Wall clock time and date at job start Mon Mar 30 2020 03:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46721 * 2 1 4 4 N 1.46893 * 109.47146 * 120.00650 * 2 1 3 5 5 C 1.52997 * 109.46833 * 240.00884 * 2 1 3 6 6 N 1.46904 * 109.46806 * 184.96294 * 5 2 1 7 7 C 1.46894 * 110.99792 * 288.00567 * 6 5 2 8 8 C 1.46903 * 110.99735 * 164.05241 * 6 5 2 9 9 C 1.53003 * 109.47108 * 195.66866 * 8 6 5 10 10 C 1.50694 * 115.54773 * 54.88082 * 9 8 6 11 11 H 1.07997 * 120.00495 * 266.06724 * 10 9 8 12 12 C 1.37876 * 119.99934 * 86.06635 * 10 9 8 13 13 N 1.31515 * 120.00462 * 178.09671 * 12 10 9 14 14 Si 1.86803 * 119.99972 * 358.10119 * 12 10 9 15 15 H 1.48494 * 109.47431 * 90.74301 * 14 12 10 16 16 H 1.48502 * 109.46903 * 210.74730 * 14 12 10 17 17 H 1.48503 * 109.46801 * 330.73795 * 14 12 10 18 18 C 1.52997 * 117.49887 * 269.21595 * 9 8 6 19 19 C 1.53001 * 117.50035 * 200.55442 * 9 8 6 20 20 H 1.09007 * 109.46932 * 299.99677 * 1 2 3 21 21 H 1.08996 * 109.47396 * 59.99402 * 1 2 3 22 22 H 1.08994 * 109.47084 * 179.97438 * 1 2 3 23 23 H 1.00906 * 111.00214 * 296.04096 * 4 2 1 24 24 H 1.00897 * 111.00242 * 60.00089 * 4 2 1 25 25 H 1.09000 * 109.46900 * 304.95942 * 5 2 1 26 26 H 1.08996 * 109.47466 * 64.96195 * 5 2 1 27 27 H 1.08996 * 109.47576 * 56.23376 * 7 6 5 28 28 H 1.09007 * 109.47006 * 176.23293 * 7 6 5 29 29 H 1.08997 * 109.47313 * 296.22954 * 7 6 5 30 30 H 1.08995 * 109.47724 * 315.67204 * 8 6 5 31 31 H 1.09007 * 109.47097 * 75.67153 * 8 6 5 32 32 H 0.96992 * 120.00731 * 179.97438 * 13 12 10 33 33 H 1.09000 * 117.50189 * 359.97438 * 18 9 8 34 34 H 1.09003 * 117.49856 * 145.02096 * 18 9 8 35 35 H 1.08997 * 117.49782 * 214.98175 * 19 9 8 36 36 H 1.08994 * 117.49692 * 359.97427 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0399 -0.7211 -1.2493 6 7 3.5041 -0.8257 -1.1909 7 6 4.1346 0.4822 -1.4138 8 6 3.9996 -1.8197 -2.1524 9 6 5.4438 -2.1879 -1.8068 10 6 5.6725 -2.6681 -0.3968 11 1 5.9752 -1.9696 0.3692 12 6 5.4951 -3.9993 -0.0846 13 7 5.7307 -4.4253 1.1371 14 14 4.9201 -5.1978 -1.3970 15 1 6.0996 -5.7877 -2.0797 16 1 4.1221 -6.2788 -0.7647 17 1 4.0813 -4.4796 -2.3900 18 6 6.5578 -1.3707 -2.4641 19 6 6.2981 -2.8111 -2.9126 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 1.7503 -0.1991 2.0372 24 1 1.6962 -1.6480 1.2225 25 1 1.6058 -1.7198 -1.2950 26 1 1.7510 -0.1584 -2.1370 27 1 3.7524 1.1985 -0.6866 28 1 5.2146 0.3892 -1.2992 29 1 3.9048 0.8294 -2.4211 30 1 3.3760 -2.7125 -2.1060 31 1 3.9619 -1.4022 -3.1587 32 1 5.6056 -5.3617 1.3568 33 1 6.2619 -0.5711 -3.1431 34 1 7.4563 -1.1809 -1.8768 35 1 7.0257 -3.5681 -2.6202 36 1 5.8310 -2.9591 -3.8862 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379351370.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:53 Heat of formation + Delta-G solvation = 35.457991 kcal Electronic energy + Delta-G solvation = -15027.441353 eV Core-core repulsion = 12740.666001 eV Total energy + Delta-G solvation = -2286.775352 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.07391 -36.35958 -33.86221 -31.80050 -28.63633 -27.12319 -26.51934 -25.11980 -22.03779 -21.47563 -19.87691 -18.68511 -16.05608 -15.98659 -15.09683 -14.68573 -14.26715 -13.94519 -13.57497 -13.02493 -12.73657 -12.58786 -12.51656 -12.06183 -11.65032 -11.55724 -11.24368 -11.04017 -10.84943 -10.48996 -10.32718 -10.19283 -9.82720 -9.40054 -8.82556 -8.32449 -8.29019 -8.00874 -7.26887 -5.83606 -3.79724 3.41756 3.50145 3.53354 4.49679 4.62512 4.96173 5.12111 5.22617 5.37385 5.43738 5.51683 5.70875 5.81208 5.93049 5.97455 6.06923 6.09088 6.12991 6.18355 6.29442 6.33090 6.43838 6.55401 6.58950 6.74923 6.85605 7.20394 7.31169 7.67901 7.89236 8.01029 8.03488 8.08545 8.80964 9.24696 9.80584 11.29676 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027909 B = 0.011570 C = 0.009799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.015823 B = 2419.400258 C = 2856.645750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.095 3.905 3 H 0.073 0.927 4 N -0.814 5.814 5 C 0.062 3.938 6 N -0.490 5.490 7 C 0.035 3.965 8 C 0.093 3.907 9 C 0.016 3.984 10 C -0.442 4.442 11 H 0.078 0.922 12 C 0.073 3.927 13 N -0.905 5.905 14 Si 0.875 3.125 15 H -0.284 1.284 16 H -0.298 1.298 17 H -0.263 1.263 18 C -0.185 4.185 19 C -0.207 4.207 20 H 0.052 0.948 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.327 0.673 24 H 0.341 0.659 25 H 0.065 0.935 26 H 0.022 0.978 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.002 0.998 30 H 0.066 0.934 31 H 0.002 0.998 32 H 0.259 0.741 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.443 7.559 -5.102 12.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.018 4.018 3 H 0.091 0.909 4 N -0.342 5.342 5 C -0.067 4.067 6 N -0.212 5.212 7 C -0.114 4.114 8 C -0.035 4.035 9 C 0.014 3.986 10 C -0.480 4.480 11 H 0.096 0.904 12 C -0.126 4.126 13 N -0.545 5.545 14 Si 0.705 3.295 15 H -0.211 1.211 16 H -0.226 1.226 17 H -0.188 1.188 18 C -0.222 4.222 19 C -0.245 4.245 20 H 0.071 0.929 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.139 0.861 24 H 0.154 0.846 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.020 0.980 30 H 0.084 0.916 31 H 0.020 0.980 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.575 7.366 -4.805 11.607 hybrid contribution -1.634 -0.625 -1.342 2.204 sum -9.209 6.741 -6.147 12.963 Atomic orbital electron populations 1.22701 0.98809 1.01751 1.01558 1.21385 0.90279 0.98206 0.91885 0.90893 1.58515 1.67434 1.05757 1.02468 1.22140 0.90248 0.99548 0.94761 1.61538 1.02399 1.06313 1.50918 1.22350 1.01358 0.90850 0.96794 1.21945 0.97608 0.94179 0.89763 1.19410 0.87199 0.98034 0.93921 1.20079 1.43721 0.93444 0.90753 0.90353 1.24869 0.95059 0.97926 0.94783 1.69896 1.50424 1.15314 1.18843 0.86966 0.79030 0.80928 0.82624 1.21057 1.22568 1.18768 1.22836 1.02878 0.92471 1.04028 1.23001 1.06082 0.96546 0.98880 0.92913 0.92696 0.92757 0.86091 0.84610 0.91685 0.96012 0.92558 0.90635 0.97973 0.91607 0.98014 0.93167 0.91536 0.89701 0.89500 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.15 9.48 37.16 0.35 -1.79 16 2 C 0.10 1.37 3.29 -67.72 -0.22 1.14 16 3 H 0.07 1.04 6.90 -51.93 -0.36 0.69 16 4 N -0.81 -13.10 8.96 -4.67 -0.04 -13.15 16 5 C 0.06 1.03 4.64 -3.82 -0.02 1.01 16 6 N -0.49 -9.75 4.09 -242.92 -0.99 -10.74 16 7 C 0.03 0.62 9.10 60.06 0.55 1.17 16 8 C 0.09 2.00 4.63 -3.82 -0.02 1.98 16 9 C 0.02 0.37 0.59 -155.66 -0.09 0.28 16 10 C -0.44 -12.49 9.11 -34.44 -0.31 -12.81 16 11 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 12 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 13 N -0.91 -28.16 13.96 55.43 0.77 -27.39 16 14 Si 0.88 22.22 25.04 -169.99 -4.26 17.96 16 15 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 17 H -0.26 -6.30 5.47 56.52 0.31 -5.99 16 18 C -0.18 -3.87 8.40 -26.69 -0.22 -4.10 16 19 C -0.21 -4.56 7.71 -26.69 -0.21 -4.76 16 20 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.33 4.47 9.07 -39.29 -0.36 4.12 16 24 H 0.34 5.61 9.00 -39.29 -0.35 5.25 16 25 H 0.06 1.10 7.73 -51.93 -0.40 0.70 16 26 H 0.02 0.33 8.05 -51.93 -0.42 -0.09 16 27 H 0.06 0.93 6.67 -51.93 -0.35 0.58 16 28 H 0.07 1.46 6.29 -51.93 -0.33 1.13 16 29 H 0.00 0.03 8.11 -51.93 -0.42 -0.39 16 30 H 0.07 1.49 5.78 -51.93 -0.30 1.19 16 31 H 0.00 0.04 7.99 -51.92 -0.41 -0.38 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.07 1.24 8.11 -51.93 -0.42 0.82 16 34 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 35 H 0.09 2.01 7.38 -51.93 -0.38 1.63 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 282.31 15.07 4.25 4.25 Total: -1.00 -30.70 282.31 -6.82 -37.53 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.27 Total: 7.37 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -0.29 Total: -15.84 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.26 Total: -51.27 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.26 Total: 17.96 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.70 -6.82 -37.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379351370.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.983 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds