Wall clock time and date at job start Mon Mar 30 2020 03:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46898 * 2 1 4 4 N 1.46897 * 109.47247 * 119.99447 * 2 1 3 5 5 C 1.52996 * 109.47154 * 240.00157 * 2 1 3 6 6 H 1.09007 * 109.47064 * 174.99997 * 5 2 1 7 7 C 1.53000 * 109.46667 * 294.99489 * 5 2 1 8 8 N 1.46890 * 109.47480 * 54.99731 * 5 2 1 9 9 C 1.46897 * 111.00394 * 180.02562 * 8 5 2 10 10 C 1.50700 * 109.47722 * 163.20515 * 9 8 5 11 11 H 1.08002 * 119.99401 * 4.65516 * 10 9 8 12 12 C 1.37870 * 120.00094 * 184.64409 * 10 9 8 13 13 N 1.31510 * 120.00399 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99780 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46913 * 60.00776 * 14 12 10 16 16 H 1.48503 * 109.46895 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47297 * 300.00383 * 14 12 10 18 18 C 1.46899 * 111.00046 * 56.04673 * 8 5 2 19 19 C 1.53005 * 117.50018 * 127.17926 * 18 8 5 20 20 C 1.52993 * 60.00000 * 252.50995 * 19 18 8 21 21 H 1.09001 * 109.46895 * 300.00204 * 1 2 3 22 22 H 1.08998 * 109.46766 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46645 * 60.00187 * 1 2 3 24 24 H 1.00897 * 111.00252 * 176.04515 * 4 2 1 25 25 H 1.00905 * 111.00207 * 300.00523 * 4 2 1 26 26 H 1.08997 * 109.47814 * 299.99998 * 7 5 2 27 27 H 1.08995 * 109.47317 * 60.00549 * 7 5 2 28 28 H 1.08999 * 109.47029 * 180.02562 * 7 5 2 29 29 H 1.09007 * 109.47069 * 283.21247 * 9 8 5 30 30 H 1.09006 * 109.46921 * 43.20438 * 9 8 5 31 31 H 0.97003 * 120.00312 * 180.02562 * 13 12 10 32 32 H 1.08999 * 115.55182 * 272.88659 * 18 8 5 33 33 H 1.09004 * 117.49594 * 0.02562 * 19 18 8 34 34 H 1.08994 * 117.49719 * 145.02032 * 19 18 8 35 35 H 1.09001 * 117.50147 * 252.50895 * 20 19 18 36 36 H 1.09007 * 117.49781 * 107.48463 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0400 -0.7212 -1.2492 6 1 3.1264 -0.6443 -1.2951 7 6 1.6353 -2.1954 -1.1878 8 7 1.4543 -0.1020 -2.4456 9 6 1.9221 -0.7705 -3.6671 10 6 1.0178 -0.4073 -4.8165 11 1 0.2251 0.3121 -4.6733 12 6 1.2025 -0.9931 -6.0508 13 7 2.1676 -1.8693 -6.2251 14 14 0.0810 -0.5433 -7.4754 15 1 0.1885 0.9123 -7.7495 16 1 0.4853 -1.3061 -8.6837 17 1 -1.3226 -0.8787 -7.1255 18 6 1.7441 1.3375 -2.4888 19 6 2.3811 1.8919 -3.7647 20 6 3.2139 1.7626 -2.4878 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3632 0.5138 -0.8900 24 1 3.0262 -0.7625 1.1910 25 1 1.6961 -0.2348 2.0386 26 1 2.0699 -2.6550 -0.3001 27 1 0.5491 -2.2724 -1.1419 28 1 1.9990 -2.7094 -2.0776 29 1 2.9398 -0.4497 -3.8899 30 1 1.9059 -1.8504 -3.5192 31 1 2.2978 -2.2812 -7.0936 32 1 1.0352 1.9758 -1.9615 33 1 2.5847 1.1885 -4.5722 34 1 2.0912 2.8950 -4.0770 35 1 3.4719 2.6807 -1.9600 36 1 3.9658 0.9740 -2.4550 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379346328.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:14 Heat of formation + Delta-G solvation = 14.770743 kcal Electronic energy + Delta-G solvation = -15173.857988 eV Core-core repulsion = 12886.185570 eV Total energy + Delta-G solvation = -2287.672418 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.47120 -37.22124 -35.02293 -33.76191 -30.58644 -29.44514 -28.56659 -25.31745 -23.91133 -22.99960 -21.57478 -19.37265 -18.40818 -17.66257 -16.71335 -16.59226 -16.30206 -15.76323 -15.29983 -14.57620 -14.17235 -13.73680 -13.42901 -13.32757 -12.85177 -12.71046 -12.64149 -12.56935 -12.46185 -12.15781 -12.06760 -11.62459 -11.40964 -11.28162 -11.19981 -10.75133 -10.52235 -9.47538 -8.87172 -8.13480 -6.19476 1.42029 1.44485 1.51957 2.43152 3.00716 3.17000 3.26332 3.75312 3.98839 4.13593 4.17273 4.20343 4.23727 4.46124 4.69844 4.75264 4.78827 4.91955 5.00292 5.06905 5.16178 5.19604 5.21401 5.31466 5.38784 5.48226 5.59597 5.65099 5.74022 6.15424 6.32027 6.47103 6.70308 6.75543 6.94135 7.46600 8.96584 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036908 B = 0.009430 C = 0.008708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.460393 B = 2968.378742 C = 3214.806663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.109 3.891 3 H 0.037 0.963 4 N -0.844 5.844 5 C 0.091 3.909 6 H 0.013 0.987 7 C -0.126 4.126 8 N -0.502 5.502 9 C 0.201 3.799 10 C -0.496 4.496 11 H 0.059 0.941 12 C 0.001 3.999 13 N -0.937 5.937 14 Si 0.960 3.040 15 H -0.268 1.268 16 H -0.287 1.287 17 H -0.271 1.271 18 C 0.032 3.968 19 C -0.188 4.188 20 C -0.208 4.208 21 H 0.061 0.939 22 H 0.050 0.950 23 H 0.056 0.944 24 H 0.343 0.657 25 H 0.351 0.649 26 H 0.078 0.922 27 H 0.053 0.947 28 H 0.024 0.976 29 H -0.035 1.035 30 H 0.013 0.987 31 H 0.261 0.739 32 H 0.127 0.873 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.356 6.131 11.855 13.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.003 4.003 3 H 0.054 0.946 4 N -0.376 5.376 5 C -0.017 4.017 6 H 0.031 0.969 7 C -0.183 4.183 8 N -0.225 5.225 9 C 0.075 3.925 10 C -0.535 4.535 11 H 0.077 0.923 12 C -0.197 4.197 13 N -0.578 5.578 14 Si 0.786 3.214 15 H -0.193 1.193 16 H -0.213 1.213 17 H -0.197 1.197 18 C -0.078 4.078 19 C -0.225 4.225 20 C -0.247 4.247 21 H 0.080 0.920 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.156 0.844 25 H 0.165 0.835 26 H 0.096 0.904 27 H 0.072 0.928 28 H 0.043 0.957 29 H -0.017 1.017 30 H 0.031 0.969 31 H 0.070 0.930 32 H 0.144 0.856 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.132 0.868 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.231 5.321 11.492 12.724 hybrid contribution 1.184 0.785 -1.071 1.779 sum -0.047 6.106 10.421 12.078 Atomic orbital electron populations 1.21658 0.93894 1.01882 1.01277 1.21071 0.96224 0.94129 0.88870 0.94555 1.58625 1.16372 1.58689 1.03900 1.21522 0.94592 0.95098 0.90533 0.96867 1.21709 1.01589 0.94704 1.00322 1.62120 1.57497 1.00757 1.02164 1.19543 0.92420 0.93459 0.87039 1.21297 1.14777 1.23154 0.94229 0.92266 1.25789 0.97084 0.95238 1.01552 1.70077 1.33301 1.29920 1.24517 0.85570 0.79202 0.78441 0.78219 1.19318 1.21275 1.19670 1.22711 0.93366 0.90122 1.01556 1.23359 1.04013 1.02277 0.92822 1.23290 0.95430 1.03074 1.02889 0.92046 0.93131 0.92450 0.84433 0.83468 0.90351 0.92752 0.95654 1.01722 0.96941 0.93016 0.85559 0.89245 0.87970 0.86762 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.62 9.01 71.98 0.65 -2.97 16 2 C 0.11 3.02 2.82 44.92 0.13 3.15 16 3 H 0.04 0.99 7.27 -2.39 -0.02 0.97 16 4 N -0.84 -18.90 8.27 -168.68 -1.39 -20.29 16 5 C 0.09 3.29 1.80 44.92 0.08 3.37 16 6 H 0.01 0.51 7.19 -2.38 -0.02 0.49 16 7 C -0.13 -4.67 8.56 71.98 0.62 -4.05 16 8 N -0.50 -21.20 3.65 -850.42 -3.10 -24.30 16 9 C 0.20 10.60 4.13 85.56 0.35 10.96 16 10 C -0.50 -27.72 6.84 25.60 0.17 -27.55 16 11 H 0.06 3.29 7.79 -2.91 -0.02 3.26 16 12 C 0.00 0.03 5.46 84.65 0.46 0.50 16 13 N -0.94 -56.65 13.29 21.44 0.28 -56.37 16 14 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 15 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 16 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 17 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 18 C 0.03 1.17 4.31 44.92 0.19 1.36 16 19 C -0.19 -7.39 8.86 30.59 0.27 -7.12 16 20 C -0.21 -7.05 9.38 30.59 0.29 -6.76 16 21 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.05 1.52 6.57 -2.39 -0.02 1.51 16 23 H 0.06 1.80 6.87 -2.39 -0.02 1.79 16 24 H 0.34 7.07 8.99 -89.70 -0.81 6.26 16 25 H 0.35 6.15 9.04 -89.69 -0.81 5.34 16 26 H 0.08 2.53 7.47 -2.39 -0.02 2.51 16 27 H 0.05 2.04 6.57 -2.39 -0.02 2.03 16 28 H 0.02 1.07 6.08 -2.39 -0.01 1.05 16 29 H -0.03 -1.99 6.06 -2.38 -0.01 -2.00 16 30 H 0.01 0.73 5.60 -2.38 -0.01 0.72 16 31 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 32 H 0.13 4.11 7.79 -2.39 -0.02 4.09 16 33 H 0.09 4.40 4.91 -2.38 -0.01 4.39 16 34 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 35 H 0.11 3.08 8.14 -2.39 -0.02 3.07 16 36 H 0.07 2.47 7.19 -2.38 -0.02 2.45 16 Total: -1.00 -62.19 275.35 0.49 -61.69 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -0.54 Total: 21.61 kcal Atomic # 6 Polarization: -32.33 SS G_CDS: 3.21 Total: -29.12 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -4.21 Total: -100.97 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -62.19 0.49 -61.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379346328.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.463 kcal (2) G-P(sol) polarization free energy of solvation -62.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds