Wall clock time and date at job start Mon Mar 30 2020 03:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47028 * 2 1 4 4 N 1.46900 * 109.47222 * 239.99974 * 2 1 3 5 5 C 1.52999 * 109.47173 * 119.99986 * 2 1 3 6 6 H 1.09005 * 109.47091 * 55.00054 * 5 2 1 7 7 C 1.52999 * 109.47214 * 295.00074 * 5 2 1 8 8 N 1.46901 * 109.47319 * 174.99988 * 5 2 1 9 9 C 1.46902 * 111.00386 * 190.78149 * 8 5 2 10 10 C 1.50701 * 109.47153 * 160.13237 * 9 8 5 11 11 H 1.07995 * 119.99986 * 354.71272 * 10 9 8 12 12 C 1.37882 * 119.99613 * 174.71464 * 10 9 8 13 13 N 1.31509 * 119.99898 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99716 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47258 * 89.99869 * 14 12 10 16 16 H 1.48493 * 109.46929 * 209.99777 * 14 12 10 17 17 H 1.48500 * 109.47159 * 329.99821 * 14 12 10 18 18 C 1.46899 * 110.99906 * 66.82732 * 8 5 2 19 19 C 1.52999 * 117.50100 * 261.59717 * 18 8 5 20 20 C 1.52998 * 117.50053 * 192.93957 * 18 8 5 21 21 H 1.08997 * 109.46749 * 299.99726 * 1 2 3 22 22 H 1.09000 * 109.47130 * 60.00416 * 1 2 3 23 23 H 1.09000 * 109.47028 * 179.97438 * 1 2 3 24 24 H 1.00896 * 111.00205 * 176.04908 * 4 2 1 25 25 H 1.00903 * 111.00364 * 299.99835 * 4 2 1 26 26 H 1.09001 * 109.47395 * 187.16130 * 7 5 2 27 27 H 1.09000 * 109.46967 * 307.15371 * 7 5 2 28 28 H 1.08997 * 109.46997 * 67.15366 * 7 5 2 29 29 H 1.08996 * 109.47176 * 280.13583 * 9 8 5 30 30 H 1.09006 * 109.46788 * 40.13461 * 9 8 5 31 31 H 0.97003 * 119.99846 * 180.02562 * 13 12 10 32 32 H 1.08995 * 115.55094 * 47.27004 * 18 8 5 33 33 H 1.09003 * 117.49767 * 0.02562 * 19 18 8 34 34 H 1.08999 * 117.50104 * 145.01816 * 19 18 8 35 35 H 1.09000 * 117.50334 * 214.98503 * 20 18 8 36 36 H 1.09000 * 117.49907 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7212 1.2492 6 1 1.6054 -1.7198 1.2951 7 6 1.6353 0.0689 2.4953 8 7 3.5041 -0.8267 1.1904 9 6 4.0093 -1.7289 2.2338 10 6 5.3931 -2.1983 1.8651 11 1 5.8175 -1.9297 0.9091 12 6 6.1171 -2.9708 2.7484 13 7 5.6003 -3.2975 3.9127 14 14 7.8326 -3.5521 2.2916 15 1 8.8309 -2.5475 2.7382 16 1 8.1077 -4.8519 2.9549 17 1 7.9230 -3.7189 0.8188 18 6 4.1317 0.4977 1.2906 19 6 4.5678 1.1731 -0.0111 20 6 5.6184 0.6029 0.9450 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.0262 -0.6501 -1.2558 25 1 1.6962 -1.6480 -1.2228 26 1 2.1045 -0.3732 3.3742 27 1 1.9615 1.1037 2.3912 28 1 0.5516 0.0392 2.6082 29 1 4.0470 -1.1989 3.1855 30 1 3.3456 -2.5890 2.3230 31 1 6.1099 -3.8406 4.5343 32 1 3.7538 1.1379 2.0877 33 1 4.3887 0.6349 -0.9419 34 1 4.4772 2.2577 -0.0703 35 1 6.2185 1.3126 1.5145 36 1 6.1309 -0.3106 0.6437 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379346327.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:12 Heat of formation + Delta-G solvation = 25.261280 kcal Electronic energy + Delta-G solvation = -15145.338826 eV Core-core repulsion = 12858.121311 eV Total energy + Delta-G solvation = -2287.217514 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.73225 -35.51081 -33.43626 -32.21798 -29.70952 -27.86317 -26.19922 -23.35056 -22.27339 -21.57623 -20.53635 -18.52308 -16.68310 -15.62761 -15.22483 -14.59675 -14.46463 -13.97737 -13.58399 -13.43187 -12.44926 -12.26868 -12.15184 -11.83854 -11.55353 -11.47693 -11.18016 -11.00285 -10.76099 -10.74403 -10.53340 -10.29578 -9.90806 -9.56412 -9.16063 -9.10908 -8.40984 -8.15981 -7.28082 -6.02232 -4.02298 3.30474 3.37193 3.40424 4.39262 4.58507 4.73649 5.11460 5.19686 5.32764 5.59507 5.64012 5.66923 5.72106 5.77255 5.83986 5.94633 6.06191 6.19050 6.25232 6.26865 6.35988 6.45068 6.54558 6.66070 6.76684 7.01335 7.20670 7.39603 7.68149 7.84549 8.01748 8.11504 8.19850 8.53950 9.03936 9.60514 11.08258 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036348 B = 0.009411 C = 0.008704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.143157 B = 2974.618561 C = 3216.131694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.098 3.902 3 H 0.075 0.925 4 N -0.838 5.838 5 C 0.048 3.952 6 H 0.072 0.928 7 C -0.180 4.180 8 N -0.505 5.505 9 C 0.198 3.802 10 C -0.498 4.498 11 H 0.067 0.933 12 C 0.053 3.947 13 N -0.900 5.900 14 Si 0.894 3.106 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.273 1.273 18 C 0.023 3.977 19 C -0.186 4.186 20 C -0.158 4.158 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.050 0.950 24 H 0.350 0.650 25 H 0.331 0.669 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.051 0.949 29 H -0.001 1.001 30 H 0.021 0.979 31 H 0.260 0.740 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.038 6.844 -5.323 10.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.014 4.014 3 H 0.093 0.907 4 N -0.367 5.367 5 C -0.063 4.063 6 H 0.090 0.910 7 C -0.240 4.240 8 N -0.229 5.229 9 C 0.073 3.927 10 C -0.537 4.537 11 H 0.085 0.915 12 C -0.147 4.147 13 N -0.540 5.540 14 Si 0.722 3.278 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.198 1.198 18 C -0.086 4.086 19 C -0.224 4.224 20 C -0.195 4.195 21 H 0.074 0.926 22 H 0.076 0.924 23 H 0.069 0.931 24 H 0.166 0.834 25 H 0.142 0.858 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.016 0.984 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.274 7.071 -6.035 11.216 hybrid contribution 1.212 -0.703 1.619 2.141 sum -5.062 6.369 -4.416 9.256 Atomic orbital electron populations 1.21828 0.95502 1.01546 1.01276 1.21375 0.93871 0.98124 0.88074 0.90700 1.59220 1.17788 1.20492 1.39201 1.22535 0.90276 0.98878 0.94576 0.90971 1.22430 1.00776 1.00847 0.99926 1.62064 1.01933 1.07976 1.50898 1.19673 0.95406 0.89904 0.87712 1.21223 0.99558 1.30675 1.02205 0.91499 1.24985 0.98248 0.96477 0.95028 1.69955 1.37682 1.38301 1.08052 0.86565 0.84596 0.78067 0.78607 1.20769 1.21381 1.19806 1.22105 0.97535 0.92411 0.96547 1.23074 1.05971 0.98294 0.95029 1.23144 0.91743 1.02941 1.01719 0.92595 0.92445 0.93105 0.83445 0.85770 0.92306 0.92840 0.93022 0.98353 0.96107 0.93047 0.90963 0.88862 0.90345 0.90343 0.86476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.25 37.16 0.34 -1.48 16 2 C 0.10 1.47 2.55 -67.71 -0.17 1.29 16 3 H 0.07 1.17 6.98 -51.93 -0.36 0.81 16 4 N -0.84 -12.71 9.18 -4.67 -0.04 -12.75 16 5 C 0.05 0.84 2.03 -67.71 -0.14 0.70 16 6 H 0.07 1.33 7.81 -51.93 -0.41 0.92 16 7 C -0.18 -2.94 8.01 37.16 0.30 -2.65 16 8 N -0.50 -10.20 3.75 -220.15 -0.82 -11.03 16 9 C 0.20 4.98 4.12 -4.97 -0.02 4.96 16 10 C -0.50 -13.45 7.82 -34.44 -0.27 -13.72 16 11 H 0.07 1.78 5.72 -52.49 -0.30 1.48 16 12 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 13 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 14 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 C 0.02 0.44 3.75 -67.71 -0.25 0.18 16 19 C -0.19 -3.02 9.33 -26.70 -0.25 -3.27 16 20 C -0.16 -2.98 9.47 -26.70 -0.25 -3.23 16 21 H 0.06 0.66 6.73 -51.93 -0.35 0.31 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.35 5.74 6.38 -39.29 -0.25 5.49 16 25 H 0.33 4.91 9.00 -39.29 -0.35 4.55 16 26 H 0.06 1.10 6.92 -51.93 -0.36 0.74 16 27 H 0.05 0.83 6.53 -51.93 -0.34 0.50 16 28 H 0.05 0.73 6.93 -51.93 -0.36 0.37 16 29 H 0.00 -0.04 7.29 -51.93 -0.38 -0.42 16 30 H 0.02 0.57 7.72 -51.93 -0.40 0.17 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.07 1.37 6.17 -51.93 -0.32 1.05 16 33 H 0.09 1.52 6.35 -51.93 -0.33 1.19 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.12 2.48 5.38 -51.93 -0.28 2.20 16 LS Contribution 275.62 15.07 4.15 4.15 Total: -1.00 -27.75 275.62 -7.42 -35.18 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -5.61 Total: 9.63 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -0.81 Total: -15.83 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: -0.13 Total: -49.52 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.75 -7.42 -35.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379346327.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.437 kcal (2) G-P(sol) polarization free energy of solvation -27.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds