0.23 -13.83 16 11 H 0.06 1.83 7.79 -52.49 -0.41 1.42 16 12 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 13 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 14 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 17 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 18 C 0.05 0.99 4.40 -67.71 -0.30 0.70 16 19 C -0.18 -3.64 8.88 -26.69 -0.24 -3.87 16 20 C -0.24 -4.38 9.24 -26.69 -0.25 -4.63 16 21 H 0.06 1.25 6.26 -51.93 -0.33 0.92 16 22 H 0.04 0.63 6.65 -51.93 -0.35 0.29 16 23 H 0.06 1.11 6.62 -51.93 -0.34 0.77 16 24 H 0.05 0.64 6.82 -51.93 -0.35 0.28 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.34 4.52 7.08 -39.29 -0.28 4.25 16 28 H 0.33 3.77 9.07 -39.29 -0.36 3.41 16 29 H -0.01 -0.25 6.02 -51.93 -0.31 -0.56 16 30 H 0.03 0.96 5.90 -51.93 -0.31 0.65 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.11 2.03 7.95 -51.93 -0.41 1.61 16 33 H 0.13 3.26 4.87 -51.93 -0.25 3.01 16 34 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.08 1.59 7.27 -51.93 -0.38 1.21 16 LS Contribution 275.62 15.07 4.15 4.15 Total: -1.00 -29.22 275.62 -7.56 -36.78 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.63 Total: 8.12 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -0.78 Total: -16.94 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.28 Total: -49.02 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.22 -7.56 -36.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379346326.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.339 kcal (2) G-P(sol) polarization free energy of solvation -29.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds