Wall clock time and date at job start Mon Mar 30 2020 03:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46898 * 2 1 4 4 N 1.46897 * 109.47247 * 119.99447 * 2 1 3 5 5 C 1.52996 * 109.47154 * 240.00157 * 2 1 3 6 6 H 1.09007 * 109.47064 * 174.99997 * 5 2 1 7 7 C 1.53000 * 109.46667 * 294.99489 * 5 2 1 8 8 N 1.46890 * 109.47480 * 54.99731 * 5 2 1 9 9 C 1.46897 * 111.00394 * 180.02562 * 8 5 2 10 10 C 1.50700 * 109.47722 * 163.20515 * 9 8 5 11 11 H 1.08002 * 119.99401 * 4.65516 * 10 9 8 12 12 C 1.37870 * 120.00094 * 184.64409 * 10 9 8 13 13 N 1.31510 * 120.00399 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99780 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46913 * 60.00776 * 14 12 10 16 16 H 1.48503 * 109.46895 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47297 * 300.00383 * 14 12 10 18 18 C 1.46899 * 111.00046 * 56.04673 * 8 5 2 19 19 C 1.53005 * 117.50018 * 127.17926 * 18 8 5 20 20 C 1.52993 * 60.00000 * 252.50995 * 19 18 8 21 21 H 1.09001 * 109.46895 * 300.00204 * 1 2 3 22 22 H 1.08998 * 109.46766 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46645 * 60.00187 * 1 2 3 24 24 H 1.00897 * 111.00252 * 176.04515 * 4 2 1 25 25 H 1.00905 * 111.00207 * 300.00523 * 4 2 1 26 26 H 1.08997 * 109.47814 * 299.99998 * 7 5 2 27 27 H 1.08995 * 109.47317 * 60.00549 * 7 5 2 28 28 H 1.08999 * 109.47029 * 180.02562 * 7 5 2 29 29 H 1.09007 * 109.47069 * 283.21247 * 9 8 5 30 30 H 1.09006 * 109.46921 * 43.20438 * 9 8 5 31 31 H 0.97003 * 120.00312 * 180.02562 * 13 12 10 32 32 H 1.08999 * 115.55182 * 272.88659 * 18 8 5 33 33 H 1.09004 * 117.49594 * 0.02562 * 19 18 8 34 34 H 1.08994 * 117.49719 * 145.02032 * 19 18 8 35 35 H 1.09001 * 117.50147 * 252.50895 * 20 19 18 36 36 H 1.09007 * 117.49781 * 107.48463 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0400 -0.7212 -1.2492 6 1 3.1264 -0.6443 -1.2951 7 6 1.6353 -2.1954 -1.1878 8 7 1.4543 -0.1020 -2.4456 9 6 1.9221 -0.7705 -3.6671 10 6 1.0178 -0.4073 -4.8165 11 1 0.2251 0.3121 -4.6733 12 6 1.2025 -0.9931 -6.0508 13 7 2.1676 -1.8693 -6.2251 14 14 0.0810 -0.5433 -7.4754 15 1 0.1885 0.9123 -7.7495 16 1 0.4853 -1.3061 -8.6837 17 1 -1.3226 -0.8787 -7.1255 18 6 1.7441 1.3375 -2.4888 19 6 2.3811 1.8919 -3.7647 20 6 3.2139 1.7626 -2.4878 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3632 0.5138 -0.8900 24 1 3.0262 -0.7625 1.1910 25 1 1.6961 -0.2348 2.0386 26 1 2.0699 -2.6550 -0.3001 27 1 0.5491 -2.2724 -1.1419 28 1 1.9990 -2.7094 -2.0776 29 1 2.9398 -0.4497 -3.8899 30 1 1.9059 -1.8504 -3.5192 31 1 2.2978 -2.2812 -7.0936 32 1 1.0352 1.9758 -1.9615 33 1 2.5847 1.1885 -4.5722 34 1 2.0912 2.8950 -4.0770 35 1 3.4719 2.6807 -1.9600 36 1 3.9658 0.9740 -2.4550 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379346328.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:15 Heat of formation + Delta-G solvation = 34.444901 kcal Electronic energy + Delta-G solvation = -15173.004853 eV Core-core repulsion = 12886.185570 eV Total energy + Delta-G solvation = -2286.819283 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.90118 -35.86078 -33.08402 -32.09666 -29.00769 -28.12923 -26.71855 -23.60414 -22.21715 -21.47771 -20.01796 -17.88854 -16.40043 -16.01097 -15.26475 -15.15692 -14.74302 -14.12947 -13.81528 -12.99622 -12.22603 -12.20618 -11.89552 -11.76727 -11.33037 -11.24344 -11.01829 -10.79151 -10.73012 -10.65322 -10.36495 -9.92955 -9.77908 -9.64445 -9.23116 -9.13366 -8.40887 -8.37572 -7.14966 -5.98683 -3.97598 3.35758 3.39987 3.43196 4.41776 4.55402 4.70858 5.03378 5.31624 5.36416 5.49352 5.64944 5.68727 5.78486 5.81549 6.10418 6.15151 6.20140 6.26663 6.39390 6.47902 6.60823 6.68363 6.75722 6.84803 7.01703 7.18578 7.27936 7.40334 7.45317 7.61997 7.88301 8.17476 8.28433 8.60041 9.09455 9.64127 11.11610 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036908 B = 0.009430 C = 0.008708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.460393 B = 2968.378742 C = 3214.806663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.096 3.904 3 H 0.029 0.971 4 N -0.844 5.844 5 C 0.093 3.907 6 H 0.023 0.977 7 C -0.134 4.134 8 N -0.496 5.496 9 C 0.183 3.817 10 C -0.493 4.493 11 H 0.063 0.937 12 C 0.053 3.947 13 N -0.900 5.900 14 Si 0.895 3.105 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.277 1.277 18 C 0.037 3.963 19 C -0.171 4.171 20 C -0.233 4.233 21 H 0.034 0.966 22 H 0.061 0.939 23 H 0.074 0.926 24 H 0.335 0.665 25 H 0.334 0.666 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.056 0.944 29 H -0.008 1.008 30 H 0.041 0.959 31 H 0.261 0.739 32 H 0.102 0.898 33 H 0.134 0.866 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.383 4.545 10.423 11.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.015 4.015 3 H 0.047 0.953 4 N -0.374 5.374 5 C -0.016 4.016 6 H 0.041 0.959 7 C -0.192 4.192 8 N -0.220 5.220 9 C 0.058 3.942 10 C -0.532 4.532 11 H 0.081 0.919 12 C -0.147 4.147 13 N -0.540 5.540 14 Si 0.723 3.277 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.203 1.203 18 C -0.073 4.073 19 C -0.208 4.208 20 C -0.273 4.273 21 H 0.053 0.947 22 H 0.080 0.920 23 H 0.093 0.907 24 H 0.147 0.853 25 H 0.146 0.854 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.010 0.990 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.120 0.880 33 H 0.151 0.849 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.489 3.719 10.029 10.707 hybrid contribution 0.916 1.289 -0.690 1.725 sum 0.427 5.008 9.339 10.606 Atomic orbital electron populations 1.21717 0.94049 1.02500 1.00826 1.21296 0.96275 0.94262 0.89676 0.95279 1.58742 1.15663 1.58849 1.04161 1.21435 0.95179 0.95013 0.90009 0.95868 1.21795 1.02031 0.94427 1.00928 1.62218 1.57307 0.99560 1.02936 1.19951 0.94061 0.94884 0.85315 1.21086 1.15039 1.23674 0.93383 0.91916 1.24963 0.95677 0.95280 0.98825 1.69944 1.31527 1.28637 1.23922 0.86607 0.81166 0.78357 0.81559 1.20351 1.21516 1.20263 1.22542 0.91788 0.91216 1.01755 1.23514 1.01911 1.02085 0.93265 1.23319 0.96878 1.02369 1.04721 0.94717 0.91970 0.90711 0.85290 0.85371 0.92414 0.92236 0.92554 0.99022 0.94100 0.92968 0.88004 0.84850 0.90255 0.90387 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.01 37.16 0.33 -1.69 16 2 C 0.10 1.45 2.82 -67.71 -0.19 1.26 16 3 H 0.03 0.45 7.27 -51.93 -0.38 0.07 16 4 N -0.84 -10.71 8.27 -4.67 -0.04 -10.75 16 5 C 0.09 1.69 1.80 -67.72 -0.12 1.57 16 6 H 0.02 0.45 7.19 -51.92 -0.37 0.08 16 7 C -0.13 -2.47 8.56 37.16 0.32 -2.15 16 8 N -0.50 -10.45 3.65 -220.15 -0.80 -11.25 16 9 C 0.18 4.63 4.13 -4.98 -0.02 4.60 16 10 C -0.49 -13.46 6.84 -34.44 -0.24 -13.70 16 11 H 0.06 1.73 7.79 -52.49 -0.41 1.32 16 12 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 13 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 14 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 C 0.04 0.71 4.31 -67.71 -0.29 0.41 16 19 C -0.17 -3.42 8.86 -26.73 -0.24 -3.65 16 20 C -0.23 -4.17 9.38 -26.74 -0.25 -4.42 16 21 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.06 0.99 6.57 -51.93 -0.34 0.65 16 23 H 0.07 1.25 6.87 -51.93 -0.36 0.90 16 24 H 0.34 3.93 8.99 -39.29 -0.35 3.58 16 25 H 0.33 3.55 9.04 -39.29 -0.36 3.20 16 26 H 0.06 0.95 7.47 -51.93 -0.39 0.56 16 27 H 0.06 1.11 6.57 -51.93 -0.34 0.77 16 28 H 0.06 1.15 6.08 -51.93 -0.32 0.83 16 29 H -0.01 -0.21 6.06 -51.93 -0.31 -0.53 16 30 H 0.04 1.12 5.60 -51.93 -0.29 0.83 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.10 1.81 7.79 -51.93 -0.40 1.41 16 33 H 0.13 3.18 4.91 -51.93 -0.25 2.93 16 34 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.08 1.58 7.19 -51.93 -0.37 1.21 16 LS Contribution 275.35 15.07 4.15 4.15 Total: -1.00 -28.29 275.35 -7.42 -35.71 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.65 Total: 7.59 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -0.79 Total: -16.37 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.10 Total: -47.65 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.29 -7.42 -35.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379346328.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.151 kcal (2) G-P(sol) polarization free energy of solvation -28.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds