Wall clock time and date at job start Mon Mar 30 2020 03:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47028 * 2 1 4 4 N 1.46900 * 109.47222 * 239.99974 * 2 1 3 5 5 C 1.52999 * 109.47173 * 119.99986 * 2 1 3 6 6 H 1.09005 * 109.47091 * 55.00054 * 5 2 1 7 7 C 1.52999 * 109.47214 * 295.00074 * 5 2 1 8 8 N 1.46901 * 109.47319 * 174.99988 * 5 2 1 9 9 C 1.46902 * 111.00386 * 190.78149 * 8 5 2 10 10 C 1.50701 * 109.47153 * 160.13237 * 9 8 5 11 11 H 1.07995 * 119.99986 * 354.71272 * 10 9 8 12 12 C 1.37882 * 119.99613 * 174.71464 * 10 9 8 13 13 N 1.31509 * 119.99898 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99716 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47258 * 89.99869 * 14 12 10 16 16 H 1.48493 * 109.46929 * 209.99777 * 14 12 10 17 17 H 1.48500 * 109.47159 * 329.99821 * 14 12 10 18 18 C 1.46899 * 110.99906 * 66.82732 * 8 5 2 19 19 C 1.52999 * 117.50100 * 261.59717 * 18 8 5 20 20 C 1.52998 * 117.50053 * 192.93957 * 18 8 5 21 21 H 1.08997 * 109.46749 * 299.99726 * 1 2 3 22 22 H 1.09000 * 109.47130 * 60.00416 * 1 2 3 23 23 H 1.09000 * 109.47028 * 179.97438 * 1 2 3 24 24 H 1.00896 * 111.00205 * 176.04908 * 4 2 1 25 25 H 1.00903 * 111.00364 * 299.99835 * 4 2 1 26 26 H 1.09001 * 109.47395 * 187.16130 * 7 5 2 27 27 H 1.09000 * 109.46967 * 307.15371 * 7 5 2 28 28 H 1.08997 * 109.46997 * 67.15366 * 7 5 2 29 29 H 1.08996 * 109.47176 * 280.13583 * 9 8 5 30 30 H 1.09006 * 109.46788 * 40.13461 * 9 8 5 31 31 H 0.97003 * 119.99846 * 180.02562 * 13 12 10 32 32 H 1.08995 * 115.55094 * 47.27004 * 18 8 5 33 33 H 1.09003 * 117.49767 * 0.02562 * 19 18 8 34 34 H 1.08999 * 117.50104 * 145.01816 * 19 18 8 35 35 H 1.09000 * 117.50334 * 214.98503 * 20 18 8 36 36 H 1.09000 * 117.49907 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7212 1.2492 6 1 1.6054 -1.7198 1.2951 7 6 1.6353 0.0689 2.4953 8 7 3.5041 -0.8267 1.1904 9 6 4.0093 -1.7289 2.2338 10 6 5.3931 -2.1983 1.8651 11 1 5.8175 -1.9297 0.9091 12 6 6.1171 -2.9708 2.7484 13 7 5.6003 -3.2975 3.9127 14 14 7.8326 -3.5521 2.2916 15 1 8.8309 -2.5475 2.7382 16 1 8.1077 -4.8519 2.9549 17 1 7.9230 -3.7189 0.8188 18 6 4.1317 0.4977 1.2906 19 6 4.5678 1.1731 -0.0111 20 6 5.6184 0.6029 0.9450 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.0262 -0.6501 -1.2558 25 1 1.6962 -1.6480 -1.2228 26 1 2.1045 -0.3732 3.3742 27 1 1.9615 1.1037 2.3912 28 1 0.5516 0.0392 2.6082 29 1 4.0470 -1.1989 3.1855 30 1 3.3456 -2.5890 2.3230 31 1 6.1099 -3.8406 4.5343 32 1 3.7538 1.1379 2.0877 33 1 4.3887 0.6349 -0.9419 34 1 4.4772 2.2577 -0.0703 35 1 6.2185 1.3126 1.5145 36 1 6.1309 -0.3106 0.6437 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379346327.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:12 Heat of formation + Delta-G solvation = 6.170018 kcal Electronic energy + Delta-G solvation = -15146.166685 eV Core-core repulsion = 12858.121311 eV Total energy + Delta-G solvation = -2288.045374 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.22117 -36.86858 -35.26735 -33.96791 -31.19639 -29.27995 -27.91817 -24.91574 -24.01008 -23.00544 -21.96136 -20.01506 -18.62992 -17.00170 -16.86534 -16.42959 -15.85934 -15.48463 -15.14706 -14.71021 -14.22017 -13.96626 -13.60977 -13.29755 -13.09293 -12.91364 -12.74459 -12.63609 -12.38642 -12.15520 -12.08566 -11.72507 -11.61256 -11.20275 -11.02663 -10.65745 -10.52805 -9.46597 -8.94150 -8.16284 -6.23801 1.40431 1.40907 1.51866 2.40423 3.05690 3.15576 3.24681 3.84968 3.92267 4.20780 4.24430 4.32993 4.38085 4.51718 4.54577 4.66134 4.75241 4.90186 4.93322 5.01607 5.07315 5.10923 5.14899 5.23973 5.35775 5.38903 5.47444 5.50772 5.77471 6.11640 6.39442 6.47407 6.68792 6.74742 6.92322 7.44103 8.94119 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036348 B = 0.009411 C = 0.008704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.143157 B = 2974.618561 C = 3216.131694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.108 3.892 3 H 0.076 0.924 4 N -0.834 5.834 5 C 0.046 3.954 6 H 0.055 0.945 7 C -0.172 4.172 8 N -0.503 5.503 9 C 0.217 3.783 10 C -0.503 4.503 11 H 0.071 0.929 12 C -0.002 4.002 13 N -0.939 5.939 14 Si 0.961 3.039 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.264 1.264 18 C 0.003 3.997 19 C -0.145 4.145 20 C -0.175 4.175 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.051 0.949 24 H 0.344 0.656 25 H 0.333 0.667 26 H 0.025 0.975 27 H 0.063 0.937 28 H 0.077 0.923 29 H -0.036 1.036 30 H -0.010 1.010 31 H 0.260 0.740 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.170 8.147 -6.896 12.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.005 4.005 3 H 0.094 0.906 4 N -0.362 5.362 5 C -0.065 4.065 6 H 0.074 0.926 7 C -0.232 4.232 8 N -0.226 5.226 9 C 0.091 3.909 10 C -0.541 4.541 11 H 0.089 0.911 12 C -0.199 4.199 13 N -0.580 5.580 14 Si 0.787 3.213 15 H -0.200 1.200 16 H -0.213 1.213 17 H -0.188 1.188 18 C -0.106 4.106 19 C -0.183 4.183 20 C -0.213 4.213 21 H 0.086 0.914 22 H 0.087 0.913 23 H 0.070 0.930 24 H 0.158 0.842 25 H 0.144 0.856 26 H 0.044 0.956 27 H 0.082 0.918 28 H 0.096 0.904 29 H -0.018 1.018 30 H 0.008 0.992 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.422 8.391 -7.633 13.035 hybrid contribution 1.199 -1.081 2.101 2.650 sum -5.223 7.310 -5.532 10.551 Atomic orbital electron populations 1.21793 0.93404 1.02021 1.02412 1.21351 0.95409 0.97473 0.86275 0.90550 1.59258 1.17204 1.20716 1.39013 1.22661 0.88409 0.98726 0.96691 0.92633 1.22342 1.02186 1.00767 0.97864 1.61976 1.03827 1.08434 1.48376 1.19259 0.94498 0.89521 0.87669 1.21546 1.00237 1.30115 1.02199 0.91104 1.25861 1.02347 0.96742 0.94935 1.70097 1.39373 1.39303 1.09244 0.85497 0.79710 0.77452 0.78678 1.20048 1.21306 1.18779 1.22203 0.97694 0.91899 0.98818 1.23092 1.01960 0.99758 0.93478 1.23092 0.91855 1.02678 1.03636 0.91412 0.91350 0.93011 0.84237 0.85575 0.95602 0.91801 0.90437 1.01785 0.99206 0.93080 0.90938 0.88534 0.87273 0.89241 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.25 71.98 0.67 -2.46 16 2 C 0.11 2.98 2.55 44.92 0.11 3.10 16 3 H 0.08 2.14 6.98 -2.39 -0.02 2.12 16 4 N -0.83 -23.70 9.18 -168.68 -1.55 -25.24 16 5 C 0.05 1.57 2.03 44.91 0.09 1.66 16 6 H 0.06 2.08 7.81 -2.38 -0.02 2.06 16 7 C -0.17 -5.53 8.01 71.98 0.58 -4.96 16 8 N -0.50 -20.45 3.75 -850.41 -3.19 -23.63 16 9 C 0.22 11.34 4.12 85.56 0.35 11.69 16 10 C -0.50 -27.69 7.82 25.60 0.20 -27.49 16 11 H 0.07 3.80 5.72 -2.91 -0.02 3.78 16 12 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 13 N -0.94 -56.80 13.29 21.45 0.28 -56.51 16 14 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 15 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 16 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 17 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 18 C 0.00 0.10 3.75 44.91 0.17 0.27 16 19 C -0.15 -4.33 9.33 30.62 0.29 -4.04 16 20 C -0.18 -6.42 9.47 30.62 0.29 -6.13 16 21 H 0.07 1.38 6.73 -2.39 -0.02 1.36 16 22 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.34 10.65 6.38 -89.70 -0.57 10.07 16 25 H 0.33 9.39 9.00 -89.69 -0.81 8.59 16 26 H 0.02 0.98 6.92 -2.39 -0.02 0.96 16 27 H 0.06 1.90 6.53 -2.39 -0.02 1.89 16 28 H 0.08 2.06 6.93 -2.39 -0.02 2.04 16 29 H -0.04 -2.08 7.29 -2.39 -0.02 -2.10 16 30 H -0.01 -0.58 7.72 -2.38 -0.02 -0.60 16 31 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 32 H 0.07 2.68 6.17 -2.39 -0.01 2.66 16 33 H 0.10 2.86 6.35 -2.39 -0.02 2.85 16 34 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.09 3.84 5.38 -2.39 -0.01 3.83 16 Total: -1.00 -60.61 275.62 0.48 -60.13 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: -0.30 Total: 26.94 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: 3.21 Total: -28.01 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -4.45 Total: -105.39 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -60.61 0.48 -60.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379346327.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.296 kcal (2) G-P(sol) polarization free energy of solvation -60.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds