Wall clock time and date at job start Mon Mar 30 2020 03:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46721 * 2 1 4 4 N 1.46893 * 109.47146 * 120.00650 * 2 1 3 5 5 C 1.52997 * 109.46833 * 240.00884 * 2 1 3 6 6 N 1.46904 * 109.46806 * 184.96294 * 5 2 1 7 7 C 1.46894 * 110.99792 * 288.00567 * 6 5 2 8 8 C 1.46903 * 110.99735 * 164.05241 * 6 5 2 9 9 C 1.53003 * 109.47108 * 195.66866 * 8 6 5 10 10 C 1.50694 * 115.54773 * 54.88082 * 9 8 6 11 11 H 1.07997 * 120.00495 * 266.06724 * 10 9 8 12 12 C 1.37876 * 119.99934 * 86.06635 * 10 9 8 13 13 N 1.31515 * 120.00462 * 178.09671 * 12 10 9 14 14 Si 1.86803 * 119.99972 * 358.10119 * 12 10 9 15 15 H 1.48494 * 109.47431 * 90.74301 * 14 12 10 16 16 H 1.48502 * 109.46903 * 210.74730 * 14 12 10 17 17 H 1.48503 * 109.46801 * 330.73795 * 14 12 10 18 18 C 1.52997 * 117.49887 * 269.21595 * 9 8 6 19 19 C 1.53001 * 117.50035 * 200.55442 * 9 8 6 20 20 H 1.09007 * 109.46932 * 299.99677 * 1 2 3 21 21 H 1.08996 * 109.47396 * 59.99402 * 1 2 3 22 22 H 1.08994 * 109.47084 * 179.97438 * 1 2 3 23 23 H 1.00906 * 111.00214 * 296.04096 * 4 2 1 24 24 H 1.00897 * 111.00242 * 60.00089 * 4 2 1 25 25 H 1.09000 * 109.46900 * 304.95942 * 5 2 1 26 26 H 1.08996 * 109.47466 * 64.96195 * 5 2 1 27 27 H 1.08996 * 109.47576 * 56.23376 * 7 6 5 28 28 H 1.09007 * 109.47006 * 176.23293 * 7 6 5 29 29 H 1.08997 * 109.47313 * 296.22954 * 7 6 5 30 30 H 1.08995 * 109.47724 * 315.67204 * 8 6 5 31 31 H 1.09007 * 109.47097 * 75.67153 * 8 6 5 32 32 H 0.96992 * 120.00731 * 179.97438 * 13 12 10 33 33 H 1.09000 * 117.50189 * 359.97438 * 18 9 8 34 34 H 1.09003 * 117.49856 * 145.02096 * 18 9 8 35 35 H 1.08997 * 117.49782 * 214.98175 * 19 9 8 36 36 H 1.08994 * 117.49692 * 359.97427 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0399 -0.7211 -1.2493 6 7 3.5041 -0.8257 -1.1909 7 6 4.1346 0.4822 -1.4138 8 6 3.9996 -1.8197 -2.1524 9 6 5.4438 -2.1879 -1.8068 10 6 5.6725 -2.6681 -0.3968 11 1 5.9752 -1.9696 0.3692 12 6 5.4951 -3.9993 -0.0846 13 7 5.7307 -4.4253 1.1371 14 14 4.9201 -5.1978 -1.3970 15 1 6.0996 -5.7877 -2.0797 16 1 4.1221 -6.2788 -0.7647 17 1 4.0813 -4.4796 -2.3900 18 6 6.5578 -1.3707 -2.4641 19 6 6.2981 -2.8111 -2.9126 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 1.7503 -0.1991 2.0372 24 1 1.6962 -1.6480 1.2225 25 1 1.6058 -1.7198 -1.2950 26 1 1.7510 -0.1584 -2.1370 27 1 3.7524 1.1985 -0.6866 28 1 5.2146 0.3892 -1.2992 29 1 3.9048 0.8294 -2.4211 30 1 3.3760 -2.7125 -2.1060 31 1 3.9619 -1.4022 -3.1587 32 1 5.6056 -5.3617 1.3568 33 1 6.2619 -0.5711 -3.1431 34 1 7.4563 -1.1809 -1.8768 35 1 7.0257 -3.5681 -2.6202 36 1 5.8310 -2.9591 -3.8862 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379351370.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:53 Heat of formation + Delta-G solvation = 12.264998 kcal Electronic energy + Delta-G solvation = -15028.447077 eV Core-core repulsion = 12740.666001 eV Total energy + Delta-G solvation = -2287.781075 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.62559 -37.83745 -35.26044 -34.00455 -29.81022 -28.75638 -27.79172 -27.14735 -23.46202 -23.19508 -21.11908 -20.60587 -18.07889 -17.22264 -16.84548 -16.25759 -15.79209 -15.46425 -15.13164 -14.66524 -14.38087 -13.96098 -13.80755 -13.51481 -13.15869 -13.06680 -12.75754 -12.56186 -12.34841 -12.10173 -12.08403 -11.82007 -11.55722 -11.28316 -10.77230 -10.43420 -10.14123 -9.20401 -8.70869 -8.08631 -6.08367 1.40802 1.42210 1.53938 2.49582 3.03241 3.26849 3.47379 3.84090 4.04400 4.23235 4.31010 4.38824 4.46286 4.50190 4.58205 4.59936 4.63691 4.81868 4.83867 4.88937 4.95955 4.99139 5.11648 5.12736 5.26985 5.32354 5.48168 5.57822 5.87467 6.44085 6.44734 6.62627 6.68775 6.83968 6.95953 7.55339 9.08627 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027909 B = 0.011570 C = 0.009799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.015823 B = 2419.400258 C = 2856.645750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.098 3.902 3 H 0.075 0.925 4 N -0.838 5.838 5 C 0.061 3.939 6 N -0.520 5.520 7 C 0.040 3.960 8 C 0.101 3.899 9 C -0.011 4.011 10 C -0.432 4.432 11 H 0.024 0.976 12 C 0.015 3.985 13 N -0.958 5.958 14 Si 0.936 3.064 15 H -0.278 1.278 16 H -0.304 1.304 17 H -0.235 1.235 18 C -0.166 4.166 19 C -0.202 4.202 20 H 0.064 0.936 21 H 0.068 0.932 22 H 0.051 0.949 23 H 0.338 0.662 24 H 0.335 0.665 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.024 0.976 30 H 0.051 0.949 31 H 0.026 0.974 32 H 0.257 0.743 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.845 8.454 -7.633 15.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.014 4.014 3 H 0.093 0.907 4 N -0.368 5.368 5 C -0.067 4.067 6 N -0.243 5.243 7 C -0.108 4.108 8 C -0.027 4.027 9 C -0.012 4.012 10 C -0.470 4.470 11 H 0.043 0.957 12 C -0.180 4.180 13 N -0.600 5.600 14 Si 0.763 3.237 15 H -0.204 1.204 16 H -0.232 1.232 17 H -0.159 1.159 18 C -0.203 4.203 19 C -0.240 4.240 20 H 0.083 0.917 21 H 0.087 0.913 22 H 0.070 0.930 23 H 0.151 0.849 24 H 0.147 0.853 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.984 8.301 -7.358 14.274 hybrid contribution -1.137 -0.791 -0.472 1.463 sum -10.121 7.510 -7.830 14.837 Atomic orbital electron populations 1.22553 0.96231 1.02037 1.02868 1.21380 0.92228 0.97550 0.90264 0.90705 1.58527 1.68458 1.05876 1.03893 1.22222 0.88150 0.99733 0.96599 1.61458 1.04552 1.07024 1.51230 1.22275 0.99943 0.90235 0.98369 1.21730 0.95328 0.94362 0.91282 1.19331 0.89542 1.00530 0.91781 1.20122 1.42154 0.92413 0.92306 0.95730 1.25661 0.95586 0.99963 0.96804 1.70066 1.52897 1.15659 1.21406 0.85964 0.78962 0.78399 0.80373 1.20392 1.23201 1.15857 1.22831 1.01075 0.93037 1.03336 1.23033 1.04995 0.96648 0.99308 0.91710 0.91258 0.92984 0.84883 0.85260 0.92584 0.93922 0.91675 0.92731 0.95726 0.93069 0.95597 0.93379 0.88307 0.90913 0.91132 0.88448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.58 9.48 71.98 0.68 -2.89 16 2 C 0.10 2.63 3.29 44.92 0.15 2.78 16 3 H 0.07 1.98 6.90 -2.38 -0.02 1.96 16 4 N -0.84 -26.72 8.96 -168.69 -1.51 -28.23 16 5 C 0.06 1.89 4.64 86.30 0.40 2.29 16 6 N -0.52 -19.84 4.09 -922.46 -3.78 -23.61 16 7 C 0.04 1.34 9.10 127.69 1.16 2.50 16 8 C 0.10 4.09 4.63 86.30 0.40 4.49 16 9 C -0.01 -0.49 0.59 -52.93 -0.03 -0.52 16 10 C -0.43 -24.97 9.11 25.60 0.23 -24.73 16 11 H 0.02 1.64 8.06 -2.91 -0.02 1.62 16 12 C 0.01 0.87 5.47 84.65 0.46 1.33 16 13 N -0.96 -61.85 13.96 21.45 0.30 -61.55 16 14 Si 0.94 45.82 25.04 68.60 1.72 47.54 16 15 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 16 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 17 H -0.24 -10.38 5.47 99.48 0.54 -9.84 16 18 C -0.17 -6.56 8.40 30.62 0.26 -6.31 16 19 C -0.20 -8.31 7.71 30.62 0.24 -8.08 16 20 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 21 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 22 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.34 9.12 9.07 -89.69 -0.81 8.31 16 24 H 0.33 11.11 9.00 -89.70 -0.81 10.30 16 25 H 0.06 1.81 7.73 -2.39 -0.02 1.79 16 26 H 0.04 1.14 8.05 -2.39 -0.02 1.12 16 27 H 0.06 2.03 6.67 -2.39 -0.02 2.01 16 28 H 0.05 2.03 6.29 -2.38 -0.01 2.02 16 29 H 0.02 0.71 8.11 -2.39 -0.02 0.69 16 30 H 0.05 2.19 5.78 -2.39 -0.01 2.18 16 31 H 0.03 0.93 7.99 -2.38 -0.02 0.91 16 32 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 33 H 0.10 3.29 8.11 -2.39 -0.02 3.27 16 34 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.07 3.13 7.38 -2.39 -0.02 3.11 16 36 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 Total: -1.00 -67.61 282.31 -0.05 -67.66 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: -0.73 Total: 27.34 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: 3.95 Total: -29.14 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -4.99 Total: -113.40 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.72 Total: 47.54 kcal Total: -67.61 -0.05 -67.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379351370.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.924 kcal (2) G-P(sol) polarization free energy of solvation -67.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds